• using R Under development (unstable) (2024-10-11 r87227)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-6) 14.2.0     GNU Fortran (Debian 14.2.0-6) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘ggseg/DESCRIPTION’ ... OK
• this is package ‘ggseg’ version ‘1.6.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘devtools’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ggseg’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... NOTE Problems with news in ‘NEWS.md’:   Cannot extract version info from the following section titles:     * Changes all data options to .data to decrease possibility of column naming overlap
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/12s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/9s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [19s/23s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [18s/22s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [24s/34s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘externalData.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/externalData_files/figure-html/unnamed-chunk-6-1.png 864x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49112 bytes Input file size = 49250 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37377   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37377 Output IDAT size = 37377 bytes (11735 bytes decrease) Output file size = 37455 bytes (11795 bytes = 23.95% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/externalData_files/figure-html/unnamed-chunk-7-1.png 864x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 80579 bytes Input file size = 80765 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58649   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58649 Output IDAT size = 58649 bytes (21930 bytes decrease) Output file size = 58727 bytes (22038 bytes = 27.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/externalData_files/figure-html/datasupp3-1.png 864x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 84376 bytes Input file size = 84574 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61887   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61887 Output IDAT size = 61887 bytes (22489 bytes decrease) Output file size = 61965 bytes (22609 bytes = 26.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/externalData_files/figure-html/duplicate-1.png 864x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103064 bytes Input file size = 103286 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73276   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73276 Output IDAT size = 73276 bytes (29788 bytes decrease) Output file size = 73354 bytes (29932 bytes = 28.98% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/externalData_files/figure-html/duplicatepipe-1.png 864x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103064 bytes Input file size = 103286 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73276   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73276 Output IDAT size = 73276 bytes (29788 bytes decrease) Output file size = 73354 bytes (29932 bytes = 28.98% decrease) --- finished re-building ‘externalData.Rmd’ --- re-building ‘freesurfer_files.Rmd’ using rmarkdown Quitting from lines 11-20 [unnamed-chunk-1] (freesurfer_files.Rmd) Error: processing vignette 'freesurfer_files.Rmd' failed with diagnostics: there is no package called 'devtools' --- failed re-building ‘freesurfer_files.Rmd’ --- re-building ‘ggseg.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-3-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51185 bytes Input file size = 51335 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41981   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41981 Output IDAT size = 41981 bytes (9204 bytes decrease) Output file size = 42059 bytes (9276 bytes = 18.07% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-4-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38290 bytes Input file size = 38416 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31187   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31187 Output IDAT size = 31187 bytes (7103 bytes decrease) Output file size = 31265 bytes (7151 bytes = 18.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-7-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38798 bytes Input file size = 38924 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31200   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31200 Output IDAT size = 31200 bytes (7598 bytes decrease) Output file size = 31278 bytes (7646 bytes = 19.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48612 bytes Input file size = 48750 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39539   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39539 Output IDAT size = 39539 bytes (9073 bytes decrease) Output file size = 39617 bytes (9133 bytes = 18.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-9-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38798 bytes Input file size = 38924 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31200   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31200 Output IDAT size = 31200 bytes (7598 bytes decrease) Output file size = 31278 bytes (7646 bytes = 19.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-9-2.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38568 bytes Input file size = 38694 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31043   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31043 Output IDAT size = 31043 bytes (7525 bytes decrease) Output file size = 31121 bytes (7573 bytes = 19.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-10-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39663 bytes Input file size = 39789 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32182   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32182 Output IDAT size = 32182 bytes (7481 bytes decrease) Output file size = 32260 bytes (7529 bytes = 18.92% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-10-2.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40984 bytes Input file size = 41122 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33070   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33070 Output IDAT size = 33070 bytes (7914 bytes decrease) Output file size = 33148 bytes (7974 bytes = 19.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-11-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28812 bytes Input file size = 28926 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22930   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22930 Output IDAT size = 22930 bytes (5882 bytes decrease) Output file size = 23008 bytes (5918 bytes = 20.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-13-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37355 bytes Input file size = 37481 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27791   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27791 Output IDAT size = 27791 bytes (9564 bytes decrease) Output file size = 27869 bytes (9612 bytes = 25.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-15-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45581 bytes Input file size = 45719 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33488   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33488 Output IDAT size = 33488 bytes (12093 bytes decrease) Output file size = 33566 bytes (12153 bytes = 26.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-16-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38290 bytes Input file size = 38416 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31187   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31187 Output IDAT size = 31187 bytes (7103 bytes decrease) Output file size = 31265 bytes (7151 bytes = 18.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-17-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24525 bytes Input file size = 24627 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17406   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17406 Output IDAT size = 17406 bytes (7119 bytes decrease) Output file size = 17484 bytes (7143 bytes = 29.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/vign_test/ggseg/vignettes/ggseg_files/figure-html/unnamed-chunk-18-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38142 bytes Input file size = 38268 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27392   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27392 Output IDAT size = 27392 bytes (10750 bytes decrease) Output file size = 27470 bytes (10798 bytes = 28.22% decrease) --- finished re-building ‘ggseg.Rmd’ SUMMARY: processing the following file failed:   ‘freesurfer_files.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE