* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘haplo.stats’ ...
** this is package ‘haplo.stats’ version ‘1.9.8.7’
** package ‘haplo.stats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/tmp/RtmpoGmxdV/R.INSTALL27b503050722/haplo.stats/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c groupsum.c -o groupsum.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c haplo.stats_init.c -o haplo.stats_init.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c haplo_em_pin.c -o haplo_em_pin.o
haplo_em_pin.c: In function ‘haplo_em_pin’:
haplo_em_pin.c:270:27: warning: ‘lnlike_old’ may be used uninitialized [-Wmaybe-uninitialized]
  270 |           if (fabs(lnlike - lnlike_old) < *tol){
      |                    ~~~~~~~^~~~~~~~~~~~
haplo_em_pin.c:97:18: note: ‘lnlike_old’ was declared here
   97 |   double lnlike, lnlike_old;
      |                  ^~~~~~~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c louis_info.c -o louis_info.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c seqhap.c -o seqhap.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o haplo.stats.so groupsum.o haplo.stats_init.o haplo_em_pin.o louis_info.o seqhap.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpoGmxdV/R.INSTALL27b503050722/haplo.stats/src'
make[1]: Entering directory '/tmp/RtmpoGmxdV/R.INSTALL27b503050722/haplo.stats/src'
make[1]: Leaving directory '/tmp/RtmpoGmxdV/R.INSTALL27b503050722/haplo.stats/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-haplo.stats/00new/haplo.stats/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (haplo.stats)