* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘glyrepr’ ...
** this is package ‘glyrepr’ version ‘1.2.1’
** package ‘glyrepr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIyK5o9/R.INSTALL20332471471f4/glyrepr/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c array-validation.cpp -o array-validation.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c compact-arrays.cpp -o compact-arrays.o
compact-arrays.cpp:189:51: warning: trigraph ‘??-’ ignored, use ‘-trigraphs’ to enable [-Wtrigraphs]
  189 |     for (int node : f.edge_order) t.link[node] = "??-?";
compact-arrays.cpp:191:48: warning: trigraph ‘??-’ ignored, use ‘-trigraphs’ to enable [-Wtrigraphs]
  191 |     for (auto& part : f.parts) part.linkage = "??-?";
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c compact-igraph.cpp -o compact-igraph.o
compact-igraph.cpp: In function ‘bool {anonymous}::plain(SEXP, SEXPTYPE, R_xlen_t)’:
compact-igraph.cpp:91:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare]
   91 |   return TYPEOF(x) == type && Rf_xlength(x) == size && no_attributes(x);
      |          ~~~~~~~~~~^~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c compact-iupac.cpp -o compact-iupac.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c graph-counts.cpp -o graph-counts.o
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o glyrepr.so RcppExports.o array-validation.o compact-arrays.o compact-igraph.o compact-iupac.o graph-counts.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIyK5o9/R.INSTALL20332471471f4/glyrepr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIyK5o9/R.INSTALL20332471471f4/glyrepr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIyK5o9/R.INSTALL20332471471f4/glyrepr/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-glyrepr/00new/glyrepr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glyrepr)