* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘hmmTMB’ ...
** this is package ‘hmmTMB’ version ‘1.1.2’
** package ‘hmmTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/tmp/RtmpGd6CNs/R.INSTALL16f6695a4787ed/hmmTMB/src'
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript --vanilla -e "invisible(TMB::compile('hmmTMB.cpp', safebounds = FALSE, safeunload = FALSE))"
Note: Using Makevars in /home/hornik/.R/Makevars-gcc
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[2]: Entering directory '/tmp/RtmpGd6CNs/R.INSTALL16f6695a4787ed/hmmTMB/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_hmmTMB -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hmmTMB.cpp -o hmmTMB.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/ad_fun.hpp:602,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/cppad.hpp:86,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/TMB.hpp:125,
from hmmTMB.hpp:4,
from hmmTMB.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector<struct_old_variable>&, size_t, size_t, const Base*, const CppAD::vector<long unsigned int>&, short unsigned int&) [with Base = CppAD::AD<double>]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized]
782 | code = hash_code(
| ~~~~~~~~~^
783 | op ,
| ~~~~~~~~~~~~~~~~~~~~~
784 | new_arg ,
| ~~~~~~~~~~~~~~~~~~~~~
785 | npar ,
| ~~~~~~~~~~~~~~~~~~~~~
786 | par
| ~~~
787 | );
| ~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/recorder.hpp:14,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/ad.hpp:22,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/cppad.hpp:78:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = AD<double>]’ declared here
125 | unsigned short hash_code(
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here
715 | addr_t new_arg[2];
| ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector<struct_old_variable>&, size_t, size_t, const Base*, const CppAD::vector<long unsigned int>&, short unsigned int&) [with Base = double]’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized]
782 | code = hash_code(
| ~~~~~~~~~^
783 | op ,
| ~~~~~~~~~~~~~~~~~~~~~
784 | new_arg ,
| ~~~~~~~~~~~~~~~~~~~~~
785 | npar ,
| ~~~~~~~~~~~~~~~~~~~~~
786 | par
| ~~~
787 | );
| ~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = double]’ declared here
125 | unsigned short hash_code(
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here
715 | addr_t new_arg[2];
| ^~~~~~~
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o hmmTMB.so hmmTMB.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[2]: Leaving directory '/tmp/RtmpGd6CNs/R.INSTALL16f6695a4787ed/hmmTMB/src'
make[2]: Entering directory '/tmp/RtmpGd6CNs/R.INSTALL16f6695a4787ed/hmmTMB/src'
make[2]: Leaving directory '/tmp/RtmpGd6CNs/R.INSTALL16f6695a4787ed/hmmTMB/src'
make[1]: Leaving directory '/tmp/RtmpGd6CNs/R.INSTALL16f6695a4787ed/hmmTMB/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-hmmTMB/00new/hmmTMB/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hmmTMB)