- using R Under development (unstable) (2026-06-06 r90114)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-1) 16.1.0
GNU Fortran (Debian 16.1.0-1) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-06-07 13:08:09 UTC
- checking for file ‘kDGLM/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘kDGLM’ version ‘1.2.14’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [2s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... INFO
Packages suggested but not available for checking: 'plotly', 'tidyverse'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘kDGLM’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... WARNING
Invalid citation information in ‘inst/CITATION’:
Fatal error: cannot create 'R_TempDir'
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking whether startup messages can be suppressed ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s/17s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking relative paths in package URLs ... NOTE
Checking relative paths failed with message:
inferior call failed
- checking examples ... [12s/13s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [26s/29s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘example1.Rmd’ using rmarkdown
Quitting from example1.Rmd:331-367 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `mutate()`:
! could not find function "mutate"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'example1.Rmd' failed with diagnostics:
could not find function "mutate"
--- failed re-building ‘example1.Rmd’
--- re-building ‘fitting.Rmd’ using rmarkdown
Warning in file("", "w+b") :
cannot open file '/tmp/Rtmp7p7klU/Rf2337146414f62': No space left on device
Quitting from fitting.Rmd:186-188 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Quitting from fitting.Rmd:186-188 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fitting.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘fitting.Rmd’
Fatal error: cannot create 'R_TempDir'
--- re-building ‘outcomes.Rmd’ using rmarkdown
--- finished re-building ‘outcomes.Rmd’
--- re-building ‘structures.Rmd’ using rmarkdown
--- finished re-building ‘structures.Rmd’
SUMMARY: processing the following files failed:
‘example1.Rmd’ ‘fitting.Rmd’ ‘intro.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/6s] OK
- checking HTML version of manual ... [4s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE