• using R Under development (unstable) (2025-05-15 r88204)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘immuneSIM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘immuneSIM’ version ‘0.8.7’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [0s/0s] NOTE Maintainer: ‘Cédric R. Weber <cedric.weber@bsse.ethz.ch>’ Found the following URLs which should use \doi (with the DOI name only):   File ‘insertions_and_deletion_lengths_df.Rd’:     https://doi.org/10.1016/j.celrep.2017.04.054   File ‘length_dist_simulation.Rd’:     https://doi.org/10.1016/j.celrep.2017.04.054   File ‘list_germline_genes_allele_01.Rd’:     https://doi.org/10.1371/journal.pone.0160853     https://doi.org/10.1038/ng.3822     https://doi.org/10.1016/j.celrep.2017.04.054     https://doi.org/10.7554/eLife.22057   File ‘one_spot_df.Rd’:     https://doi.org/10.1093/bioinformatics/btx533
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘immuneSIM’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/6s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the package can be unloaded cleanly ... [4s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [26s/34s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking R/sysdata.rda ... OK
• checking examples ... [12s/13s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE