• using R Under development (unstable) (2023-06-01 r84481)
• using platform: x86_64-pc-linux-gnu
• R was compiled by
      gcc-12 (Debian 12.2.0-14) 12.2.0
      GNU Fortran (Debian 12.2.0-14) 12.2.0
• running under: Debian GNU/Linux 12 (bookworm)
• using session charset: UTF-8
• checking for file ‘immunarch/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘immunarch’ version ‘0.9.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘immunarch’ can be installed ... OK
• used C++ compiler: ‘g++-12 (Debian 12.2.0-14) 12.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/11s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/9s] OK
• checking whether the package can be unloaded cleanly ... [6s/8s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/8s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/8s] OK
• checking loading without being on the library search path ... [6s/8s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [47s/75s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/3s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [146s/231s] OK
  Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
  repDiversity 7.640 0.069 14.527
  vis.immunr_dynamics 6.838 0.164 8.805
  seqCluster 6.436 0.256 13.830
  vis_public_clonotypes 6.580 0.055 7.416
  vis.immunr_gene_usage 6.409 0.058 9.908
  trackClonotypes 6.210 0.173 8.825
  vis_public_frequencies 6.168 0.076 8.295
  vis.immunr_public_repertoire 4.663 0.030 7.577
  vis_textlogo 4.490 0.063 6.621
  pubRepStatistics 4.235 0.081 6.012
  vis 4.211 0.086 7.205
  vis.immunr_public_statistics 4.115 0.077 5.648
  repSave 1.500 0.214 6.252
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [9s/14s] OK
• checking PDF version of manual ... [7s/15s] OK
• checking HTML version of manual ... [3s/8s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK