• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:33:18 UTC
• checking for file ‘immunogenetr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘immunogenetr’ version ‘1.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘immunogenetr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/9s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/10s] OK   Running ‘testthat.R’ [9s/10s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0QdR6s’ ‘~/tmp/scratch/Rtmp0r2zaF’   ‘~/tmp/scratch/Rtmp19u5uk’ ‘~/tmp/scratch/Rtmp1zjDwl’   ‘~/tmp/scratch/Rtmp2FYToZ’ ‘~/tmp/scratch/Rtmp2MJmXY’   ‘~/tmp/scratch/Rtmp3AxcDF’ ‘~/tmp/scratch/Rtmp3Ig8cl’   ‘~/tmp/scratch/Rtmp46YSfu’ ‘~/tmp/scratch/Rtmp4OTmW7’   ‘~/tmp/scratch/Rtmp5niiWr’ ‘~/tmp/scratch/Rtmp67ninx’   ‘~/tmp/scratch/Rtmp6twmff’ ‘~/tmp/scratch/Rtmp7Ru7El’   ‘~/tmp/scratch/Rtmp7dZksp’ ‘~/tmp/scratch/Rtmp7wbNH8’   ‘~/tmp/scratch/Rtmp8s8usn’ ‘~/tmp/scratch/Rtmp9cKS3f’   ‘~/tmp/scratch/Rtmp9hdK18’ ‘~/tmp/scratch/Rtmp9rjrQu’   ‘~/tmp/scratch/RtmpB2f59w’ ‘~/tmp/scratch/RtmpCi5900’   ‘~/tmp/scratch/RtmpDZSUYU’ ‘~/tmp/scratch/RtmpDa4xEj’   ‘~/tmp/scratch/RtmpDc1m2g’ ‘~/tmp/scratch/RtmpDoT4wP’   ‘~/tmp/scratch/RtmpE13taV’ ‘~/tmp/scratch/RtmpEG5Tb6’   ‘~/tmp/scratch/RtmpFl9c0v’ ‘~/tmp/scratch/RtmpFqLblw’   ‘~/tmp/scratch/RtmpFxkfms’ ‘~/tmp/scratch/RtmpG8r2QN’   ‘~/tmp/scratch/RtmpGT9nV5’ ‘~/tmp/scratch/RtmpHbloV3’   ‘~/tmp/scratch/RtmpHx7Wsh’ ‘~/tmp/scratch/RtmpIFGU9U’   ‘~/tmp/scratch/RtmpIK7XBX’ ‘~/tmp/scratch/RtmpIZzGlZ’   ‘~/tmp/scratch/RtmpIr5n7T’ ‘~/tmp/scratch/RtmpJCHfTe’   ‘~/tmp/scratch/RtmpJly1SS’ ‘~/tmp/scratch/RtmpLfzF2M’   ‘~/tmp/scratch/RtmpMZ3gRt’ ‘~/tmp/scratch/RtmpMxI0sr’   ‘~/tmp/scratch/RtmpN5zgNO’ ‘~/tmp/scratch/RtmpNDNzGF’   ‘~/tmp/scratch/RtmpNHR351’ ‘~/tmp/scratch/RtmpNzAl2a’   ‘~/tmp/scratch/RtmpOiQWo6’ ‘~/tmp/scratch/RtmpPmSFf2’   ‘~/tmp/scratch/RtmpPw0wKW’ ‘~/tmp/scratch/RtmpQFudxa’   ‘~/tmp/scratch/RtmpQcurO9’ ‘~/tmp/scratch/RtmpQjFDBC’   ‘~/tmp/scratch/RtmpRgYbEQ’ ‘~/tmp/scratch/RtmpScaoLD’   ‘~/tmp/scratch/RtmpScmcwQ’ ‘~/tmp/scratch/RtmpSo4zxH’   ‘~/tmp/scratch/RtmpT6GINS’ ‘~/tmp/scratch/RtmpTmXfUv’   ‘~/tmp/scratch/RtmpToXhpw’ ‘~/tmp/scratch/RtmpUX7GBJ’   ‘~/tmp/scratch/RtmpUxuVa5’ ‘~/tmp/scratch/RtmpV1mjE1’   ‘~/tmp/scratch/RtmpVqRZFJ’ ‘~/tmp/scratch/RtmpVugi35’   ‘~/tmp/scratch/RtmpVwdOCn’ ‘~/tmp/scratch/RtmpW59Zre’   ‘~/tmp/scratch/RtmpWG9PxY’ ‘~/tmp/scratch/RtmpWLgt5N’   ‘~/tmp/scratch/RtmpXGKUVv’ ‘~/tmp/scratch/RtmpXdZRU8’   ‘~/tmp/scratch/RtmpXhzUMU’ ‘~/tmp/scratch/RtmpY9InKx’   ‘~/tmp/scratch/RtmpYpokJJ’ ‘~/tmp/scratch/RtmpZIaTi6’   ‘~/tmp/scratch/RtmpanEgnJ’ ‘~/tmp/scratch/RtmpbQhIWt’   ‘~/tmp/scratch/Rtmpbd0cX9’ ‘~/tmp/scratch/RtmpcIjBUr’   ‘~/tmp/scratch/RtmpcOpSZS’ ‘~/tmp/scratch/Rtmpe3auC8’   ‘~/tmp/scratch/RtmpeCAXrl’ ‘~/tmp/scratch/RtmpfCs7sS’   ‘~/tmp/scratch/RtmpfENVWK’ ‘~/tmp/scratch/RtmpfFnn0a’   ‘~/tmp/scratch/Rtmpfl07qm’ ‘~/tmp/scratch/Rtmpg6Leoj’   ‘~/tmp/scratch/RtmpgEOtmg’ ‘~/tmp/scratch/RtmpgHUtv4’   ‘~/tmp/scratch/RtmphP9EM6’ ‘~/tmp/scratch/Rtmphuz8tN’   ‘~/tmp/scratch/Rtmpi9lZBl’ ‘~/tmp/scratch/Rtmpitr9Cy’   ‘~/tmp/scratch/RtmpksDVQp’ ‘~/tmp/scratch/RtmpkuDVwP’   ‘~/tmp/scratch/Rtmpl1W8u5’ ‘~/tmp/scratch/Rtmpm4afKl’   ‘~/tmp/scratch/Rtmpm51IsI’ ‘~/tmp/scratch/RtmpmHBAxs’   ‘~/tmp/scratch/RtmpmUcuXx’ ‘~/tmp/scratch/RtmpnGOW63’   ‘~/tmp/scratch/Rtmpnkkiky’ ‘~/tmp/scratch/RtmpnliRnK’   ‘~/tmp/scratch/RtmpoWPMpN’ ‘~/tmp/scratch/RtmpoiSykg’   ‘~/tmp/scratch/Rtmpp0FHxr’ ‘~/tmp/scratch/RtmppzhKgi’   ‘~/tmp/scratch/Rtmpqn5LtP’ ‘~/tmp/scratch/Rtmps93n7D’   ‘~/tmp/scratch/RtmpsI5nOt’ ‘~/tmp/scratch/RtmpsP3xt3’   ‘~/tmp/scratch/RtmpsYohq9’ ‘~/tmp/scratch/RtmpslYgln’   ‘~/tmp/scratch/RtmpsnpkQD’ ‘~/tmp/scratch/RtmptS5nUJ’   ‘~/tmp/scratch/RtmptrpsMK’ ‘~/tmp/scratch/Rtmpux3ijU’   ‘~/tmp/scratch/RtmpvXWNft’ ‘~/tmp/scratch/RtmpvbMNW8’   ‘~/tmp/scratch/RtmpxuLHQm’ ‘~/tmp/scratch/Rtmpy7yGBg’   ‘~/tmp/scratch/RtmpygApJt’ ‘~/tmp/scratch/RtmpztYamX’   ‘~/tmp/scratch/quarto-session3c6a6bd1f71d92c6’   ‘~/tmp/scratch/xvfb-run.15jiRT’ ‘~/tmp/scratch/xvfb-run.2L7bwL’   ‘~/tmp/scratch/xvfb-run.32mEt2’ ‘~/tmp/scratch/xvfb-run.6cyt3j’   ‘~/tmp/scratch/xvfb-run.6ewJt8’ ‘~/tmp/scratch/xvfb-run.7IJhSs’   ‘~/tmp/scratch/xvfb-run.7UNrCl’ ‘~/tmp/scratch/xvfb-run.9J8cNp’   ‘~/tmp/scratch/xvfb-run.Ad8Ri0’ ‘~/tmp/scratch/xvfb-run.B0hSEr’   ‘~/tmp/scratch/xvfb-run.BQDQQd’ ‘~/tmp/scratch/xvfb-run.BTscDF’   ‘~/tmp/scratch/xvfb-run.BivzPW’ ‘~/tmp/scratch/xvfb-run.DMSsuk’   ‘~/tmp/scratch/xvfb-run.GBa7wG’ ‘~/tmp/scratch/xvfb-run.GTJqlW’   ‘~/tmp/scratch/xvfb-run.IRQX8m’ ‘~/tmp/scratch/xvfb-run.IVgXqa’   ‘~/tmp/scratch/xvfb-run.Jh0SPZ’ ‘~/tmp/scratch/xvfb-run.LRXqis’   ‘~/tmp/scratch/xvfb-run.Lie0dy’ ‘~/tmp/scratch/xvfb-run.MINlKp’   ‘~/tmp/scratch/xvfb-run.MvbciH’ ‘~/tmp/scratch/xvfb-run.NR8Dgy’   ‘~/tmp/scratch/xvfb-run.P4xLRZ’ ‘~/tmp/scratch/xvfb-run.PMhL6x’   ‘~/tmp/scratch/xvfb-run.Pk0L4Y’ ‘~/tmp/scratch/xvfb-run.QF8BD3’   ‘~/tmp/scratch/xvfb-run.QNIpLM’ ‘~/tmp/scratch/xvfb-run.Qurj3j’   ‘~/tmp/scratch/xvfb-run.R157NS’ ‘~/tmp/scratch/xvfb-run.RN7PsH’   ‘~/tmp/scratch/xvfb-run.RzdYSx’ ‘~/tmp/scratch/xvfb-run.WILqoW’   ‘~/tmp/scratch/xvfb-run.bEYcIr’ ‘~/tmp/scratch/xvfb-run.cerUvA’   ‘~/tmp/scratch/xvfb-run.d9zvvL’ ‘~/tmp/scratch/xvfb-run.iDJ3lX’   ‘~/tmp/scratch/xvfb-run.lZKyfY’ ‘~/tmp/scratch/xvfb-run.n4glng’   ‘~/tmp/scratch/xvfb-run.nOmFi4’ ‘~/tmp/scratch/xvfb-run.oCsy4E’   ‘~/tmp/scratch/xvfb-run.pSzsda’ ‘~/tmp/scratch/xvfb-run.qADb4h’   ‘~/tmp/scratch/xvfb-run.sTTFox’ ‘~/tmp/scratch/xvfb-run.uLzIRF’   ‘~/tmp/scratch/xvfb-run.wNwRWS’ ‘~/tmp/scratch/xvfb-run.wVWjOr’   ‘~/tmp/scratch/xvfb-run.xB9cKK’ ‘~/tmp/scratch/xvfb-run.xSDrCG’   ‘~/tmp/scratch/xvfb-run.zBiYrz’
• DONE

Status: 1 NOTE