* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘h5lite’ ...
** this is package ‘h5lite’ version ‘2.1.1.0’
** package ‘h5lite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/tmp/RtmpIufoaM/R.INSTALL3f4de52830b006/h5lite/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c data.frame.c -o data.frame.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dimscales.c -o dimscales.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c info.c -o info.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c inspect.c -o inspect.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ls.c -o ls.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c organize.c -o organize.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read.c -o read.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o
util.c: In function ‘rtype_from_map’:
util.c:214:53: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=]
214 | snprintf(needle_full, sizeof(needle_full), ".int%d", bitwidth);
| ^~
util.c:214:48: note: directive argument in the range [-2147483648, 2147483640]
214 | snprintf(needle_full, sizeof(needle_full), ".int%d", bitwidth);
| ^~~~~~~~
In file included from /usr/include/stdio.h:970,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R.h:44,
from h5lite.h:4,
from util.c:1:
In function ‘snprintf’,
inlined from ‘rtype_from_map’ at util.c:214:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:10: note: ‘__builtin___snprintf_chk’ output between 6 and 16 bytes into a destination of size 12
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
util.c: In function ‘rtype_from_map’:
util.c:210:54: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=]
210 | snprintf(needle_full, sizeof(needle_full), ".uint%d", bitwidth);
| ^~
util.c:210:48: note: directive argument in the range [-2147483648, 2147483640]
210 | snprintf(needle_full, sizeof(needle_full), ".uint%d", bitwidth);
| ^~~~~~~~~
In function ‘snprintf’,
inlined from ‘rtype_from_map’ at util.c:210:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:10: note: ‘__builtin___snprintf_chk’ output between 7 and 17 bytes into a destination of size 12
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
util.c: In function ‘rtype_from_map’:
util.c:206:55: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 6 [-Wformat-truncation=]
206 | snprintf(needle_full, sizeof(needle_full), ".float%d", bitwidth);
| ^~
util.c:206:48: note: directive argument in the range [-2147483648, 2147483640]
206 | snprintf(needle_full, sizeof(needle_full), ".float%d", bitwidth);
| ^~~~~~~~~~
In function ‘snprintf’,
inlined from ‘rtype_from_map’ at util.c:206:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:10: note: ‘__builtin___snprintf_chk’ output between 8 and 18 bytes into a destination of size 12
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c write.c -o write.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG `/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c write_utils.c -o write_utils.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o h5lite.so data.frame.o dimscales.o info.o init.o inspect.o ls.o organize.o read.o util.o write.o write_utils.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/hdf5lib/lib -lhdf5z -lpthread -ldl -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIufoaM/R.INSTALL3f4de52830b006/h5lite/src'
make[1]: Entering directory '/tmp/RtmpIufoaM/R.INSTALL3f4de52830b006/h5lite/src'
make[1]: Leaving directory '/tmp/RtmpIufoaM/R.INSTALL3f4de52830b006/h5lite/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-h5lite/00new/h5lite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (h5lite)