• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 15:39:46 UTC
• checking for file ‘joint.Cox/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘joint.Cox’ version ‘3.16’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Takeshi",                     family = "Emura",                     role = c("aut", "cre"),                     email = "takeshiemura@gmail.com") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘joint.Cox’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/15s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [3s/5s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp07F5uW’ ‘~/tmp/scratch/Rtmp0IXZbt’   ‘~/tmp/scratch/Rtmp0JX83B’ ‘~/tmp/scratch/Rtmp1HaZ6E’   ‘~/tmp/scratch/Rtmp1KnaQ1’ ‘~/tmp/scratch/Rtmp1mv7Em’   ‘~/tmp/scratch/Rtmp2NajK9’ ‘~/tmp/scratch/Rtmp2ts3GN’   ‘~/tmp/scratch/Rtmp2ySMt8’ ‘~/tmp/scratch/Rtmp3kt4Ij’   ‘~/tmp/scratch/Rtmp40dYiv’ ‘~/tmp/scratch/Rtmp57snJm’   ‘~/tmp/scratch/Rtmp59ImOz’ ‘~/tmp/scratch/Rtmp70dAop’   ‘~/tmp/scratch/Rtmp7qFtff’ ‘~/tmp/scratch/Rtmp7utvT8’   ‘~/tmp/scratch/Rtmp8YR7cB’ ‘~/tmp/scratch/Rtmp8YjU3d’   ‘~/tmp/scratch/Rtmp8fsrNP’ ‘~/tmp/scratch/Rtmp8wm6T0’   ‘~/tmp/scratch/Rtmp9C3FfC’ ‘~/tmp/scratch/Rtmp9Pknzy’   ‘~/tmp/scratch/Rtmp9qWCco’ ‘~/tmp/scratch/RtmpB68Wvh’   ‘~/tmp/scratch/RtmpCBNJLj’ ‘~/tmp/scratch/RtmpCuhpku’   ‘~/tmp/scratch/RtmpD6Kgkm’ ‘~/tmp/scratch/RtmpFSvwRq’   ‘~/tmp/scratch/RtmpGU0T4N’ ‘~/tmp/scratch/RtmpGcUBNP’   ‘~/tmp/scratch/RtmpHuPR7Y’ ‘~/tmp/scratch/RtmpI4uFdD’   ‘~/tmp/scratch/RtmpI5U6TJ’ ‘~/tmp/scratch/RtmpIa8ImF’   ‘~/tmp/scratch/RtmpJLwDE2’ ‘~/tmp/scratch/RtmpJhL8CO’   ‘~/tmp/scratch/RtmpJvRcAR’ ‘~/tmp/scratch/RtmpK33mif’   ‘~/tmp/scratch/RtmpKw1nKa’ ‘~/tmp/scratch/RtmpLSyh2W’   ‘~/tmp/scratch/RtmpLT6c6e’ ‘~/tmp/scratch/RtmpMBit3j’   ‘~/tmp/scratch/RtmpMO9vAR’ ‘~/tmp/scratch/RtmpMVFfvU’   ‘~/tmp/scratch/RtmpMpGdbd’ ‘~/tmp/scratch/RtmpNIoACX’   ‘~/tmp/scratch/RtmpOBEg30’ ‘~/tmp/scratch/RtmpODn1fV’   ‘~/tmp/scratch/RtmpOFV9NA’ ‘~/tmp/scratch/RtmpPBAWKF’   ‘~/tmp/scratch/RtmpPg2onC’ ‘~/tmp/scratch/RtmpPgTXT2’   ‘~/tmp/scratch/RtmpR2KXtI’ ‘~/tmp/scratch/RtmpRce8Tl’   ‘~/tmp/scratch/RtmpRqx4Ik’ ‘~/tmp/scratch/RtmpRxlHxK’   ‘~/tmp/scratch/RtmpSogruK’ ‘~/tmp/scratch/RtmpT3wC4J’   ‘~/tmp/scratch/RtmpTWtJyq’ ‘~/tmp/scratch/RtmpTaWtTo’   ‘~/tmp/scratch/RtmpTgoPw7’ ‘~/tmp/scratch/RtmpU2laqk’   ‘~/tmp/scratch/RtmpUAWwVI’ ‘~/tmp/scratch/RtmpV8gTQd’   ‘~/tmp/scratch/RtmpVFrwRN’ ‘~/tmp/scratch/RtmpVe7N3J’   ‘~/tmp/scratch/RtmpVwSMRV’ ‘~/tmp/scratch/RtmpWIgpK7’   ‘~/tmp/scratch/RtmpWL7aAJ’ ‘~/tmp/scratch/RtmpWnKDBi’   ‘~/tmp/scratch/RtmpX3Kx8I’ ‘~/tmp/scratch/RtmpYZogzc’   ‘~/tmp/scratch/RtmpZIeMx4’ ‘~/tmp/scratch/RtmpZsC8xA’   ‘~/tmp/scratch/RtmpaOAte3’ ‘~/tmp/scratch/Rtmpao1FwW’   ‘~/tmp/scratch/RtmpaqvDXS’ ‘~/tmp/scratch/RtmpbcmyOK’   ‘~/tmp/scratch/RtmpbnH6Hg’ ‘~/tmp/scratch/RtmpcCEs6d’   ‘~/tmp/scratch/RtmpcFc8Er’ ‘~/tmp/scratch/RtmpcFoujx’   ‘~/tmp/scratch/RtmpcGnixu’ ‘~/tmp/scratch/RtmpcmbK9h’   ‘~/tmp/scratch/RtmpdLlXd9’ ‘~/tmp/scratch/RtmpdPtPyv’   ‘~/tmp/scratch/RtmpdRFzUl’ ‘~/tmp/scratch/RtmpdjAeq0’   ‘~/tmp/scratch/RtmpeQsQYE’ ‘~/tmp/scratch/Rtmpet59bA’   ‘~/tmp/scratch/RtmpfEAorp’ ‘~/tmp/scratch/RtmpfZcRq9’   ‘~/tmp/scratch/Rtmpggnr4y’ ‘~/tmp/scratch/Rtmph2wmNy’   ‘~/tmp/scratch/Rtmphqf7WC’ ‘~/tmp/scratch/RtmpihUwD1’   ‘~/tmp/scratch/RtmpjBb84N’ ‘~/tmp/scratch/RtmpjcwtiL’   ‘~/tmp/scratch/Rtmpl8gEtU’ ‘~/tmp/scratch/RtmplUNzBR’   ‘~/tmp/scratch/RtmpofWndf’ ‘~/tmp/scratch/RtmpomN2xO’   ‘~/tmp/scratch/RtmppBpUHu’ ‘~/tmp/scratch/RtmppCNFAd’   ‘~/tmp/scratch/RtmppPaEZU’ ‘~/tmp/scratch/RtmppjeXbW’   ‘~/tmp/scratch/RtmpqHAht6’ ‘~/tmp/scratch/RtmpqKJ8YU’   ‘~/tmp/scratch/RtmpqOaalX’ ‘~/tmp/scratch/RtmpqaWxvo’   ‘~/tmp/scratch/RtmprLTOCp’ ‘~/tmp/scratch/RtmpratfN0’   ‘~/tmp/scratch/RtmpreGnj7’ ‘~/tmp/scratch/RtmprguPnW’   ‘~/tmp/scratch/RtmprzsTrH’ ‘~/tmp/scratch/Rtmps1MV4T’   ‘~/tmp/scratch/RtmpsLudVF’ ‘~/tmp/scratch/RtmpsuLmhf’   ‘~/tmp/scratch/RtmptGxj1F’ ‘~/tmp/scratch/RtmptbLbnK’   ‘~/tmp/scratch/RtmpuDeTHz’ ‘~/tmp/scratch/RtmpuG37jw’   ‘~/tmp/scratch/RtmputlMlb’ ‘~/tmp/scratch/RtmpvMO9ue’   ‘~/tmp/scratch/Rtmpvbflmp’ ‘~/tmp/scratch/RtmpvtM7b9’   ‘~/tmp/scratch/RtmpwF0QQn’ ‘~/tmp/scratch/RtmpwhALHT’   ‘~/tmp/scratch/Rtmpx336z2’ ‘~/tmp/scratch/RtmpxLm0dS’   ‘~/tmp/scratch/RtmpytGBzG’ ‘~/tmp/scratch/RtmpzXzkAb’   ‘~/tmp/scratch/RtmpziGNLU’ ‘~/tmp/scratch/xvfb-run.2bTQwR’   ‘~/tmp/scratch/xvfb-run.3SQWse’ ‘~/tmp/scratch/xvfb-run.4Mlzsm’   ‘~/tmp/scratch/xvfb-run.68FdSu’ ‘~/tmp/scratch/xvfb-run.6IzCYe’   ‘~/tmp/scratch/xvfb-run.87neOE’ ‘~/tmp/scratch/xvfb-run.9WfEan’   ‘~/tmp/scratch/xvfb-run.AFUhQz’ ‘~/tmp/scratch/xvfb-run.AIrY4Y’   ‘~/tmp/scratch/xvfb-run.AUf2ZK’ ‘~/tmp/scratch/xvfb-run.BKrWCD’   ‘~/tmp/scratch/xvfb-run.CetG3R’ ‘~/tmp/scratch/xvfb-run.ExiJ0r’   ‘~/tmp/scratch/xvfb-run.GBWyF3’ ‘~/tmp/scratch/xvfb-run.GTWUnX’   ‘~/tmp/scratch/xvfb-run.GgbHIe’ ‘~/tmp/scratch/xvfb-run.HcktJE’   ‘~/tmp/scratch/xvfb-run.JGmZ6g’ ‘~/tmp/scratch/xvfb-run.KiB929’   ‘~/tmp/scratch/xvfb-run.LJeVG3’ ‘~/tmp/scratch/xvfb-run.LNpELs’   ‘~/tmp/scratch/xvfb-run.Pur3Gv’ ‘~/tmp/scratch/xvfb-run.QeWrax’   ‘~/tmp/scratch/xvfb-run.UdTIDn’ ‘~/tmp/scratch/xvfb-run.V8IsvG’   ‘~/tmp/scratch/xvfb-run.VXgKwQ’ ‘~/tmp/scratch/xvfb-run.Z7V5fI’   ‘~/tmp/scratch/xvfb-run.ZeWixr’ ‘~/tmp/scratch/xvfb-run.cZeahi’   ‘~/tmp/scratch/xvfb-run.cclC3U’ ‘~/tmp/scratch/xvfb-run.dPTwfb’   ‘~/tmp/scratch/xvfb-run.eKte0M’ ‘~/tmp/scratch/xvfb-run.gngv07’   ‘~/tmp/scratch/xvfb-run.h5DHFc’ ‘~/tmp/scratch/xvfb-run.hlexRg’   ‘~/tmp/scratch/xvfb-run.jl9sdN’ ‘~/tmp/scratch/xvfb-run.kA8tMX’   ‘~/tmp/scratch/xvfb-run.kYqMGz’ ‘~/tmp/scratch/xvfb-run.oBIDxw’   ‘~/tmp/scratch/xvfb-run.oom6hI’ ‘~/tmp/scratch/xvfb-run.rrlqFG’   ‘~/tmp/scratch/xvfb-run.rzb9Lr’ ‘~/tmp/scratch/xvfb-run.srvZtZ’   ‘~/tmp/scratch/xvfb-run.ssEwwN’ ‘~/tmp/scratch/xvfb-run.ssoahf’   ‘~/tmp/scratch/xvfb-run.t0FTzE’ ‘~/tmp/scratch/xvfb-run.tY16hk’   ‘~/tmp/scratch/xvfb-run.uFp3Iz’ ‘~/tmp/scratch/xvfb-run.ubskv2’   ‘~/tmp/scratch/xvfb-run.umTJD1’ ‘~/tmp/scratch/xvfb-run.usXuX6’   ‘~/tmp/scratch/xvfb-run.wIj4M7’ ‘~/tmp/scratch/xvfb-run.xNqkP2’   ‘~/tmp/scratch/xvfb-run.yTXN2m’
• DONE

Status: 2 NOTEs