• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘gtfstools/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘gtfstools’ version ‘1.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘gtfstools’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/9s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] ERROR Running examples in ‘gtfstools-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: convert_sf_to_shapes > ### Title: Convert a simple feature object into a 'shapes' table > ### Aliases: convert_sf_to_shapes > > ### ** Examples > > ## Don't show: > old_dt_threads <- data.table::setDTthreads(1) > on.exit(data.table::setDTthreads(old_dt_threads), add = TRUE) > ## End(Don't show) > data_path <- system.file("extdata/spo_gtfs.zip", package = "gtfstools") > gtfs <- read_gtfs(data_path) > > # first converting existing shapes table into a sf object > shapes_sf <- convert_shapes_to_sf(gtfs) > head(shapes_sf) Simple feature collection with 6 features and 1 field Geometry type: LINESTRING Dimension: XY Bounding box: xmin: -46.98404 ymin: -23.73644 xmax: -46.63535 ymax: -23.19474 Geodetic CRS: WGS 84   shape_id geometry 1 17846 LINESTRING (-46.63535 -23.5... 2 17847 LINESTRING (-46.87255 -23.1... 3 17848 LINESTRING (-46.64073 -23.5... 4 17849 LINESTRING (-46.98404 -23.5... 5 17850 LINESTRING (-46.77604 -23.5... 6 17851 LINESTRING (-46.69711 -23.7... > > # by default converts all shapes > result <- convert_sf_to_shapes(shapes_sf) Error in `[.data.table`(shapes_points, , `:=`(shape_dist_traveled, cumsum(dist_to_prev_point)), :   attempt access index 3/3 in VECTOR_ELT Calls: convert_sf_to_shapes -> calculate_shape_dist_traveled -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/1s] OK   Running ‘testthat.R’ [0s/1s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/16s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘filtering.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘filtering.Rmd’ --- re-building ‘gtfstools.Rmd’ using rmarkdown Quitting from gtfstools.Rmd:119-125 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 9/9 in VECTOR_ELT --- Backtrace:     ▆  1. └─gtfstools::get_trip_segment_duration(spo_gtfs, unit = "s")  2. ├─durations[, `:=`(segment, seq.int(1, .N, length.out = .N)), by = trip_id]  3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gtfstools.Rmd' failed with diagnostics: attempt access index 9/9 in VECTOR_ELT --- failed re-building ‘gtfstools.Rmd’ --- re-building ‘validating.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘validating.Rmd’ SUMMARY: processing the following file failed:   ‘gtfstools.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs