• using R Under development (unstable) (2026-09-08 r90509)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.2.0-1) 16.2.0     GNU Fortran (Debian 16.2.0-1) 16.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-09-09 15:39:25 UTC
• checking for file ‘hydroloom/DESCRIPTION’ ... OK
• this is package ‘hydroloom’ version ‘1.2.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘hydroloom’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/20s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/18s] ERROR Running examples in ‘hydroloom-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: disambiguate_indexes > ### Title: Disambiguate Flowline Indexes > ### Aliases: disambiguate_indexes > > ### ** Examples > > if (require(nhdplusTools)) { + source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) + + hydro_location <- sf::st_sf(id = c(1, 2, 3), + geom = sf::st_sfc(list(sf::st_point(c(-76.86934, 39.49328)), + sf::st_point(c(-76.91711, 39.40884)), + sf::st_point(c(-76.88081, 39.36354))), + crs = 4326), + totda = c(23.6, 7.3, 427.9), + nameid = c("Patapsco", "", "Falls Run River")) + + indexes <- index_points_to_lines(sample_flines, + hydro_location, + search_radius = units::set_units(0.2, "degrees"), + max_matches = 10) + + disambiguate_indexes(indexes, + dplyr::select(sample_flines, COMID, TotDASqKM), + dplyr::select(hydro_location, id, totda)) + + result <- disambiguate_indexes(indexes, + dplyr::select(sample_flines, COMID, GNIS_NAME), + dplyr::select(hydro_location, id, nameid)) + + result[result$point_id == 1, ] + + result[result$point_id == 2, ] + + result[result$point_id == 3, ] + } Loading required package: nhdplusTools nhdplusTools has been superseded by hydrogeofetch and will be archived from CRAN in October 2027. Please migrate to: Blodgett, D. 2026, hydrogeofetch: Hydrologic Geospatial Fabric Extraction Tool Chain, https://doi.org/10.5066/P13UWPUR Attaching package: ‘nhdplusTools’ The following object is masked from ‘package:hydroloom’:     make_node_topology Request failed [404]. Retrying in 1 seconds... Request failed [404]. Retrying in 1.5 seconds... Error: Cannot open "/home/hornik/tmp/scratch/RtmpXm7f5W/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats. Execution halted Examples with CPU (user + system) or elapsed time > 5s               user system elapsed add_measures 6.866 0.107 7.548
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [45s/77s] ERROR   Running ‘testthat.R’ [44s/77s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(hydroloom)   >   > test_check("hydroloom")        |     | | 0%     |     |==================== | 29%     |     |========================================================== | 82%     |     |===================================================================== | 98%     |     |======================================================================| 100%        |     | | 0%     |     |== | 3%     |     |===================== | 31%     |     |========================================================== | 82%     |     |===================================================================== | 98%     |     |======================================================================| 100%        |     | | 0%     |     |==================== | 29%     |     |========================================================== | 82%     |     |===================================================================== | 98%     |     |======================================================================| 100%        |     | | 0%     |     |================ | 23%     |     |=========================================== | 61%     |     |================================================================= | 94%     |     |======================================================================| 100%        |     | | 0%     |     |==================== | 29%     |     |========================================================== | 82%     |     |===================================================================== | 98%     |     |======================================================================| 100%   Request failed [404]. Retrying in 1.6 seconds...   Request failed [404]. Retrying in 4 seconds...   Saving _problems/test_add_measures-35.R   Request failed [404]. Retrying in 2 seconds...   Request failed [404]. Retrying in 1.3 seconds...   Saving _problems/test_add_pfafstetter-7.R   Request failed [404]. Retrying in 1.1 seconds...   Request failed [404]. Retrying in 1 seconds...   Saving _problems/test_get_hydro_location-4.R   Request failed [404]. Retrying in 1 seconds...   Request failed [404]. Retrying in 1.5 seconds...   Saving _problems/test_index-6.R   Request failed [404]. Retrying in 1 seconds...   Request failed [404]. Retrying in 3 seconds...   Saving _problems/test_index-57.R   converting hy_node to hy_topo via add_toids(). For large networks, call add_toids() explicitly to avoid repeated conversion.   [ FAIL 5 | WARN 16 | SKIP 1 | PASS 657 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • On CRAN (1): 'test_add_levelpaths.R:163:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_add_measures.R:35:3'): mainstem ────────────────────────────────   <Rcpp::exception/C++Error/error/condition>   Error: Cannot open "/home/hornik/tmp/scratch/RtmpbdXK2p/nhdplusTools/3dhp_yahara_flowlines.geojson"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.   Backtrace:       ▆    1. └─sf::read_sf(sample_3dhp_data) at test_add_measures.R:35:3    2. ├─sf::st_read(...)    3. └─sf:::st_read.character(...)    4. └─sf:::CPL_read_ogr(...)   ── Error ('test_add_pfafstetter.R:7:3'): get_pfaf ──────────────────────────────   Error in `zip::unzip(d, exdir = work_dir)`: Cannot open zip file `/home/hornik/tmp/scratch/RtmpbdXK2p/nhdplusTools/03_sub.zip`   Backtrace:        ▆     1. ├─base::source(system.file("extdata/nhdplushr_data.R", package = "nhdplusTools")) at test_add_pfafstetter.R:7:3     2. │ ├─base::withVisible(eval(ei, envir))     3. │ └─base::eval(ei, envir)     4. │ └─base::eval(ei, envir)     5. ├─global download_pkg_data(...)     6. │ └─zip::unzip(d, exdir = work_dir)     7. │ └─zip:::call_with_cleanup(...)     8. │ └─base::withCallingHandlers(...)     9. └─base::.handleSimpleError(...)    10. └─zip (local) h(simpleError(msg, call))   ── Error ('test_get_hydro_location.R:4:3'): get location ───────────────────────   <Rcpp::exception/C++Error/error/condition>   Error: Cannot open "/home/hornik/tmp/scratch/RtmpbdXK2p/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.   Backtrace:       ▆    1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_get_hydro_location.R:4:3    2. │ ├─base::withVisible(eval(ei, envir))    3. │ └─base::eval(ei, envir)    4. │ └─base::eval(ei, envir)    5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))    6. ├─sf::st_read(...)    7. └─sf:::st_read.character(...)    8. └─sf:::CPL_read_ogr(...)   ── Error ('test_index.R:6:3'): index to waterbodies ────────────────────────────   <Rcpp::exception/C++Error/error/condition>   Error: Cannot open "/home/hornik/tmp/scratch/RtmpbdXK2p/nhdplusTools/sample_natseamless.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.   Backtrace:       ▆    1. └─sf::read_sf(sample_data, "NHDWaterbody") at test_index.R:6:3    2. ├─sf::st_read(...)    3. └─sf:::st_read.character(...)    4. └─sf:::CPL_read_ogr(...)   ── Error ('test_index.R:57:3'): (code run outside of `test_that()`) ────────────   <Rcpp::exception/C++Error/error/condition>   Error: Cannot open "/home/hornik/tmp/scratch/RtmpbdXK2p/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.   Backtrace:       ▆    1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_index.R:57:3    2. │ ├─base::withVisible(eval(ei, envir))    3. │ └─base::eval(ei, envir)    4. │ └─base::eval(ei, envir)    5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))    6. ├─sf::st_read(...)    7. └─sf:::st_read.character(...)    8. └─sf:::CPL_read_ogr(...)      [ FAIL 5 | WARN 16 | SKIP 1 | PASS 657 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [3s/4s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs