- using R Under development (unstable) (2025-05-15 r88204)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-19) 14.2.0
GNU Fortran (Debian 14.2.0-19) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘immuneSIM/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘immuneSIM’ version ‘0.8.7’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [0s/0s] NOTE
Maintainer: ‘Cédric R. Weber <cedric.weber@bsse.ethz.ch>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘insertions_and_deletion_lengths_df.Rd’:
https://doi.org/10.1016/j.celrep.2017.04.054
File ‘length_dist_simulation.Rd’:
https://doi.org/10.1016/j.celrep.2017.04.054
File ‘list_germline_genes_allele_01.Rd’:
https://doi.org/10.1371/journal.pone.0160853
https://doi.org/10.1038/ng.3822
https://doi.org/10.1016/j.celrep.2017.04.054
https://doi.org/10.7554/eLife.22057
File ‘one_spot_df.Rd’:
https://doi.org/10.1093/bioinformatics/btx533
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘immuneSIM’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/6s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
- checking whether the package can be unloaded cleanly ... [4s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
- checking loading without being on the library search path ... [4s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [26s/34s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking LazyData ... INFO
'LazyData' is specified without a 'data' directory
- checking R/sysdata.rda ... OK
- checking examples ... [12s/13s] OK
- checking PDF version of manual ... [4s/5s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE