• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:38:52 UTC
• checking for file ‘isotonic.pen/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘isotonic.pen’ version ‘1.0’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Mary Meyer <meyer@stat.colostate.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("Mary", "C"),                       family = "Meyer",                       role = "aut"),                person(given = "Jiwen",                       family = "Wu",                       role = "aut"),                person(given = c("Jean", "D."),                       family = "Opsomer",                       role = "aut"),                person(given = "Mary",                       family = "Meyer",                       role = "cre",                       email = "meyer@stat.colostate.edu")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘isotonic.pen’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [2s/3s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp12c6fW’ ‘~/tmp/scratch/Rtmp1IFuSN’   ‘~/tmp/scratch/Rtmp1scmf8’ ‘~/tmp/scratch/Rtmp2Yub7P’   ‘~/tmp/scratch/Rtmp3WWL4T’ ‘~/tmp/scratch/Rtmp3ZRkcd’   ‘~/tmp/scratch/Rtmp4reVmI’ ‘~/tmp/scratch/Rtmp5Z4Wrl’   ‘~/tmp/scratch/Rtmp5wbpX6’ ‘~/tmp/scratch/Rtmp6YieVa’   ‘~/tmp/scratch/Rtmp6joJBx’ ‘~/tmp/scratch/Rtmp775OKy’   ‘~/tmp/scratch/Rtmp7H3IpK’ ‘~/tmp/scratch/Rtmp7Wx5XO’   ‘~/tmp/scratch/Rtmp7mQgdN’ ‘~/tmp/scratch/Rtmp7s0Bw0’   ‘~/tmp/scratch/Rtmp8mqfTI’ ‘~/tmp/scratch/Rtmp8wbAkX’   ‘~/tmp/scratch/Rtmp9RjU1i’ ‘~/tmp/scratch/Rtmp9U9faf’   ‘~/tmp/scratch/Rtmp9tEgzO’ ‘~/tmp/scratch/RtmpA3YUI4’   ‘~/tmp/scratch/RtmpAiaMtT’ ‘~/tmp/scratch/RtmpBC8d7N’   ‘~/tmp/scratch/RtmpBHzycw’ ‘~/tmp/scratch/RtmpDXPxPP’   ‘~/tmp/scratch/RtmpDnnLpc’ ‘~/tmp/scratch/RtmpDqmK2D’   ‘~/tmp/scratch/RtmpDvch96’ ‘~/tmp/scratch/RtmpE5zd39’   ‘~/tmp/scratch/RtmpEDgA9Q’ ‘~/tmp/scratch/RtmpEJYdoz’   ‘~/tmp/scratch/RtmpEu4psj’ ‘~/tmp/scratch/RtmpFxAVMd’   ‘~/tmp/scratch/RtmpGZIU81’ ‘~/tmp/scratch/RtmpHDjoog’   ‘~/tmp/scratch/RtmpHe7YWL’ ‘~/tmp/scratch/RtmpISYFR9’   ‘~/tmp/scratch/RtmpJO6kaf’ ‘~/tmp/scratch/RtmpJnUpT5’   ‘~/tmp/scratch/RtmpJt8QoT’ ‘~/tmp/scratch/RtmpKkqn5S’   ‘~/tmp/scratch/RtmpLqSh4b’ ‘~/tmp/scratch/RtmpMjyg6k’   ‘~/tmp/scratch/RtmpNuHWGh’ ‘~/tmp/scratch/RtmpOw38Gk’   ‘~/tmp/scratch/RtmpPYXgI8’ ‘~/tmp/scratch/RtmpPvhvwB’   ‘~/tmp/scratch/RtmpQaOXRC’ ‘~/tmp/scratch/RtmpQf7ji9’   ‘~/tmp/scratch/RtmpRSwZq3’ ‘~/tmp/scratch/RtmpRdeAvz’   ‘~/tmp/scratch/RtmpS3zvgo’ ‘~/tmp/scratch/RtmpSWD7j0’   ‘~/tmp/scratch/RtmpSaHazd’ ‘~/tmp/scratch/RtmpUVNvO6’   ‘~/tmp/scratch/RtmpUWwUdE’ ‘~/tmp/scratch/RtmpUlrKMU’   ‘~/tmp/scratch/RtmpUsyO5n’ ‘~/tmp/scratch/RtmpVggoY3’   ‘~/tmp/scratch/RtmpVuQ1Xu’ ‘~/tmp/scratch/RtmpWOTYZB’   ‘~/tmp/scratch/RtmpX8xcSy’ ‘~/tmp/scratch/RtmpXBtuoN’   ‘~/tmp/scratch/RtmpXTy2q6’ ‘~/tmp/scratch/RtmpXwKE1T’   ‘~/tmp/scratch/RtmpYE6MM1’ ‘~/tmp/scratch/RtmpYj47Wv’   ‘~/tmp/scratch/RtmpZxhbzv’ ‘~/tmp/scratch/RtmpatSF08’   ‘~/tmp/scratch/Rtmpbjogno’ ‘~/tmp/scratch/RtmpbknUVS’   ‘~/tmp/scratch/Rtmpbt9czz’ ‘~/tmp/scratch/RtmpcP5yww’   ‘~/tmp/scratch/RtmpcjraTt’ ‘~/tmp/scratch/RtmpcrA9Yv’   ‘~/tmp/scratch/RtmpdZKOMG’ ‘~/tmp/scratch/RtmpdkHGHQ’   ‘~/tmp/scratch/RtmpdlZBiL’ ‘~/tmp/scratch/Rtmpdpkw4Y’   ‘~/tmp/scratch/Rtmpe9AHw4’ ‘~/tmp/scratch/RtmperAmAl’   ‘~/tmp/scratch/Rtmpg0RoF9’ ‘~/tmp/scratch/Rtmpg35ATi’   ‘~/tmp/scratch/RtmphH59ZU’ ‘~/tmp/scratch/RtmphfPYGj’   ‘~/tmp/scratch/Rtmpig6UA6’ ‘~/tmp/scratch/RtmpijV78B’   ‘~/tmp/scratch/RtmpjwNksR’ ‘~/tmp/scratch/Rtmpjzx8On’   ‘~/tmp/scratch/RtmpkXFWfD’ ‘~/tmp/scratch/RtmpkXZDkd’   ‘~/tmp/scratch/RtmpkxG4ei’ ‘~/tmp/scratch/Rtmpl3uCxm’   ‘~/tmp/scratch/RtmplCKniJ’ ‘~/tmp/scratch/RtmplQEQzu’   ‘~/tmp/scratch/RtmpmPONUU’ ‘~/tmp/scratch/RtmpmWJnh0’   ‘~/tmp/scratch/Rtmpn4tr8i’ ‘~/tmp/scratch/RtmpnFbOE9’   ‘~/tmp/scratch/Rtmpo2yVpg’ ‘~/tmp/scratch/RtmpoLRKjg’   ‘~/tmp/scratch/RtmpoXCfvd’ ‘~/tmp/scratch/RtmppTaM3E’   ‘~/tmp/scratch/RtmppqBt2H’ ‘~/tmp/scratch/RtmpqCTila’   ‘~/tmp/scratch/RtmpsChTDo’ ‘~/tmp/scratch/RtmpssHcul’   ‘~/tmp/scratch/RtmptDZLOq’ ‘~/tmp/scratch/RtmpteeBUD’   ‘~/tmp/scratch/RtmptvINIo’ ‘~/tmp/scratch/RtmpxKgdbE’   ‘~/tmp/scratch/RtmpxXng9r’ ‘~/tmp/scratch/RtmpyGU28F’   ‘~/tmp/scratch/RtmpyROnoh’ ‘~/tmp/scratch/RtmpyVaqEx’   ‘~/tmp/scratch/RtmpyfO87u’ ‘~/tmp/scratch/RtmpyiVafQ’   ‘~/tmp/scratch/Rtmpz4aVhK’ ‘~/tmp/scratch/RtmpzLJPbo’   ‘~/tmp/scratch/RtmpzSlBmW’ ‘~/tmp/scratch/Rtmpzsxncy’   ‘~/tmp/scratch/Rtmpzxk5Qc’ ‘~/tmp/scratch/xvfb-run.1Oq5Ff’   ‘~/tmp/scratch/xvfb-run.3nOMPo’ ‘~/tmp/scratch/xvfb-run.5NX9QE’   ‘~/tmp/scratch/xvfb-run.5ZeQRe’ ‘~/tmp/scratch/xvfb-run.5t3XdN’   ‘~/tmp/scratch/xvfb-run.6BMMHG’ ‘~/tmp/scratch/xvfb-run.8YEeTW’   ‘~/tmp/scratch/xvfb-run.CmBk42’ ‘~/tmp/scratch/xvfb-run.F26THh’   ‘~/tmp/scratch/xvfb-run.FemuNO’ ‘~/tmp/scratch/xvfb-run.Go2zka’   ‘~/tmp/scratch/xvfb-run.JHR9h5’ ‘~/tmp/scratch/xvfb-run.Lph94f’   ‘~/tmp/scratch/xvfb-run.LqWA5W’ ‘~/tmp/scratch/xvfb-run.LrFvV3’   ‘~/tmp/scratch/xvfb-run.NQ9A7b’ ‘~/tmp/scratch/xvfb-run.OTP7re’   ‘~/tmp/scratch/xvfb-run.PcpqXC’ ‘~/tmp/scratch/xvfb-run.QgTDUY’   ‘~/tmp/scratch/xvfb-run.Qj6wVy’ ‘~/tmp/scratch/xvfb-run.Rd0lgl’   ‘~/tmp/scratch/xvfb-run.Rvlnx4’ ‘~/tmp/scratch/xvfb-run.S1NbXc’   ‘~/tmp/scratch/xvfb-run.WluNFh’ ‘~/tmp/scratch/xvfb-run.YJklHh’   ‘~/tmp/scratch/xvfb-run.YY7l5H’ ‘~/tmp/scratch/xvfb-run.YgJwqb’   ‘~/tmp/scratch/xvfb-run.aKJJFR’ ‘~/tmp/scratch/xvfb-run.clZg01’   ‘~/tmp/scratch/xvfb-run.db0Mpi’ ‘~/tmp/scratch/xvfb-run.e534GN’   ‘~/tmp/scratch/xvfb-run.gdMq26’ ‘~/tmp/scratch/xvfb-run.ivWOaq’   ‘~/tmp/scratch/xvfb-run.jCwWbh’ ‘~/tmp/scratch/xvfb-run.juFckn’   ‘~/tmp/scratch/xvfb-run.ksFS0Z’ ‘~/tmp/scratch/xvfb-run.lStolR’   ‘~/tmp/scratch/xvfb-run.lkRdog’ ‘~/tmp/scratch/xvfb-run.mqZhXw’   ‘~/tmp/scratch/xvfb-run.oVG6Y1’ ‘~/tmp/scratch/xvfb-run.p9j48m’   ‘~/tmp/scratch/xvfb-run.q0fMRw’ ‘~/tmp/scratch/xvfb-run.qH70aQ’   ‘~/tmp/scratch/xvfb-run.qdA2jX’ ‘~/tmp/scratch/xvfb-run.subM1d’   ‘~/tmp/scratch/xvfb-run.tiMbQJ’ ‘~/tmp/scratch/xvfb-run.uAAuPi’   ‘~/tmp/scratch/xvfb-run.uaDgeO’ ‘~/tmp/scratch/xvfb-run.zEwYml’   ‘~/tmp/scratch/xvfb-run.zFzUm1’ ‘~/tmp/scratch/xvfb-run.zVczOl’   ‘~/tmp/scratch/xvfb-run.za87E6’
• DONE

Status: 2 NOTEs