• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:26:43 UTC
• checking for file ‘hmclearn/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘hmclearn’ version ‘0.0.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] NOTE Maintainer: ‘Samuel Thomas <samthoma@iu.edu>’ The Description field contains   Monte Carlo" <arXiv:1701.02434>, Thomas, S., Tu, W. (2020) "Learning   Hamiltonian Monte Carlo in R" <arXiv:2006.16194>, Gelman, A., Carlin, Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘hmclearn’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [22s/27s] OK Examples with CPU (user + system) or elapsed time > 5s            user system elapsed diagplots 3.854 0.076 5.061
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/20s] ERROR   Running ‘testthat.R’ [16s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(hmclearn)   >   > test_check("hmclearn")   Summary of MCMC simulation      Summary of MCMC simulation      Summary of MCMC simulation      Saving _problems/test_hmc-110.R   Summary of MCMC simulation      Summary of MCMC simulation      Summary of MCMC simulation      [ FAIL 1 | WARN 1 | SKIP 0 | PASS 21 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_hmc.R:110:3'): hmc testing ─────────────────────────────────────   <objectNotFoundError/error/condition>   Error in `eval(code, test_env)`: object 'PimaIndiansDiabetes' not found   Backtrace:       ▆    1. └─base::ifelse(PimaIndiansDiabetes$diabetes == "pos", 1, 0) at test_hmc.R:110:3      [ FAIL 1 | WARN 1 | SKIP 0 | PASS 21 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [7s/11s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Iqapb’ ‘~/tmp/scratch/Rtmp0eWjKj’   ‘~/tmp/scratch/Rtmp1UyDCa’ ‘~/tmp/scratch/Rtmp1WzAyn’   ‘~/tmp/scratch/Rtmp1qogYs’ ‘~/tmp/scratch/Rtmp314bub’   ‘~/tmp/scratch/Rtmp3BEAwk’ ‘~/tmp/scratch/Rtmp40X1yw’   ‘~/tmp/scratch/Rtmp4zvdND’ ‘~/tmp/scratch/Rtmp56sMR8’   ‘~/tmp/scratch/Rtmp5FRJji’ ‘~/tmp/scratch/Rtmp5mGuF3’   ‘~/tmp/scratch/Rtmp5nP1If’ ‘~/tmp/scratch/Rtmp6hkM8x’   ‘~/tmp/scratch/Rtmp7jRjzA’ ‘~/tmp/scratch/Rtmp7xymox’   ‘~/tmp/scratch/Rtmp809hRo’ ‘~/tmp/scratch/Rtmp8h4qkf’   ‘~/tmp/scratch/Rtmp96W39Q’ ‘~/tmp/scratch/Rtmp9A1lBe’   ‘~/tmp/scratch/Rtmp9ftxwg’ ‘~/tmp/scratch/Rtmp9iA9eV’   ‘~/tmp/scratch/RtmpA0UBwU’ ‘~/tmp/scratch/RtmpA2b0Qg’   ‘~/tmp/scratch/RtmpAIcGn3’ ‘~/tmp/scratch/RtmpAiRhJg’   ‘~/tmp/scratch/RtmpB9NLVP’ ‘~/tmp/scratch/RtmpCCNYH1’   ‘~/tmp/scratch/RtmpCkTO2R’ ‘~/tmp/scratch/RtmpD6Nefb’   ‘~/tmp/scratch/RtmpDOvwyX’ ‘~/tmp/scratch/RtmpDgzcMc’   ‘~/tmp/scratch/RtmpEDPxml’ ‘~/tmp/scratch/RtmpEcJ2F4’   ‘~/tmp/scratch/RtmpF87aNf’ ‘~/tmp/scratch/RtmpFA5dtR’   ‘~/tmp/scratch/RtmpFpNhuy’ ‘~/tmp/scratch/RtmpFwPdKk’   ‘~/tmp/scratch/RtmpGf55WA’ ‘~/tmp/scratch/RtmpGqKodj’   ‘~/tmp/scratch/RtmpH2zMv6’ ‘~/tmp/scratch/RtmpIqzMUL’   ‘~/tmp/scratch/RtmpItgYAf’ ‘~/tmp/scratch/RtmpJZjS3T’   ‘~/tmp/scratch/RtmpK30gBx’ ‘~/tmp/scratch/RtmpLIf0k4’   ‘~/tmp/scratch/RtmpLSlcpE’ ‘~/tmp/scratch/RtmpLkeW8M’   ‘~/tmp/scratch/RtmpMaKBdz’ ‘~/tmp/scratch/RtmpMcnPU0’   ‘~/tmp/scratch/RtmpMm7tUJ’ ‘~/tmp/scratch/RtmpMuHmNG’   ‘~/tmp/scratch/RtmpMwMSI3’ ‘~/tmp/scratch/RtmpOFVyvT’   ‘~/tmp/scratch/RtmpOQfc2D’ ‘~/tmp/scratch/RtmpORDprN’   ‘~/tmp/scratch/RtmpOZFj9f’ ‘~/tmp/scratch/RtmpRKIktW’   ‘~/tmp/scratch/RtmpSCoEDz’ ‘~/tmp/scratch/RtmpSDvtB9’   ‘~/tmp/scratch/RtmpSzM12L’ ‘~/tmp/scratch/RtmpU0Bzmi’   ‘~/tmp/scratch/RtmpUvaWzz’ ‘~/tmp/scratch/RtmpVUfVbo’   ‘~/tmp/scratch/RtmpVhmGlM’ ‘~/tmp/scratch/RtmpVicslT’   ‘~/tmp/scratch/RtmpWh60N9’ ‘~/tmp/scratch/RtmpYAV2D6’   ‘~/tmp/scratch/RtmpZCyAWZ’ ‘~/tmp/scratch/RtmpZf4E29’   ‘~/tmp/scratch/RtmpZoSoIy’ ‘~/tmp/scratch/RtmpaV1onO’   ‘~/tmp/scratch/Rtmpb5Krx3’ ‘~/tmp/scratch/RtmpbFbeWm’   ‘~/tmp/scratch/RtmpblUsrq’ ‘~/tmp/scratch/Rtmpblr5zc’   ‘~/tmp/scratch/RtmpburiJn’ ‘~/tmp/scratch/RtmpcCPVDP’   ‘~/tmp/scratch/RtmpcHNbFY’ ‘~/tmp/scratch/RtmpcQuMIs’   ‘~/tmp/scratch/RtmpcbXAeB’ ‘~/tmp/scratch/RtmpcfINMz’   ‘~/tmp/scratch/RtmpchMwPl’ ‘~/tmp/scratch/RtmpdB5io3’   ‘~/tmp/scratch/RtmpdojOfv’ ‘~/tmp/scratch/Rtmpe0hMto’   ‘~/tmp/scratch/RtmpeOOEH4’ ‘~/tmp/scratch/RtmpfNUsuv’   ‘~/tmp/scratch/Rtmpg9KeVx’ ‘~/tmp/scratch/RtmpgwRv5y’   ‘~/tmp/scratch/RtmphOFqie’ ‘~/tmp/scratch/RtmphOvOex’   ‘~/tmp/scratch/RtmpiV3l6v’ ‘~/tmp/scratch/RtmpiX1E4K’   ‘~/tmp/scratch/RtmpiiveS8’ ‘~/tmp/scratch/RtmpiqUopv’   ‘~/tmp/scratch/RtmpjdmVie’ ‘~/tmp/scratch/Rtmpl1Px59’   ‘~/tmp/scratch/RtmplW7IRi’ ‘~/tmp/scratch/RtmplilGWF’   ‘~/tmp/scratch/RtmplmP0Eb’ ‘~/tmp/scratch/Rtmpm4aINA’   ‘~/tmp/scratch/Rtmpm4bS8u’ ‘~/tmp/scratch/Rtmpm5lQii’   ‘~/tmp/scratch/Rtmpmjy4B3’ ‘~/tmp/scratch/Rtmpn48H7Y’   ‘~/tmp/scratch/Rtmpn9ijes’ ‘~/tmp/scratch/RtmpnK5KtY’   ‘~/tmp/scratch/RtmpnMjCk5’ ‘~/tmp/scratch/Rtmpo59Lgw’   ‘~/tmp/scratch/RtmpoSvpVl’ ‘~/tmp/scratch/RtmpoaUls7’   ‘~/tmp/scratch/Rtmppupxyr’ ‘~/tmp/scratch/Rtmpr1cwFM’   ‘~/tmp/scratch/Rtmpr3FOaP’ ‘~/tmp/scratch/Rtmpr5yFss’   ‘~/tmp/scratch/Rtmpreipff’ ‘~/tmp/scratch/RtmpsRSLsY’   ‘~/tmp/scratch/RtmpsZdTD5’ ‘~/tmp/scratch/Rtmpt5n6kO’   ‘~/tmp/scratch/RtmptdOYrR’ ‘~/tmp/scratch/RtmptkcQ9w’   ‘~/tmp/scratch/RtmptzrsHU’ ‘~/tmp/scratch/RtmpunivQ8’   ‘~/tmp/scratch/Rtmpv4ezB3’ ‘~/tmp/scratch/RtmpvooBSA’   ‘~/tmp/scratch/RtmpwZ41Ec’ ‘~/tmp/scratch/RtmpxfiWeK’   ‘~/tmp/scratch/RtmpxmDt9L’ ‘~/tmp/scratch/RtmpyfPyJZ’   ‘~/tmp/scratch/Rtmpyfzhlj’ ‘~/tmp/scratch/RtmpzmOUpU’   ‘~/tmp/scratch/xvfb-run.2ddq6x’ ‘~/tmp/scratch/xvfb-run.4dKL1X’   ‘~/tmp/scratch/xvfb-run.6SCIvo’ ‘~/tmp/scratch/xvfb-run.6VdEej’   ‘~/tmp/scratch/xvfb-run.6s2Rvm’ ‘~/tmp/scratch/xvfb-run.7sbert’   ‘~/tmp/scratch/xvfb-run.C9vXcK’ ‘~/tmp/scratch/xvfb-run.DTWdtG’   ‘~/tmp/scratch/xvfb-run.EGDu4X’ ‘~/tmp/scratch/xvfb-run.EQvecP’   ‘~/tmp/scratch/xvfb-run.FXAQMr’ ‘~/tmp/scratch/xvfb-run.GU0Q1I’   ‘~/tmp/scratch/xvfb-run.GwrQaJ’ ‘~/tmp/scratch/xvfb-run.HwKBQO’   ‘~/tmp/scratch/xvfb-run.IKFite’ ‘~/tmp/scratch/xvfb-run.Io5XOs’   ‘~/tmp/scratch/xvfb-run.JVGaJm’ ‘~/tmp/scratch/xvfb-run.JeqhBc’   ‘~/tmp/scratch/xvfb-run.JgIHA3’ ‘~/tmp/scratch/xvfb-run.Lo7M9c’   ‘~/tmp/scratch/xvfb-run.NfVRKq’ ‘~/tmp/scratch/xvfb-run.RtvLHj’   ‘~/tmp/scratch/xvfb-run.S9q2Ss’ ‘~/tmp/scratch/xvfb-run.SWMEr2’   ‘~/tmp/scratch/xvfb-run.WTE8OB’ ‘~/tmp/scratch/xvfb-run.YASXMK’   ‘~/tmp/scratch/xvfb-run.YEbtC0’ ‘~/tmp/scratch/xvfb-run.ZgwPjh’   ‘~/tmp/scratch/xvfb-run.anoHip’ ‘~/tmp/scratch/xvfb-run.atLld6’   ‘~/tmp/scratch/xvfb-run.ay7gn5’ ‘~/tmp/scratch/xvfb-run.b22gmI’   ‘~/tmp/scratch/xvfb-run.bM7Meg’ ‘~/tmp/scratch/xvfb-run.bcONyW’   ‘~/tmp/scratch/xvfb-run.dNTfvU’ ‘~/tmp/scratch/xvfb-run.deLArq’   ‘~/tmp/scratch/xvfb-run.doT4D3’ ‘~/tmp/scratch/xvfb-run.gBtVJl’   ‘~/tmp/scratch/xvfb-run.gf89qj’ ‘~/tmp/scratch/xvfb-run.lPaKwN’   ‘~/tmp/scratch/xvfb-run.n0GwUq’ ‘~/tmp/scratch/xvfb-run.oARpVu’   ‘~/tmp/scratch/xvfb-run.ogGeyx’ ‘~/tmp/scratch/xvfb-run.pl5utO’   ‘~/tmp/scratch/xvfb-run.qAP3u8’ ‘~/tmp/scratch/xvfb-run.rTgB2j’   ‘~/tmp/scratch/xvfb-run.rseVZ6’ ‘~/tmp/scratch/xvfb-run.sPVu3A’   ‘~/tmp/scratch/xvfb-run.tD2Sk7’ ‘~/tmp/scratch/xvfb-run.uGbG8k’   ‘~/tmp/scratch/xvfb-run.uZgpg5’ ‘~/tmp/scratch/xvfb-run.uyDqI9’   ‘~/tmp/scratch/xvfb-run.vl00R5’ ‘~/tmp/scratch/xvfb-run.w5LcU4’   ‘~/tmp/scratch/xvfb-run.wO5hCQ’ ‘~/tmp/scratch/xvfb-run.zJULBN’
• DONE

Status: 1 ERROR, 2 NOTEs