• using R Under development (unstable) (2025-11-03 r88979)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-7) 15.2.0     GNU Fortran (Debian 15.2.0-7) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘gprofiler2/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘gprofiler2’ version ‘0.2.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [0s/1s] NOTE Maintainer: ‘Liis Kolberg <liis.kolberg@ut.ee>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Liis",                       family = "Kolberg",                       role = c("aut", "cre"),                       email = "liis.kolberg@ut.ee"),                person(given = "Uku",                       family = "Raudvere",                       role = "aut",                       email = "uku.raudvere@ut.ee")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gprofiler2’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] ERROR Running examples in ‘gprofiler2-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: gorth > ### Title: Orthology search. > ### Aliases: gorth > > ### ** Examples > > gorth(c("Klf4","Pax5","Sox2","Nanog"), source_organism="mmusculus", target_organism="hsapiens") Error in gprofiler_request(url, body) :   There's an issue with your request to g:Profiler. Error code: 503. Please double check your input. If this doesn't help, then check your internet connection or contact us with a reproducible example on biit.support@ut.ee Calls: gorth -> gprofiler_request Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘gprofiler2.Rmd’ using rmarkdown Quitting from gprofiler2.Rmd:114-122 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `gprofiler_request()`: ! There's an issue with your request to g:Profiler. Error code: 503. Please double check your input. If this doesn't help, then check your internet connection or contact us with a reproducible example on biit.support@ut.ee --- Backtrace:     ▆  1. └─gprofiler2::gost(...)  2. └─gprofiler2::get_version_info(organism = organism)  3. └─gprofiler2:::gprofiler_request(url, body) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics: There's an issue with your request to g:Profiler. Error code: 503. Please double check your input. If this doesn't help, then check your internet connection or contact us with a reproducible example on biit.support@ut.ee --- failed re-building ‘gprofiler2.Rmd’ SUMMARY: processing the following file failed:   ‘gprofiler2.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE