• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:27:14 UTC
• checking for file ‘homologene/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘homologene’ version ‘1.4.68.19.3.27’
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘homologene’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [15s/17s] OK   Running ‘testthat.R’ [15s/17s]
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0b51HB’ ‘~/tmp/scratch/Rtmp1NIAiK’   ‘~/tmp/scratch/Rtmp2AurUG’ ‘~/tmp/scratch/Rtmp2zNWfm’   ‘~/tmp/scratch/Rtmp314bub’ ‘~/tmp/scratch/Rtmp3yaEtj’   ‘~/tmp/scratch/Rtmp3z5m6D’ ‘~/tmp/scratch/Rtmp45le3D’   ‘~/tmp/scratch/Rtmp5mGuF3’ ‘~/tmp/scratch/Rtmp5nP1If’   ‘~/tmp/scratch/Rtmp7jRjzA’ ‘~/tmp/scratch/Rtmp87HqO9’   ‘~/tmp/scratch/Rtmp96W39Q’ ‘~/tmp/scratch/Rtmp9ftxwg’   ‘~/tmp/scratch/RtmpA2b0Qg’ ‘~/tmp/scratch/RtmpABdhn8’   ‘~/tmp/scratch/RtmpAutl5P’ ‘~/tmp/scratch/RtmpB9NLVP’   ‘~/tmp/scratch/RtmpBIaekE’ ‘~/tmp/scratch/RtmpBmEdXh’   ‘~/tmp/scratch/RtmpCCNYH1’ ‘~/tmp/scratch/RtmpCUzSvI’   ‘~/tmp/scratch/RtmpCc6v0K’ ‘~/tmp/scratch/RtmpCdTpz6’   ‘~/tmp/scratch/RtmpCg7Kvt’ ‘~/tmp/scratch/RtmpD6Nefb’   ‘~/tmp/scratch/RtmpE5MFpu’ ‘~/tmp/scratch/RtmpEDPxml’   ‘~/tmp/scratch/RtmpF56hln’ ‘~/tmp/scratch/RtmpFA5dtR’   ‘~/tmp/scratch/RtmpFpNhuy’ ‘~/tmp/scratch/RtmpGf55WA’   ‘~/tmp/scratch/RtmpGqKodj’ ‘~/tmp/scratch/RtmpHcdDiD’   ‘~/tmp/scratch/RtmpHrjWBa’ ‘~/tmp/scratch/RtmpITgw4W’   ‘~/tmp/scratch/RtmpIiGzN2’ ‘~/tmp/scratch/RtmpK30gBx’   ‘~/tmp/scratch/RtmpLEnakT’ ‘~/tmp/scratch/RtmpLSlcpE’   ‘~/tmp/scratch/RtmpMV1EzE’ ‘~/tmp/scratch/RtmpMcnPU0’   ‘~/tmp/scratch/RtmpMm7tUJ’ ‘~/tmp/scratch/RtmpNZfawq’   ‘~/tmp/scratch/RtmpPiUSXa’ ‘~/tmp/scratch/RtmpRKIktW’   ‘~/tmp/scratch/RtmpRzd4Di’ ‘~/tmp/scratch/RtmpSNH9VF’   ‘~/tmp/scratch/RtmpSckrka’ ‘~/tmp/scratch/RtmpSzM12L’   ‘~/tmp/scratch/RtmpTCKXXV’ ‘~/tmp/scratch/RtmpThamqE’   ‘~/tmp/scratch/RtmpVNVBv4’ ‘~/tmp/scratch/RtmpVUfVbo’   ‘~/tmp/scratch/RtmpW3GNcE’ ‘~/tmp/scratch/RtmpWKLdRO’   ‘~/tmp/scratch/RtmpWKgC0j’ ‘~/tmp/scratch/RtmpWMawLR’   ‘~/tmp/scratch/RtmpWo2Djr’ ‘~/tmp/scratch/RtmpYAV2D6’   ‘~/tmp/scratch/RtmpYeHoJ1’ ‘~/tmp/scratch/RtmpZcnwxv’   ‘~/tmp/scratch/RtmpZoSoIy’ ‘~/tmp/scratch/RtmpaIBMu5’   ‘~/tmp/scratch/RtmpaV1onO’ ‘~/tmp/scratch/Rtmpaxrn8y’   ‘~/tmp/scratch/RtmpbFbeWm’ ‘~/tmp/scratch/RtmpbdNkNv’   ‘~/tmp/scratch/Rtmpblr5zc’ ‘~/tmp/scratch/RtmpcHNbFY’   ‘~/tmp/scratch/RtmpcfINMz’ ‘~/tmp/scratch/RtmpcsLc3Y’   ‘~/tmp/scratch/Rtmpg0wMQL’ ‘~/tmp/scratch/Rtmpg6RS0i’   ‘~/tmp/scratch/RtmpgwPm14’ ‘~/tmp/scratch/RtmphOFqie’   ‘~/tmp/scratch/RtmphZrc3n’ ‘~/tmp/scratch/RtmpiV3l6v’   ‘~/tmp/scratch/RtmpiX1E4K’ ‘~/tmp/scratch/RtmpiiveS8’   ‘~/tmp/scratch/RtmpjRky2g’ ‘~/tmp/scratch/RtmplW7IRi’   ‘~/tmp/scratch/RtmpmEqfzT’ ‘~/tmp/scratch/Rtmpn48H7Y’   ‘~/tmp/scratch/Rtmpn9ijes’ ‘~/tmp/scratch/RtmpnMjCk5’   ‘~/tmp/scratch/RtmpnPA2vb’ ‘~/tmp/scratch/RtmpnTLrsi’   ‘~/tmp/scratch/RtmpnWwKhc’ ‘~/tmp/scratch/Rtmpo59Lgw’   ‘~/tmp/scratch/RtmpoR3cl6’ ‘~/tmp/scratch/RtmpoSvpVl’   ‘~/tmp/scratch/Rtmpozusse’ ‘~/tmp/scratch/Rtmpp2AgxN’   ‘~/tmp/scratch/Rtmppupxyr’ ‘~/tmp/scratch/RtmpqNzxVi’   ‘~/tmp/scratch/Rtmpr1cwFM’ ‘~/tmp/scratch/RtmprxYv3f’   ‘~/tmp/scratch/RtmpsRSLsY’ ‘~/tmp/scratch/Rtmpt5n6kO’   ‘~/tmp/scratch/RtmptpaHnT’ ‘~/tmp/scratch/Rtmpu1zTDg’   ‘~/tmp/scratch/RtmpuJ4D2g’ ‘~/tmp/scratch/RtmpunivQ8’   ‘~/tmp/scratch/Rtmpv2i0BH’ ‘~/tmp/scratch/RtmpvXZKAl’   ‘~/tmp/scratch/Rtmpvdgxvd’ ‘~/tmp/scratch/RtmpwAj2ab’   ‘~/tmp/scratch/RtmpwSzl7I’ ‘~/tmp/scratch/RtmpwZ41Ec’   ‘~/tmp/scratch/RtmpxQWmlR’ ‘~/tmp/scratch/RtmpxfiWeK’   ‘~/tmp/scratch/RtmpxfrV9g’ ‘~/tmp/scratch/RtmpxmDt9L’   ‘~/tmp/scratch/Rtmpy6vWqk’ ‘~/tmp/scratch/RtmpyfPyJZ’   ‘~/tmp/scratch/Rtmpyfzhlj’ ‘~/tmp/scratch/Rtmpzbhbq0’   ‘~/tmp/scratch/RtmpzkC5aZ’ ‘~/tmp/scratch/xvfb-run.2ddq6x’   ‘~/tmp/scratch/xvfb-run.4dKL1X’ ‘~/tmp/scratch/xvfb-run.6s2Rvm’   ‘~/tmp/scratch/xvfb-run.7sbert’ ‘~/tmp/scratch/xvfb-run.DTWdtG’   ‘~/tmp/scratch/xvfb-run.EGDu4X’ ‘~/tmp/scratch/xvfb-run.GwrQaJ’   ‘~/tmp/scratch/xvfb-run.IKFite’ ‘~/tmp/scratch/xvfb-run.Ifa3lq’   ‘~/tmp/scratch/xvfb-run.Io5XOs’ ‘~/tmp/scratch/xvfb-run.JVGaJm’   ‘~/tmp/scratch/xvfb-run.NzFOZf’ ‘~/tmp/scratch/xvfb-run.S9q2Ss’   ‘~/tmp/scratch/xvfb-run.SWMEr2’ ‘~/tmp/scratch/xvfb-run.VNrIwf’   ‘~/tmp/scratch/xvfb-run.WTE8OB’ ‘~/tmp/scratch/xvfb-run.Y4ZivA’   ‘~/tmp/scratch/xvfb-run.YEbtC0’ ‘~/tmp/scratch/xvfb-run.ZgwPjh’   ‘~/tmp/scratch/xvfb-run.Zi7O5w’ ‘~/tmp/scratch/xvfb-run.anoHip’   ‘~/tmp/scratch/xvfb-run.atLld6’ ‘~/tmp/scratch/xvfb-run.ay7gn5’   ‘~/tmp/scratch/xvfb-run.b22gmI’ ‘~/tmp/scratch/xvfb-run.bCYVRE’   ‘~/tmp/scratch/xvfb-run.bcONyW’ ‘~/tmp/scratch/xvfb-run.deLArq’   ‘~/tmp/scratch/xvfb-run.doT4D3’ ‘~/tmp/scratch/xvfb-run.dwFJKD’   ‘~/tmp/scratch/xvfb-run.eBfwI9’ ‘~/tmp/scratch/xvfb-run.hzTX7X’   ‘~/tmp/scratch/xvfb-run.oARpVu’ ‘~/tmp/scratch/xvfb-run.ogGeyx’   ‘~/tmp/scratch/xvfb-run.qAP3u8’ ‘~/tmp/scratch/xvfb-run.rseVZ6’   ‘~/tmp/scratch/xvfb-run.uyDqI9’ ‘~/tmp/scratch/xvfb-run.vl00R5’   ‘~/tmp/scratch/xvfb-run.wO5hCQ’ ‘~/tmp/scratch/xvfb-run.zJULBN’
• DONE

Status: 1 NOTE