• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 15:20:59 UTC
• checking for file ‘haplotyper/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘haplotyper’ version ‘0.1’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Sebastian",                       family = "Simondi",                       role = "aut",                       email = "sebastian.simondi@gmail.com"),                person(given = "Gaston",                       family = "Quero",                       role = c("aut", "cre"),                       email = "gastonquero@gmail.com"),                person(given = c("with", "contributions", "from", "Victoria"),                       family = "Bonnecarrere",                       role = "aut"),                person(given = "Lucia",                       family = "Gutierrez",                       role = "aut")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘haplotyper’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/0s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [14s/15s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0ZBDSr’ ‘~/tmp/scratch/Rtmp1D45QZ’   ‘~/tmp/scratch/Rtmp1yMK43’ ‘~/tmp/scratch/Rtmp2HLGAs’   ‘~/tmp/scratch/Rtmp2QyDZc’ ‘~/tmp/scratch/Rtmp37eYhq’   ‘~/tmp/scratch/Rtmp3Wte0Z’ ‘~/tmp/scratch/Rtmp4BtUIE’   ‘~/tmp/scratch/Rtmp4ewr4j’ ‘~/tmp/scratch/Rtmp50NrzF’   ‘~/tmp/scratch/Rtmp5AsYhe’ ‘~/tmp/scratch/Rtmp5tORH7’   ‘~/tmp/scratch/Rtmp6tkYDL’ ‘~/tmp/scratch/Rtmp8FeOpC’   ‘~/tmp/scratch/Rtmp94Sxlg’ ‘~/tmp/scratch/RtmpBLrUOo’   ‘~/tmp/scratch/RtmpBqkrS1’ ‘~/tmp/scratch/RtmpCW2ppb’   ‘~/tmp/scratch/RtmpCdODFM’ ‘~/tmp/scratch/RtmpD6x2tM’   ‘~/tmp/scratch/RtmpEiLvpX’ ‘~/tmp/scratch/RtmpHRZOlK’   ‘~/tmp/scratch/RtmpI0pkHp’ ‘~/tmp/scratch/RtmpIYzL9j’   ‘~/tmp/scratch/RtmpJ4jY9s’ ‘~/tmp/scratch/RtmpJlXubE’   ‘~/tmp/scratch/RtmpJywnca’ ‘~/tmp/scratch/RtmpK93jCm’   ‘~/tmp/scratch/RtmpKCSSdS’ ‘~/tmp/scratch/RtmpKEjmwr’   ‘~/tmp/scratch/RtmpKFeZfi’ ‘~/tmp/scratch/RtmpKMv4g5’   ‘~/tmp/scratch/RtmpKs4aXb’ ‘~/tmp/scratch/RtmpKthNub’   ‘~/tmp/scratch/RtmpL8wWUH’ ‘~/tmp/scratch/RtmpLwouN6’   ‘~/tmp/scratch/RtmpMOr829’ ‘~/tmp/scratch/RtmpMQ9oKi’   ‘~/tmp/scratch/RtmpMXjYIs’ ‘~/tmp/scratch/RtmpNE5fs1’   ‘~/tmp/scratch/RtmpNI60Ux’ ‘~/tmp/scratch/RtmpNPMqWk’   ‘~/tmp/scratch/RtmpOYicCN’ ‘~/tmp/scratch/RtmpOks6Zz’   ‘~/tmp/scratch/RtmpOnT928’ ‘~/tmp/scratch/RtmpPF8Iie’   ‘~/tmp/scratch/RtmpRtm8Yo’ ‘~/tmp/scratch/RtmpSOAt4J’   ‘~/tmp/scratch/RtmpTDksrn’ ‘~/tmp/scratch/RtmpTSHFnX’   ‘~/tmp/scratch/RtmpTkAa7P’ ‘~/tmp/scratch/RtmpUV7LTp’   ‘~/tmp/scratch/RtmpUXOk0W’ ‘~/tmp/scratch/RtmpVeDqvJ’   ‘~/tmp/scratch/RtmpViNcc2’ ‘~/tmp/scratch/RtmpVk1vr3’   ‘~/tmp/scratch/RtmpVtyG22’ ‘~/tmp/scratch/RtmpWWWEdM’   ‘~/tmp/scratch/RtmpWeVPvD’ ‘~/tmp/scratch/RtmpWn0r8Y’   ‘~/tmp/scratch/RtmpWoX8kA’ ‘~/tmp/scratch/RtmpYc0MVl’   ‘~/tmp/scratch/RtmpZVhali’ ‘~/tmp/scratch/RtmpZaogJF’   ‘~/tmp/scratch/Rtmpab1eWn’ ‘~/tmp/scratch/RtmpauDfez’   ‘~/tmp/scratch/Rtmpawa1lT’ ‘~/tmp/scratch/Rtmpbobk5B’   ‘~/tmp/scratch/Rtmpc7QXmr’ ‘~/tmp/scratch/Rtmpcc73gw’   ‘~/tmp/scratch/RtmpcrMlwX’ ‘~/tmp/scratch/RtmpdVleGF’   ‘~/tmp/scratch/Rtmpdtzqj2’ ‘~/tmp/scratch/RtmpfbGKfh’   ‘~/tmp/scratch/RtmpfzsQmJ’ ‘~/tmp/scratch/Rtmpi1V7J9’   ‘~/tmp/scratch/Rtmpi3kvdp’ ‘~/tmp/scratch/Rtmpi3qyb2’   ‘~/tmp/scratch/RtmpiIcwYJ’ ‘~/tmp/scratch/RtmpiUoXJM’   ‘~/tmp/scratch/RtmpisnxbW’ ‘~/tmp/scratch/RtmpkC7mEw’   ‘~/tmp/scratch/RtmplGADzZ’ ‘~/tmp/scratch/RtmpmTiYxl’   ‘~/tmp/scratch/Rtmpmp1WCK’ ‘~/tmp/scratch/Rtmpmspg8R’   ‘~/tmp/scratch/RtmpnD8UUZ’ ‘~/tmp/scratch/RtmpnXd0XS’   ‘~/tmp/scratch/RtmpnZ7ji9’ ‘~/tmp/scratch/RtmpneBB2L’   ‘~/tmp/scratch/RtmpoIBn78’ ‘~/tmp/scratch/RtmpoxZAGm’   ‘~/tmp/scratch/RtmppiS8op’ ‘~/tmp/scratch/RtmpptpGMX’   ‘~/tmp/scratch/Rtmpq07rgW’ ‘~/tmp/scratch/RtmprobhTX’   ‘~/tmp/scratch/Rtmpryvvue’ ‘~/tmp/scratch/RtmpsLoC7m’   ‘~/tmp/scratch/RtmptGZ1GX’ ‘~/tmp/scratch/Rtmpv9r5Is’   ‘~/tmp/scratch/Rtmpvk1rGb’ ‘~/tmp/scratch/RtmpvmhjSW’   ‘~/tmp/scratch/RtmpvzqTbw’ ‘~/tmp/scratch/Rtmpw24OtR’   ‘~/tmp/scratch/Rtmpw8ta8m’ ‘~/tmp/scratch/RtmpwIo7QQ’   ‘~/tmp/scratch/RtmpwVUR0s’ ‘~/tmp/scratch/RtmpwXyful’   ‘~/tmp/scratch/RtmpxYt6bk’ ‘~/tmp/scratch/RtmpykxNJo’   ‘~/tmp/scratch/RtmpyyLDI1’ ‘~/tmp/scratch/RtmpzHKFEr’   ‘~/tmp/scratch/xvfb-run.2WimGE’ ‘~/tmp/scratch/xvfb-run.2kGg9e’   ‘~/tmp/scratch/xvfb-run.35N2iJ’ ‘~/tmp/scratch/xvfb-run.5Lvcx6’   ‘~/tmp/scratch/xvfb-run.6kAN68’ ‘~/tmp/scratch/xvfb-run.9qq0oR’   ‘~/tmp/scratch/xvfb-run.Bq32sk’ ‘~/tmp/scratch/xvfb-run.CMV8yO’   ‘~/tmp/scratch/xvfb-run.DBTIze’ ‘~/tmp/scratch/xvfb-run.DUgekf’   ‘~/tmp/scratch/xvfb-run.GlZ1pu’ ‘~/tmp/scratch/xvfb-run.HJfF7z’   ‘~/tmp/scratch/xvfb-run.JPHelX’ ‘~/tmp/scratch/xvfb-run.LhJvZD’   ‘~/tmp/scratch/xvfb-run.MFA6g3’ ‘~/tmp/scratch/xvfb-run.NYCDye’   ‘~/tmp/scratch/xvfb-run.P6VOhx’ ‘~/tmp/scratch/xvfb-run.RCOogv’   ‘~/tmp/scratch/xvfb-run.X2da94’ ‘~/tmp/scratch/xvfb-run.YU6Ctm’   ‘~/tmp/scratch/xvfb-run.Z1flRv’ ‘~/tmp/scratch/xvfb-run.Z3WZvx’   ‘~/tmp/scratch/xvfb-run.ZBto7N’ ‘~/tmp/scratch/xvfb-run.bX94xb’   ‘~/tmp/scratch/xvfb-run.cermPs’ ‘~/tmp/scratch/xvfb-run.g7mPdj’   ‘~/tmp/scratch/xvfb-run.gthSld’ ‘~/tmp/scratch/xvfb-run.iLNN0L’   ‘~/tmp/scratch/xvfb-run.mXPCn6’ ‘~/tmp/scratch/xvfb-run.mdOpuk’   ‘~/tmp/scratch/xvfb-run.olNZVB’ ‘~/tmp/scratch/xvfb-run.pU16Y9’   ‘~/tmp/scratch/xvfb-run.qJzEhO’ ‘~/tmp/scratch/xvfb-run.sBqFgc’   ‘~/tmp/scratch/xvfb-run.sVcw4I’ ‘~/tmp/scratch/xvfb-run.t1xgPw’   ‘~/tmp/scratch/xvfb-run.uUjlAB’ ‘~/tmp/scratch/xvfb-run.xFQd5v’
• DONE

Status: 2 NOTEs