• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:28:22 UTC
• checking for file ‘htsDegenerateR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘htsDegenerateR’ version ‘0.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘htsDegenerateR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [4s/4s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp16QWUq’ ‘~/tmp/scratch/Rtmp1G8sXs’   ‘~/tmp/scratch/Rtmp1pUJhz’ ‘~/tmp/scratch/Rtmp2XrFKr’   ‘~/tmp/scratch/Rtmp3OfElw’ ‘~/tmp/scratch/Rtmp468p4J’   ‘~/tmp/scratch/Rtmp4l1Kv7’ ‘~/tmp/scratch/Rtmp5JGBaX’   ‘~/tmp/scratch/Rtmp5Sv5SD’ ‘~/tmp/scratch/Rtmp5gWEd7’   ‘~/tmp/scratch/Rtmp5j1aad’ ‘~/tmp/scratch/Rtmp5xhLhn’   ‘~/tmp/scratch/Rtmp6hkM8x’ ‘~/tmp/scratch/Rtmp75wWIs’   ‘~/tmp/scratch/Rtmp8NzMI6’ ‘~/tmp/scratch/RtmpA9WUMw’   ‘~/tmp/scratch/RtmpCBwEJt’ ‘~/tmp/scratch/RtmpCrpeIM’   ‘~/tmp/scratch/RtmpDo6dlM’ ‘~/tmp/scratch/RtmpDpJmsg’   ‘~/tmp/scratch/RtmpDulWOQ’ ‘~/tmp/scratch/RtmpEk6m9x’   ‘~/tmp/scratch/RtmpGsuY9H’ ‘~/tmp/scratch/RtmpHunJxt’   ‘~/tmp/scratch/RtmpIqzMUL’ ‘~/tmp/scratch/RtmpJL19tq’   ‘~/tmp/scratch/RtmpJSCinJ’ ‘~/tmp/scratch/RtmpJSY4k7’   ‘~/tmp/scratch/RtmpKEmc3H’ ‘~/tmp/scratch/RtmpL8Azso’   ‘~/tmp/scratch/RtmpLErJpb’ ‘~/tmp/scratch/RtmpMJ605Y’   ‘~/tmp/scratch/RtmpMtqpKT’ ‘~/tmp/scratch/RtmpMwMSI3’   ‘~/tmp/scratch/RtmpQ9pnZw’ ‘~/tmp/scratch/RtmpQQaNFv’   ‘~/tmp/scratch/RtmpQVMqoU’ ‘~/tmp/scratch/RtmpQqKFwm’   ‘~/tmp/scratch/RtmpS6FMwY’ ‘~/tmp/scratch/RtmpTU7Vcm’   ‘~/tmp/scratch/RtmpTVNc8N’ ‘~/tmp/scratch/RtmpTZQvZg’   ‘~/tmp/scratch/RtmpTsX3T0’ ‘~/tmp/scratch/RtmpVGLOaL’   ‘~/tmp/scratch/RtmpVTNujU’ ‘~/tmp/scratch/RtmpWCv04t’   ‘~/tmp/scratch/RtmpX6cqH8’ ‘~/tmp/scratch/RtmpXHGcxK’   ‘~/tmp/scratch/RtmpXuQUvr’ ‘~/tmp/scratch/RtmpXz2IjV’   ‘~/tmp/scratch/RtmpYJuYYc’ ‘~/tmp/scratch/RtmpYpuhug’   ‘~/tmp/scratch/RtmpZQOlPi’ ‘~/tmp/scratch/RtmpaAGKgX’   ‘~/tmp/scratch/RtmpaF43tZ’ ‘~/tmp/scratch/RtmpaHktAT’   ‘~/tmp/scratch/RtmpabbEVO’ ‘~/tmp/scratch/Rtmpb2htwK’   ‘~/tmp/scratch/RtmpbZqqD7’ ‘~/tmp/scratch/Rtmpbb5Y6z’   ‘~/tmp/scratch/Rtmpbjx4ZH’ ‘~/tmp/scratch/RtmpdEsBrP’   ‘~/tmp/scratch/RtmpdIMjkq’ ‘~/tmp/scratch/RtmpdxhGbX’   ‘~/tmp/scratch/RtmpdzRsA3’ ‘~/tmp/scratch/RtmpeZCJSW’   ‘~/tmp/scratch/RtmpenR0uT’ ‘~/tmp/scratch/Rtmpew5CXe’   ‘~/tmp/scratch/RtmpfIp2nk’ ‘~/tmp/scratch/RtmpfWcfLK’   ‘~/tmp/scratch/RtmpgcXbNc’ ‘~/tmp/scratch/Rtmpgles1R’   ‘~/tmp/scratch/RtmphDMFU3’ ‘~/tmp/scratch/RtmphVoOfO’   ‘~/tmp/scratch/Rtmpi08iMS’ ‘~/tmp/scratch/Rtmpiqo50S’   ‘~/tmp/scratch/Rtmpj0AGgz’ ‘~/tmp/scratch/Rtmpj5nuY4’   ‘~/tmp/scratch/RtmpkFbOrf’ ‘~/tmp/scratch/Rtmpm7iWE3’   ‘~/tmp/scratch/RtmpmDHpi0’ ‘~/tmp/scratch/RtmpmYLBnk’   ‘~/tmp/scratch/RtmpnK5KtY’ ‘~/tmp/scratch/Rtmpo7gY2t’   ‘~/tmp/scratch/Rtmpq0H6lH’ ‘~/tmp/scratch/Rtmpqdo6sO’   ‘~/tmp/scratch/RtmpraTw5J’ ‘~/tmp/scratch/RtmproJT1r’   ‘~/tmp/scratch/RtmpsEs3WY’ ‘~/tmp/scratch/RtmpsWv9po’   ‘~/tmp/scratch/RtmpuBSVLz’ ‘~/tmp/scratch/RtmpuOJf6k’   ‘~/tmp/scratch/RtmpulbLkf’ ‘~/tmp/scratch/Rtmpv1AIKX’   ‘~/tmp/scratch/RtmpvJpNo2’ ‘~/tmp/scratch/RtmpvWnjIM’   ‘~/tmp/scratch/ccjLpwPw.s’   ‘~/tmp/scratch/quarto-session72748e5fe0f7ec97’   ‘~/tmp/scratch/xvfb-run.1z3rDj’ ‘~/tmp/scratch/xvfb-run.3p3VVP’   ‘~/tmp/scratch/xvfb-run.4OncSb’ ‘~/tmp/scratch/xvfb-run.7PeF1X’   ‘~/tmp/scratch/xvfb-run.AoT9kB’ ‘~/tmp/scratch/xvfb-run.BUWNPx’   ‘~/tmp/scratch/xvfb-run.BjOSQN’ ‘~/tmp/scratch/xvfb-run.JeqhBc’   ‘~/tmp/scratch/xvfb-run.Lo7M9c’ ‘~/tmp/scratch/xvfb-run.SbtLup’   ‘~/tmp/scratch/xvfb-run.TB5xsf’ ‘~/tmp/scratch/xvfb-run.UV7keI’   ‘~/tmp/scratch/xvfb-run.V7v2tq’ ‘~/tmp/scratch/xvfb-run.YkehHG’   ‘~/tmp/scratch/xvfb-run.cghbEs’ ‘~/tmp/scratch/xvfb-run.cwtnnw’   ‘~/tmp/scratch/xvfb-run.dNTfvU’ ‘~/tmp/scratch/xvfb-run.foMhJF’   ‘~/tmp/scratch/xvfb-run.lfE2QW’ ‘~/tmp/scratch/xvfb-run.pE3mtB’   ‘~/tmp/scratch/xvfb-run.sPVu3A’ ‘~/tmp/scratch/xvfb-run.uKdCu6’   ‘~/tmp/scratch/xvfb-run.wo7EUo’ ‘~/tmp/scratch/xvfb-run.z0fK75’
• DONE

Status: 1 NOTE