• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 15:22:08 UTC
• checking for file ‘hdpGLM/DESCRIPTION’ ... OK
• this is package ‘hdpGLM’ version ‘1.0.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘hdpGLM’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/19s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [24s/32s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed plot_hdpglm 7.133 0.210 9.959 plot_pexp_beta 5.766 0.097 8.406 hdpGLM 4.130 0.305 5.415
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [101s/97s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0E6Qkv’ ‘~/tmp/scratch/Rtmp0KT6nQ’   ‘~/tmp/scratch/Rtmp1NJhft’ ‘~/tmp/scratch/Rtmp1aAOLV’   ‘~/tmp/scratch/Rtmp2CHK5B’ ‘~/tmp/scratch/Rtmp2Z27q8’   ‘~/tmp/scratch/Rtmp2i7yil’ ‘~/tmp/scratch/Rtmp4XtxrL’   ‘~/tmp/scratch/Rtmp4d9ROt’ ‘~/tmp/scratch/Rtmp4igjTY’   ‘~/tmp/scratch/Rtmp4sWV4d’ ‘~/tmp/scratch/Rtmp56rarP’   ‘~/tmp/scratch/Rtmp5BsHFy’ ‘~/tmp/scratch/Rtmp5ZHFaR’   ‘~/tmp/scratch/Rtmp5wzjb7’ ‘~/tmp/scratch/Rtmp5zJdSE’   ‘~/tmp/scratch/Rtmp60oTQO’ ‘~/tmp/scratch/Rtmp62YCAH’   ‘~/tmp/scratch/Rtmp6bBQCI’ ‘~/tmp/scratch/Rtmp74UspQ’   ‘~/tmp/scratch/Rtmp75ppnS’ ‘~/tmp/scratch/Rtmp77VaCn’   ‘~/tmp/scratch/Rtmp7VzBPf’ ‘~/tmp/scratch/Rtmp7pCeAk’   ‘~/tmp/scratch/Rtmp8QhbvW’ ‘~/tmp/scratch/Rtmp9YP85M’   ‘~/tmp/scratch/Rtmp9rGrMP’ ‘~/tmp/scratch/Rtmp9svrbQ’   ‘~/tmp/scratch/RtmpABXwgg’ ‘~/tmp/scratch/RtmpAHBjLL’   ‘~/tmp/scratch/RtmpAWYvJs’ ‘~/tmp/scratch/RtmpAX94pV’   ‘~/tmp/scratch/RtmpB1vNO3’ ‘~/tmp/scratch/RtmpB7SwKl’   ‘~/tmp/scratch/RtmpCKbMvt’ ‘~/tmp/scratch/RtmpCNjoi2’   ‘~/tmp/scratch/RtmpCTLgwk’ ‘~/tmp/scratch/RtmpEG77La’   ‘~/tmp/scratch/RtmpENVVdj’ ‘~/tmp/scratch/RtmpEOc6ls’   ‘~/tmp/scratch/RtmpExK6w9’ ‘~/tmp/scratch/RtmpFNw74d’   ‘~/tmp/scratch/RtmpFQv5z4’ ‘~/tmp/scratch/RtmpFpHphi’   ‘~/tmp/scratch/RtmpG9jYDJ’ ‘~/tmp/scratch/RtmpGbifyZ’   ‘~/tmp/scratch/RtmpGgQUYm’ ‘~/tmp/scratch/RtmpGiZDTQ’   ‘~/tmp/scratch/RtmpH3fSEH’ ‘~/tmp/scratch/RtmpH6SjLr’   ‘~/tmp/scratch/RtmpHCdLh2’ ‘~/tmp/scratch/RtmpHbAfIR’   ‘~/tmp/scratch/RtmpHdEBOb’ ‘~/tmp/scratch/RtmpILe9He’   ‘~/tmp/scratch/RtmpIi6KRP’ ‘~/tmp/scratch/RtmpIzLXMB’   ‘~/tmp/scratch/RtmpJO5YNP’ ‘~/tmp/scratch/RtmpK6yGrR’   ‘~/tmp/scratch/RtmpKBsSfK’ ‘~/tmp/scratch/RtmpKg25VU’   ‘~/tmp/scratch/RtmpLEej7P’ ‘~/tmp/scratch/RtmpLXxIRq’   ‘~/tmp/scratch/RtmpMJeggX’ ‘~/tmp/scratch/RtmpMVT96D’   ‘~/tmp/scratch/RtmpMuVQxu’ ‘~/tmp/scratch/RtmpMulWjq’   ‘~/tmp/scratch/RtmpN5PnWd’ ‘~/tmp/scratch/RtmpNFdQRA’   ‘~/tmp/scratch/RtmpNtYLpH’ ‘~/tmp/scratch/RtmpO5U7Oc’   ‘~/tmp/scratch/RtmpO6fsJz’ ‘~/tmp/scratch/RtmpOhURcF’   ‘~/tmp/scratch/RtmpOx1Sp5’ ‘~/tmp/scratch/RtmpP0rIV7’   ‘~/tmp/scratch/RtmpPdYh5i’ ‘~/tmp/scratch/RtmpPnc1Z7’   ‘~/tmp/scratch/RtmpPr1VpP’ ‘~/tmp/scratch/RtmpPtSLit’   ‘~/tmp/scratch/RtmpQxslcr’ ‘~/tmp/scratch/RtmpRYJ4C5’   ‘~/tmp/scratch/RtmpS5MFWY’ ‘~/tmp/scratch/RtmpTcar7P’   ‘~/tmp/scratch/RtmpUTPLf5’ ‘~/tmp/scratch/RtmpUU9ZCy’   ‘~/tmp/scratch/RtmpV4l0LB’ ‘~/tmp/scratch/RtmpVK4YRo’   ‘~/tmp/scratch/RtmpVPlkhK’ ‘~/tmp/scratch/RtmpVdGIlu’   ‘~/tmp/scratch/RtmpWqq0Sm’ ‘~/tmp/scratch/RtmpXUNISH’   ‘~/tmp/scratch/RtmpXXV6Re’ ‘~/tmp/scratch/RtmpXbjRsy’   ‘~/tmp/scratch/RtmpZHDggg’ ‘~/tmp/scratch/RtmpZWlZEd’   ‘~/tmp/scratch/RtmpZquZjz’ ‘~/tmp/scratch/RtmpZt4EyD’   ‘~/tmp/scratch/Rtmpa9kC03’ ‘~/tmp/scratch/RtmpafQfu8’   ‘~/tmp/scratch/Rtmpak5sRa’ ‘~/tmp/scratch/RtmpbL8sNO’   ‘~/tmp/scratch/RtmpbY9B3B’ ‘~/tmp/scratch/Rtmpbb4yEf’   ‘~/tmp/scratch/RtmpbpfGgZ’ ‘~/tmp/scratch/Rtmpc08apN’   ‘~/tmp/scratch/Rtmpc4a8ai’ ‘~/tmp/scratch/RtmpcCMBv5’   ‘~/tmp/scratch/RtmpctW9Yb’ ‘~/tmp/scratch/RtmpdIsIbm’   ‘~/tmp/scratch/RtmpeYzkzk’ ‘~/tmp/scratch/RtmpfM4IiK’   ‘~/tmp/scratch/RtmpfNBsQf’ ‘~/tmp/scratch/RtmpfUXF2Z’   ‘~/tmp/scratch/Rtmpfb6PH3’ ‘~/tmp/scratch/RtmpfzsJCU’   ‘~/tmp/scratch/RtmphFX0zc’ ‘~/tmp/scratch/RtmphKCCnj’   ‘~/tmp/scratch/RtmphPsMmZ’ ‘~/tmp/scratch/RtmphafQ1b’   ‘~/tmp/scratch/RtmphtCvIZ’ ‘~/tmp/scratch/RtmphwQ31J’   ‘~/tmp/scratch/RtmpiFQycr’ ‘~/tmp/scratch/RtmpjEb1uS’   ‘~/tmp/scratch/RtmpjNlYFn’ ‘~/tmp/scratch/RtmpjlB4Yi’   ‘~/tmp/scratch/Rtmpk22aUU’ ‘~/tmp/scratch/RtmpkOhWuq’   ‘~/tmp/scratch/RtmpkYiVsC’ ‘~/tmp/scratch/RtmpkmbfPd’   ‘~/tmp/scratch/RtmplGz9Bp’ ‘~/tmp/scratch/RtmplHJzjH’   ‘~/tmp/scratch/RtmpmjJjDb’ ‘~/tmp/scratch/Rtmpn09R17’   ‘~/tmp/scratch/RtmpnHNaP8’ ‘~/tmp/scratch/RtmpnTVhAd’   ‘~/tmp/scratch/RtmpnxGMNT’ ‘~/tmp/scratch/RtmpoCgzTi’   ‘~/tmp/scratch/RtmpoaoYn9’ ‘~/tmp/scratch/Rtmpot09DH’   ‘~/tmp/scratch/RtmppcdyOc’ ‘~/tmp/scratch/RtmprE07lx’   ‘~/tmp/scratch/RtmprQpkhU’ ‘~/tmp/scratch/RtmprYCs1c’   ‘~/tmp/scratch/Rtmprc85PQ’ ‘~/tmp/scratch/RtmpsK9qhf’   ‘~/tmp/scratch/RtmpsfTgos’ ‘~/tmp/scratch/RtmpsqOQQ0’   ‘~/tmp/scratch/RtmptGVD9t’ ‘~/tmp/scratch/RtmpttwBnP’   ‘~/tmp/scratch/Rtmpu00Ksd’ ‘~/tmp/scratch/Rtmpu5mN8b’   ‘~/tmp/scratch/RtmpuJzOmk’ ‘~/tmp/scratch/RtmpuPryV8’   ‘~/tmp/scratch/RtmpvBF8pv’ ‘~/tmp/scratch/RtmpvHYPwK’   ‘~/tmp/scratch/RtmpvXruIQ’ ‘~/tmp/scratch/RtmpvljL4g’   ‘~/tmp/scratch/RtmpwQLLEu’ ‘~/tmp/scratch/RtmpwX7ctO’   ‘~/tmp/scratch/Rtmpwb8nJV’ ‘~/tmp/scratch/Rtmpwhaww2’   ‘~/tmp/scratch/Rtmpwos0KS’ ‘~/tmp/scratch/Rtmpwuw1Iq’   ‘~/tmp/scratch/RtmpxDQAft’ ‘~/tmp/scratch/Rtmpxje5FF’   ‘~/tmp/scratch/RtmpxmY80h’ ‘~/tmp/scratch/RtmpxyJEKU’   ‘~/tmp/scratch/Rtmpz48Pfx’ ‘~/tmp/scratch/RtmpzQI5Vn’   ‘~/tmp/scratch/ccTXiIoR.s’ ‘~/tmp/scratch/xvfb-run.0ExCji’   ‘~/tmp/scratch/xvfb-run.1RqDjy’ ‘~/tmp/scratch/xvfb-run.1ddu3k’   ‘~/tmp/scratch/xvfb-run.357JBZ’ ‘~/tmp/scratch/xvfb-run.3GKmxe’   ‘~/tmp/scratch/xvfb-run.4XEpe0’ ‘~/tmp/scratch/xvfb-run.6C4qaR’   ‘~/tmp/scratch/xvfb-run.6wfvHX’ ‘~/tmp/scratch/xvfb-run.740G7q’   ‘~/tmp/scratch/xvfb-run.8jAhxM’ ‘~/tmp/scratch/xvfb-run.8tXZiu’   ‘~/tmp/scratch/xvfb-run.9HkguK’ ‘~/tmp/scratch/xvfb-run.AF281M’   ‘~/tmp/scratch/xvfb-run.AKMEBh’ ‘~/tmp/scratch/xvfb-run.BqNdhx’   ‘~/tmp/scratch/xvfb-run.Bw6XGx’ ‘~/tmp/scratch/xvfb-run.CP5Sl0’   ‘~/tmp/scratch/xvfb-run.CgE0uE’ ‘~/tmp/scratch/xvfb-run.FgLE6F’   ‘~/tmp/scratch/xvfb-run.FhiGb6’ ‘~/tmp/scratch/xvfb-run.G7pjGw’   ‘~/tmp/scratch/xvfb-run.GVm0Gz’ ‘~/tmp/scratch/xvfb-run.HNx5gX’   ‘~/tmp/scratch/xvfb-run.HqK6hu’ ‘~/tmp/scratch/xvfb-run.IX6sSS’   ‘~/tmp/scratch/xvfb-run.InXTJh’ ‘~/tmp/scratch/xvfb-run.JifB7B’   ‘~/tmp/scratch/xvfb-run.K5yI51’ ‘~/tmp/scratch/xvfb-run.LdHKe1’   ‘~/tmp/scratch/xvfb-run.LiShdZ’ ‘~/tmp/scratch/xvfb-run.LxWmWl’   ‘~/tmp/scratch/xvfb-run.NIEU1i’ ‘~/tmp/scratch/xvfb-run.NIfNJj’   ‘~/tmp/scratch/xvfb-run.O24tmT’ ‘~/tmp/scratch/xvfb-run.PDmSRo’   ‘~/tmp/scratch/xvfb-run.Qql8cS’ ‘~/tmp/scratch/xvfb-run.Rc6s96’   ‘~/tmp/scratch/xvfb-run.SXFRl7’ ‘~/tmp/scratch/xvfb-run.TMOGtO’   ‘~/tmp/scratch/xvfb-run.TYLyTq’ ‘~/tmp/scratch/xvfb-run.TfaetA’   ‘~/tmp/scratch/xvfb-run.UQOgzC’ ‘~/tmp/scratch/xvfb-run.Uqzpoa’   ‘~/tmp/scratch/xvfb-run.V8bOGR’ ‘~/tmp/scratch/xvfb-run.Wi2arP’   ‘~/tmp/scratch/xvfb-run.bCl4rR’ ‘~/tmp/scratch/xvfb-run.bfW73R’   ‘~/tmp/scratch/xvfb-run.c4mOTw’ ‘~/tmp/scratch/xvfb-run.dUvoAE’   ‘~/tmp/scratch/xvfb-run.dtALWB’ ‘~/tmp/scratch/xvfb-run.dtelax’   ‘~/tmp/scratch/xvfb-run.e1Swi2’ ‘~/tmp/scratch/xvfb-run.fpYYzW’   ‘~/tmp/scratch/xvfb-run.fpbh6M’ ‘~/tmp/scratch/xvfb-run.hNVYLE’   ‘~/tmp/scratch/xvfb-run.krU7fr’ ‘~/tmp/scratch/xvfb-run.lEkcRv’   ‘~/tmp/scratch/xvfb-run.m5dEHW’ ‘~/tmp/scratch/xvfb-run.miOLhK’   ‘~/tmp/scratch/xvfb-run.nI3IMB’ ‘~/tmp/scratch/xvfb-run.pWgVma’   ‘~/tmp/scratch/xvfb-run.qJsYKk’ ‘~/tmp/scratch/xvfb-run.qkTj19’   ‘~/tmp/scratch/xvfb-run.rCJ80S’ ‘~/tmp/scratch/xvfb-run.t8NkO1’   ‘~/tmp/scratch/xvfb-run.tpz6ha’ ‘~/tmp/scratch/xvfb-run.twhmKF’   ‘~/tmp/scratch/xvfb-run.u4fP83’ ‘~/tmp/scratch/xvfb-run.ucczs5’   ‘~/tmp/scratch/xvfb-run.unQUWl’ ‘~/tmp/scratch/xvfb-run.usb17w’   ‘~/tmp/scratch/xvfb-run.x7ZVeF’ ‘~/tmp/scratch/xvfb-run.xjefkt’   ‘~/tmp/scratch/xvfb-run.xjwozz’ ‘~/tmp/scratch/xvfb-run.zoeCEu’   ‘/dev/shm/sm_segment.gimli1.1001.540e0000.0’   ‘~/.cache/pocl/uncached/tempfile_uv7ZT3’
• DONE

Status: 1 NOTE