• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:27:57 UTC
• checking for file ‘htsDegenerateR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘htsDegenerateR’ version ‘0.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘htsDegenerateR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [4s/5s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp05ACdT’ ‘~/tmp/scratch/Rtmp0pjRwZ’   ‘~/tmp/scratch/Rtmp225xjw’ ‘~/tmp/scratch/Rtmp29tmcn’   ‘~/tmp/scratch/Rtmp3kMWVR’ ‘~/tmp/scratch/Rtmp3rS5Vg’   ‘~/tmp/scratch/Rtmp3vEZJD’ ‘~/tmp/scratch/Rtmp46fkDO’   ‘~/tmp/scratch/Rtmp4oFD80’ ‘~/tmp/scratch/Rtmp5mNzD4’   ‘~/tmp/scratch/Rtmp6D7Ncu’ ‘~/tmp/scratch/Rtmp7B62gY’   ‘~/tmp/scratch/Rtmp7Ys1zL’ ‘~/tmp/scratch/Rtmp8V87tI’   ‘~/tmp/scratch/RtmpBZQH1W’ ‘~/tmp/scratch/RtmpBp8HZJ’   ‘~/tmp/scratch/RtmpCJOhFa’ ‘~/tmp/scratch/RtmpEHwdld’   ‘~/tmp/scratch/RtmpF1hAJi’ ‘~/tmp/scratch/RtmpFRUQxE’   ‘~/tmp/scratch/RtmpFjGkZ8’ ‘~/tmp/scratch/RtmpGXf5ym’   ‘~/tmp/scratch/RtmpHtxg74’ ‘~/tmp/scratch/RtmpIkCh0k’   ‘~/tmp/scratch/RtmpIkVNfk’ ‘~/tmp/scratch/RtmpJS8v8w’   ‘~/tmp/scratch/RtmpK0G1zZ’ ‘~/tmp/scratch/RtmpK2zdq4’   ‘~/tmp/scratch/RtmpKIIoJM’ ‘~/tmp/scratch/RtmpKfGehP’   ‘~/tmp/scratch/RtmpL7hrSn’ ‘~/tmp/scratch/RtmpLnNz0g’   ‘~/tmp/scratch/RtmpLzZ7Bf’ ‘~/tmp/scratch/RtmpMiWBum’   ‘~/tmp/scratch/RtmpNTvAmf’ ‘~/tmp/scratch/RtmpP70DBm’   ‘~/tmp/scratch/RtmpPiNnNB’   ‘~/tmp/scratch/RtmpPiNnNBroute_star_cache_test_v_NZ_lat-long_at_30km_test_aircraft.rda’   ‘~/tmp/scratch/RtmpQfq5WF’ ‘~/tmp/scratch/RtmpQz1Mqb’   ‘~/tmp/scratch/RtmpRF9XmH’ ‘~/tmp/scratch/RtmpRUU1iN’   ‘~/tmp/scratch/RtmpRoK2sU’ ‘~/tmp/scratch/RtmpSNJ4GR’   ‘~/tmp/scratch/RtmpSYdgbR’ ‘~/tmp/scratch/RtmpTXftOV’   ‘~/tmp/scratch/RtmpTbPNOZ’ ‘~/tmp/scratch/RtmpU0NI7S’   ‘~/tmp/scratch/RtmpVoem7M’ ‘~/tmp/scratch/RtmpWWtt4I’   ‘~/tmp/scratch/RtmpXjhIzm’ ‘~/tmp/scratch/RtmpY1uQMi’   ‘~/tmp/scratch/RtmpY2Z6o5’ ‘~/tmp/scratch/RtmpYJgHAC’   ‘~/tmp/scratch/RtmpYbt3wV’ ‘~/tmp/scratch/RtmpZOElKw’   ‘~/tmp/scratch/RtmpZXMFed’ ‘~/tmp/scratch/RtmpZkLcNG’   ‘~/tmp/scratch/RtmpaK2CFS’ ‘~/tmp/scratch/RtmpcENHkr’   ‘~/tmp/scratch/RtmpcTVSsB’ ‘~/tmp/scratch/Rtmpd1ilU6’   ‘~/tmp/scratch/RtmpdNyOA8’ ‘~/tmp/scratch/RtmpdZxLY4’   ‘~/tmp/scratch/RtmpdeMjMw’ ‘~/tmp/scratch/RtmpeQdYcJ’   ‘~/tmp/scratch/RtmpekXGNl’ ‘~/tmp/scratch/Rtmpeq2Unn’   ‘~/tmp/scratch/RtmpfiV9PN’ ‘~/tmp/scratch/RtmpfiYtXe’   ‘~/tmp/scratch/Rtmpg7njRj’ ‘~/tmp/scratch/RtmpgjHoSI’   ‘~/tmp/scratch/RtmphSckOJ’ ‘~/tmp/scratch/RtmpiFm0Qj’   ‘~/tmp/scratch/Rtmpisek0i’ ‘~/tmp/scratch/Rtmpk245cZ’   ‘~/tmp/scratch/Rtmpk5gRTQ’ ‘~/tmp/scratch/RtmpkvQ9XV’   ‘~/tmp/scratch/Rtmpkz368C’ ‘~/tmp/scratch/Rtmplr1uqm’   ‘~/tmp/scratch/Rtmpm2sTIG’ ‘~/tmp/scratch/RtmpmTsIYh’   ‘~/tmp/scratch/RtmpnmeBqh’ ‘~/tmp/scratch/Rtmpo7BD79’   ‘~/tmp/scratch/RtmpowftQb’ ‘~/tmp/scratch/Rtmpp1Z3Pe’   ‘~/tmp/scratch/RtmprQBp4H’ ‘~/tmp/scratch/RtmprkidJk’   ‘~/tmp/scratch/Rtmpt1Pa3V’ ‘~/tmp/scratch/RtmpubdbSU’   ‘~/tmp/scratch/RtmpuiHvfO’ ‘~/tmp/scratch/RtmpuuSktE’   ‘~/tmp/scratch/RtmpvhZN3J’ ‘~/tmp/scratch/RtmpvxKGCs’   ‘~/tmp/scratch/Rtmpxgl3NX’ ‘~/tmp/scratch/Rtmpy92Vjl’   ‘~/tmp/scratch/Rtmpz9l3lE’   ‘~/tmp/scratch/quarto-session10fe80d5ef91aced’   ‘~/tmp/scratch/xvfb-run.1dzq7a’ ‘~/tmp/scratch/xvfb-run.34fCDh’   ‘~/tmp/scratch/xvfb-run.396nlc’ ‘~/tmp/scratch/xvfb-run.3g2qmu’   ‘~/tmp/scratch/xvfb-run.4WBbtQ’ ‘~/tmp/scratch/xvfb-run.9lhhRr’   ‘~/tmp/scratch/xvfb-run.CkbSLZ’ ‘~/tmp/scratch/xvfb-run.G3SeyM’   ‘~/tmp/scratch/xvfb-run.Hfb29u’ ‘~/tmp/scratch/xvfb-run.I8YA7n’   ‘~/tmp/scratch/xvfb-run.Jaaun8’ ‘~/tmp/scratch/xvfb-run.K2JeS6’   ‘~/tmp/scratch/xvfb-run.NvxgSX’ ‘~/tmp/scratch/xvfb-run.PSJ8FR’   ‘~/tmp/scratch/xvfb-run.RLEkk7’ ‘~/tmp/scratch/xvfb-run.VNdMRx’   ‘~/tmp/scratch/xvfb-run.XvtTnw’ ‘~/tmp/scratch/xvfb-run.dx7uNb’   ‘~/tmp/scratch/xvfb-run.eTrC9T’ ‘~/tmp/scratch/xvfb-run.f3vHnd’   ‘~/tmp/scratch/xvfb-run.gjzDHF’ ‘~/tmp/scratch/xvfb-run.i5R67f’   ‘~/tmp/scratch/xvfb-run.jWAaz9’ ‘~/tmp/scratch/xvfb-run.lYXBxz’   ‘~/tmp/scratch/xvfb-run.ooqcBR’ ‘~/tmp/scratch/xvfb-run.tE6Sj9’   ‘~/tmp/scratch/xvfb-run.yyDxdz’
• DONE

Status: 1 NOTE