• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:19:12 UTC
• checking for file ‘growthPheno/DESCRIPTION’ ... OK
• this is package ‘growthPheno’ version ‘3.1.20’
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘growthPheno’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/6s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [4s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [5s/6s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/34s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [26s/36s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed traitSmooth 6.798 0.105 8.345 probeSmooths 4.232 0.023 6.728
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/7s] OK   Running ‘testthat.R’ [5s/6s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [11s/14s] OK
• checking HTML version of manual ... [5s/6s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0ekUO5’ ‘~/tmp/scratch/Rtmp0pG1qK’   ‘~/tmp/scratch/Rtmp0tnGEN’ ‘~/tmp/scratch/Rtmp0uQTJa’   ‘~/tmp/scratch/Rtmp0w0tZl’ ‘~/tmp/scratch/Rtmp13pB5N’   ‘~/tmp/scratch/Rtmp15JL0F’ ‘~/tmp/scratch/Rtmp1Qo72D’   ‘~/tmp/scratch/Rtmp1Xbqsw’ ‘~/tmp/scratch/Rtmp22dUo8’   ‘~/tmp/scratch/Rtmp2Da2hC’ ‘~/tmp/scratch/Rtmp2RjDY6’   ‘~/tmp/scratch/Rtmp2dSkGc’ ‘~/tmp/scratch/Rtmp2kkkmB’   ‘~/tmp/scratch/Rtmp33atgQ’ ‘~/tmp/scratch/Rtmp3GaAUr’   ‘~/tmp/scratch/Rtmp3NEmxT’ ‘~/tmp/scratch/Rtmp3efADi’   ‘~/tmp/scratch/Rtmp3krW9a’ ‘~/tmp/scratch/Rtmp46XH5K’   ‘~/tmp/scratch/Rtmp4CeuuV’ ‘~/tmp/scratch/Rtmp5EfD0z’   ‘~/tmp/scratch/Rtmp5YaeCk’ ‘~/tmp/scratch/Rtmp5kFZNR’   ‘~/tmp/scratch/Rtmp5pUbaB’ ‘~/tmp/scratch/Rtmp6JWgJ4’   ‘~/tmp/scratch/Rtmp6lluKu’ ‘~/tmp/scratch/Rtmp7AyVPF’   ‘~/tmp/scratch/Rtmp7C1n1o’ ‘~/tmp/scratch/Rtmp7KxZz2’   ‘~/tmp/scratch/Rtmp7O8ynf’ ‘~/tmp/scratch/Rtmp7e0lU9’   ‘~/tmp/scratch/Rtmp7uzAoz’ ‘~/tmp/scratch/Rtmp7z2czS’   ‘~/tmp/scratch/Rtmp8Dz055’ ‘~/tmp/scratch/Rtmp8slvhB’   ‘~/tmp/scratch/Rtmp91PpYZ’ ‘~/tmp/scratch/Rtmp9K7NKP’   ‘~/tmp/scratch/Rtmp9LylJF’ ‘~/tmp/scratch/Rtmp9WhvC6’   ‘~/tmp/scratch/Rtmp9iveU1’ ‘~/tmp/scratch/RtmpB3xODU’   ‘~/tmp/scratch/RtmpBlYguv’ ‘~/tmp/scratch/RtmpBnTIf7’   ‘~/tmp/scratch/RtmpCosy3b’ ‘~/tmp/scratch/RtmpCvcFIU’   ‘~/tmp/scratch/RtmpCz0DFz’ ‘~/tmp/scratch/RtmpDS6ME9’   ‘~/tmp/scratch/RtmpDqBgoA’ ‘~/tmp/scratch/RtmpFAt9pn’   ‘~/tmp/scratch/RtmpFN370U’ ‘~/tmp/scratch/RtmpFdD061’   ‘~/tmp/scratch/RtmpFkjkFm’ ‘~/tmp/scratch/RtmpFueJnK’   ‘~/tmp/scratch/RtmpGLzWaD’ ‘~/tmp/scratch/RtmpGaDeO8’   ‘~/tmp/scratch/RtmpGkAnsY’ ‘~/tmp/scratch/RtmpH1622O’   ‘~/tmp/scratch/RtmpHBek4g’ ‘~/tmp/scratch/RtmpIAqAFP’   ‘~/tmp/scratch/RtmpJ7GdFk’ ‘~/tmp/scratch/RtmpJLdJ4e’   ‘~/tmp/scratch/RtmpJUMiNx’ ‘~/tmp/scratch/RtmpKLRLmN’   ‘~/tmp/scratch/RtmpKcJd3D’ ‘~/tmp/scratch/RtmpLIVoSM’   ‘~/tmp/scratch/RtmpLjawsl’ ‘~/tmp/scratch/RtmpM9WXCl’   ‘~/tmp/scratch/RtmpMF21Yy’ ‘~/tmp/scratch/RtmpMbt4YL’   ‘~/tmp/scratch/RtmpN4f47A’ ‘~/tmp/scratch/RtmpNJqQAN’   ‘~/tmp/scratch/RtmpNOIpDk’ ‘~/tmp/scratch/RtmpNicvjb’   ‘~/tmp/scratch/RtmpPTIlMa’ ‘~/tmp/scratch/RtmpPoyABF’   ‘~/tmp/scratch/RtmpQSRumS’ ‘~/tmp/scratch/RtmpRM12Gq’   ‘~/tmp/scratch/RtmpRf69t7’ ‘~/tmp/scratch/RtmpRhfKyD’   ‘~/tmp/scratch/RtmpRpAX62’ ‘~/tmp/scratch/RtmpRvUqYX’   ‘~/tmp/scratch/RtmpTYt8oG’ ‘~/tmp/scratch/RtmpTZBWXf’   ‘~/tmp/scratch/RtmpTaiG78’ ‘~/tmp/scratch/RtmpVFhzWZ’   ‘~/tmp/scratch/RtmpVrrZfM’ ‘~/tmp/scratch/RtmpWmCHzT’   ‘~/tmp/scratch/RtmpWp2xrf’ ‘~/tmp/scratch/RtmpWrcSt8’   ‘~/tmp/scratch/RtmpXD8jWz’ ‘~/tmp/scratch/RtmpXQ12kc’   ‘~/tmp/scratch/RtmpXZI1td’ ‘~/tmp/scratch/RtmpXpsapx’   ‘~/tmp/scratch/RtmpXzFWwP’ ‘~/tmp/scratch/RtmpY2C4di’   ‘~/tmp/scratch/RtmpYNmNZc’ ‘~/tmp/scratch/RtmpYnC6tu’   ‘~/tmp/scratch/RtmpYxwGuu’ ‘~/tmp/scratch/RtmpZz3VBn’   ‘~/tmp/scratch/RtmpaYavuo’ ‘~/tmp/scratch/Rtmpba9tFD’   ‘~/tmp/scratch/Rtmpc8XiB6’ ‘~/tmp/scratch/RtmpcTR5R4’   ‘~/tmp/scratch/Rtmpd28jN7’ ‘~/tmp/scratch/Rtmpd3cc9s’   ‘~/tmp/scratch/RtmpdIjXlk’ ‘~/tmp/scratch/Rtmpdqwr0t’   ‘~/tmp/scratch/RtmpdyKCZQ’ ‘~/tmp/scratch/Rtmpe3WelB’   ‘~/tmp/scratch/RtmpecTOjG’ ‘~/tmp/scratch/Rtmpexrivq’   ‘~/tmp/scratch/RtmpfYPOav’ ‘~/tmp/scratch/RtmpfdRAiB’   ‘~/tmp/scratch/RtmpflvRv1’ ‘~/tmp/scratch/RtmpgpqCdZ’   ‘~/tmp/scratch/Rtmph1gmyP’ ‘~/tmp/scratch/RtmphlrF2C’   ‘~/tmp/scratch/RtmphuOlQN’ ‘~/tmp/scratch/Rtmphvttk0’   ‘~/tmp/scratch/RtmpiJXAAP’ ‘~/tmp/scratch/RtmpiJuuWC’   ‘~/tmp/scratch/RtmpiQJ5tp’ ‘~/tmp/scratch/RtmpieGMsg’   ‘~/tmp/scratch/RtmpimwWx8’ ‘~/tmp/scratch/RtmpjCU51D’   ‘~/tmp/scratch/RtmpkD73Ma’ ‘~/tmp/scratch/RtmpkLfQ4m’   ‘~/tmp/scratch/RtmpkMyyVh’ ‘~/tmp/scratch/RtmpkQs3k2’   ‘~/tmp/scratch/RtmpkusHwe’ ‘~/tmp/scratch/RtmplIbeZI’   ‘~/tmp/scratch/RtmplMXBog’ ‘~/tmp/scratch/Rtmpm8g8ci’   ‘~/tmp/scratch/RtmpmfyTOo’ ‘~/tmp/scratch/RtmpnpvPVS’   ‘~/tmp/scratch/RtmpoKC2ax’ ‘~/tmp/scratch/RtmpoKmenk’   ‘~/tmp/scratch/RtmppL7zYS’ ‘~/tmp/scratch/RtmppSOvN9’   ‘~/tmp/scratch/RtmppzdRMl’ ‘~/tmp/scratch/RtmpqXhXBG’   ‘~/tmp/scratch/RtmprQ2XcM’ ‘~/tmp/scratch/RtmpssC4bT’   ‘~/tmp/scratch/RtmptFv1NJ’ ‘~/tmp/scratch/RtmptM1fDR’   ‘~/tmp/scratch/RtmptMHcvW’ ‘~/tmp/scratch/RtmptUpiuM’   ‘~/tmp/scratch/RtmptbjjiQ’ ‘~/tmp/scratch/RtmpuE27yw’   ‘~/tmp/scratch/RtmpvT8u6P’ ‘~/tmp/scratch/RtmpvVb4yb’   ‘~/tmp/scratch/RtmpvldHDf’ ‘~/tmp/scratch/RtmpvmO2i9’   ‘~/tmp/scratch/Rtmpwzm9r8’ ‘~/tmp/scratch/Rtmpx7eJln’   ‘~/tmp/scratch/RtmpxF3Ke7’ ‘~/tmp/scratch/RtmpxQkCcX’   ‘~/tmp/scratch/RtmpxXixJ4’ ‘~/tmp/scratch/RtmpxajQw2’   ‘~/tmp/scratch/RtmpxjL0il’ ‘~/tmp/scratch/RtmpydzPHv’   ‘~/tmp/scratch/RtmpzrqdgV’ ‘~/tmp/scratch/RtmpzvIJJ4’   ‘~/tmp/scratch/xvfb-run.0A51aP’ ‘~/tmp/scratch/xvfb-run.0mfpFv’   ‘~/tmp/scratch/xvfb-run.10RMz9’ ‘~/tmp/scratch/xvfb-run.3AlSoU’   ‘~/tmp/scratch/xvfb-run.526NHn’ ‘~/tmp/scratch/xvfb-run.5UymdN’   ‘~/tmp/scratch/xvfb-run.6WuvvW’ ‘~/tmp/scratch/xvfb-run.6pZY67’   ‘~/tmp/scratch/xvfb-run.90b3nZ’ ‘~/tmp/scratch/xvfb-run.9DtOyp’   ‘~/tmp/scratch/xvfb-run.9PPXyB’ ‘~/tmp/scratch/xvfb-run.9rwd8s’   ‘~/tmp/scratch/xvfb-run.AqdO7v’ ‘~/tmp/scratch/xvfb-run.BZhUG0’   ‘~/tmp/scratch/xvfb-run.Be0yuq’ ‘~/tmp/scratch/xvfb-run.CbBwvn’   ‘~/tmp/scratch/xvfb-run.DJw6K3’ ‘~/tmp/scratch/xvfb-run.DV4JDE’   ‘~/tmp/scratch/xvfb-run.FVfSO6’ ‘~/tmp/scratch/xvfb-run.FYXZUx’   ‘~/tmp/scratch/xvfb-run.Foq6wU’ ‘~/tmp/scratch/xvfb-run.Gr0ytY’   ‘~/tmp/scratch/xvfb-run.HmnwRj’ ‘~/tmp/scratch/xvfb-run.KSblx9’   ‘~/tmp/scratch/xvfb-run.M84c7S’ ‘~/tmp/scratch/xvfb-run.Q2f7ZW’   ‘~/tmp/scratch/xvfb-run.QPuQFm’ ‘~/tmp/scratch/xvfb-run.QYQDbB’   ‘~/tmp/scratch/xvfb-run.TdDVhv’ ‘~/tmp/scratch/xvfb-run.UXzDtN’   ‘~/tmp/scratch/xvfb-run.VQAUAm’ ‘~/tmp/scratch/xvfb-run.VYCelR’   ‘~/tmp/scratch/xvfb-run.XsbFNo’ ‘~/tmp/scratch/xvfb-run.YXNIek’   ‘~/tmp/scratch/xvfb-run.YtxfAB’ ‘~/tmp/scratch/xvfb-run.a54wZa’   ‘~/tmp/scratch/xvfb-run.aKVRIL’ ‘~/tmp/scratch/xvfb-run.bdXW0K’   ‘~/tmp/scratch/xvfb-run.daBBZF’ ‘~/tmp/scratch/xvfb-run.f75Lsq’   ‘~/tmp/scratch/xvfb-run.fNY6SQ’ ‘~/tmp/scratch/xvfb-run.gCYcmR’   ‘~/tmp/scratch/xvfb-run.gEb747’ ‘~/tmp/scratch/xvfb-run.i4lrvl’   ‘~/tmp/scratch/xvfb-run.i6A12A’ ‘~/tmp/scratch/xvfb-run.iWwaOW’   ‘~/tmp/scratch/xvfb-run.iXu1XO’ ‘~/tmp/scratch/xvfb-run.ic12mV’   ‘~/tmp/scratch/xvfb-run.izpTu3’ ‘~/tmp/scratch/xvfb-run.jXUBuf’   ‘~/tmp/scratch/xvfb-run.jd5X76’ ‘~/tmp/scratch/xvfb-run.kb77JP’   ‘~/tmp/scratch/xvfb-run.kbAfIA’ ‘~/tmp/scratch/xvfb-run.ksM9ZH’   ‘~/tmp/scratch/xvfb-run.lVU9ku’ ‘~/tmp/scratch/xvfb-run.lyyFLt’   ‘~/tmp/scratch/xvfb-run.mvcmkB’ ‘~/tmp/scratch/xvfb-run.n5mJ7U’   ‘~/tmp/scratch/xvfb-run.pWcWUb’ ‘~/tmp/scratch/xvfb-run.qH8v0U’   ‘~/tmp/scratch/xvfb-run.qqi3gI’ ‘~/tmp/scratch/xvfb-run.rl084g’   ‘~/tmp/scratch/xvfb-run.rzdSBd’ ‘~/tmp/scratch/xvfb-run.uVSH5v’   ‘~/tmp/scratch/xvfb-run.uqzRME’ ‘~/tmp/scratch/xvfb-run.v7pg5R’   ‘~/tmp/scratch/xvfb-run.vi10qn’ ‘~/tmp/scratch/xvfb-run.w4Un9z’   ‘~/tmp/scratch/xvfb-run.w6rylD’ ‘~/tmp/scratch/xvfb-run.wpqdTZ’   ‘~/tmp/scratch/xvfb-run.x8phzE’ ‘~/tmp/scratch/xvfb-run.z8qnpw’
• DONE

Status: 1 NOTE