- using R Under development (unstable) (2026-01-26 r89334)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-12) 15.2.0
GNU Fortran (Debian 15.2.0-12) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘hockeystick/DESCRIPTION’ ... OK
- this is package ‘hockeystick’ version ‘0.8.6’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘hockeystick’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking whether startup messages can be suppressed ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/13s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [0s/1s] OK
Running ‘spelling.R’ [0s/0s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [24s/142s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘usinghockeystick.qmd’ using html
[31m
processing file: usinghockeystick.qmd
[39m [31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv'
[39m [31mContent type 'text/csv' length 38380 bytes (37 KB)
========== [39m [31m========== [39m [31m==============================
downloaded 37 KB
[39m [31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv'
[39m [31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m===== [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m== [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m
downloaded 13.7 MB
[39m [31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv'
[39m [31mContent type 'text/plain; charset=utf-8' [39m [31m length 14331624 bytes (13.7 MB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m===== [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m===== [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m== [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m
downloaded 13.7 MB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' length 12798 bytes (12 KB)
============================== [39m [31m====================
downloaded 12 KB
[39m [31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv'
[39m [31mContent type 'text/csv' length 38380 bytes (37 KB)
========== [39m [31m========== [39m [31m============================ [39m [31m==
downloaded 37 KB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' length 12798 bytes (12 KB)
============================== [39m [31m====================
downloaded 12 KB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' length 12798 bytes (12 KB)
============================== [39m [31m====================
downloaded 12 KB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' length 12798 bytes (12 KB)
============================== [39m [31m====================
downloaded 12 KB
[39m [31mtrying URL 'https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/slr/slr_sla_gbl_free_ref_90.csv'
[39m [31mContent type 'text/csv' length 38739 bytes (37 KB)
[39m [31m===================== [39m [31m=============================
downloaded 37 KB
[39m [31mtrying URL 'https://research.csiro.au/slrwavescoast/?ddownload=327'
[39m [31mdownloaded 379 KB
[39m [31mtrying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx'
[39m [31mContent type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 130244 bytes (127 KB)
=== [39m [31m=== [39m [31m=== [39m [31m=== [39m [31m=== [39m [31m=== [39m [31m=== [39m [31m==== [39m [31m====== [39m [31m=== [39m [31m========= [39m [31m=======
downloaded 127 KB
[39m [31mtrying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx'
[39m [31mContent type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 130244 bytes (127 KB)
=== [39m [31m=== [39m [31m====== [39m [31m=== [39m [31m=== [39m [31m=== [39m [31m============= [39m [31m====== [39m [31m=== [39m [31m=======
downloaded 127 KB
[39m [31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/ch4/ch4_mm_gl.txt'
[39m [31mContent type 'text/plain; charset=UTF-8' length 45309 bytes (44 KB)
======== [39m [31m========= [39m [31m========================== [39m [31m=======
downloaded 44 KB
[39m [31mtrying URL 'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/object/ess-dive-457358fdc81d3a5-20180726T203952542'
[39m [31mdownloaded 10 KB
[39m [31mtrying URL 'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/object/ess-dive-1e57f3f83864c10-20180717T104354142744'
[39m [31mError in `download.file()`:
! cannot open URL 'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/object/ess-dive-1e57f3f83864c10-20180717T104354142744'
Backtrace:
▆
1. └─hockeystick::get_paleo()
2. └─utils::download.file(file_url, dl)
[39m [31m
Quitting from usinghockeystick.qmd:109-114 [paleo]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [39m [31m~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/obj [39m [31mect/ess-dive-1e57f3f83864c10-20180717T104354142744'
---
Backtrace:
▆
1. └─hockeystick::get_paleo()
2. └─utils: [39m [31m:download.file(file_url, dl)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[39m [31mExecution halted
[39m [33mWARN: Error encountered when rendering files [39m
Error: processing vignette 'usinghockeystick.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: usinghockeystick.qmd
[31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' [39m
[31mContent type 'text/csv' length 38380 bytes (37 KB) [39m
========== [31m======================================== [39m
downloaded 37 KB
[31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' [39m
[31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) [39m
[31m================================================== [39m
downloaded 13.7 MB
[31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' [39m
[31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) [39m
[31m================================================== [39m
downloaded 13.7 MB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12798 bytes (12 KB) [39m
============================== [31m==================== [39m
downloaded 12 KB
[31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' [39m
[31mContent type 'text/csv' length 38380 bytes (37 KB) [39m
========== [31m======================================== [39m
downloaded 37 KB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12798 bytes (12 KB) [39m
============================== [31m==================== [39m
downloaded 12 KB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12798 bytes (12 KB) [39m
============================== [31m==================== [39m
downloaded 12 KB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12798 bytes (12 KB) [39m
============================== [31m==================== [39m
downloaded 12 KB
[31mtrying URL [39m
[31m'https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/slr/slr_sla_gbl_free_ref_90.csv' [39m
[31mContent type 'text/csv' length 38739 bytes (37 KB) [39m
[31m================================================== [39m
downloaded 37 KB
[31mtrying URL 'https://research.csiro.au/slrwavescoast/?ddownload=327' [39m
[31mdownloaded 379 KB [39m
[31mtrying URL [39m
[31m'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' [39m
[31mContent type [39m
[31m'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length [39m
[31m130244 bytes (127 KB) [39m
=== [31m=============================================== [39m
downloaded 127 KB
[31mtrying URL [39m
[31m'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' [39m
[31mContent type [39m
[31m'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length [39m
[31m130244 bytes (127 KB) [39m
=== [31m=============================================== [39m
downloaded 127 KB
[31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/ch4/ch4_mm_gl.txt' [39m
[31mContent type 'text/plain; charset=UTF-8' length 45309 bytes (44 KB) [39m
======== [31m========================================== [39m
downloaded 44 KB
[31mtrying URL [39m
[31m'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/object/ess-dive-457358fdc81d3a5-20180726T203952542' [39m
[31mdownloaded 10 KB [39m
[31mtrying URL [39m
[31m'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/object/ess-dive-1e57f3f83864c10-20180717T104354142744' [39m
[31mError in `download.file()`: [39m
! cannot open URL
'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/object/ess-dive-1e57f3f83864c10-20180717T104354142744'
Backtrace:
▆
1. └─hockeystick::get_paleo()
2. └─utils::download.file(file_url, dl)
Quitting from usinghockeystick.qmd:109-114 [paleo]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31m~~~~~~~~~~ [39m
<error/rlang_error>
Error in `download.file()`:
! cannot open URL
'https://data.ess-dive.lbl.gov/catalog/d1/mn/v2/obj [31mect/ess-dive-1e57f3f83864c10-20180717T104354142744' [39m
---
Backtrace:
▆
1. └─hockeystick::get_paleo()
2. └─utils: [31m:download.file(file_url, dl) [39m
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31mExecution halted [39m
[33mWARN: Error encountered when rendering files [39m
Caused by error:
! System command 'quarto' failed
--- failed re-building ‘usinghockeystick.qmd’
SUMMARY: processing the following file failed:
‘usinghockeystick.qmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/10s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR