• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:08:01 UTC
• checking for file ‘gggenes/DESCRIPTION’ ... OK
• this is package ‘gggenes’ version ‘0.7.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gggenes’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/12s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [60s/79s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [60s/78s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [14s/22s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0OGJFb’ ‘~/tmp/scratch/Rtmp0e8csN’   ‘~/tmp/scratch/Rtmp15Jpxg’ ‘~/tmp/scratch/Rtmp1NlDYj’   ‘~/tmp/scratch/Rtmp1TIafQ’ ‘~/tmp/scratch/Rtmp1mPF2D’   ‘~/tmp/scratch/Rtmp21GjFV’ ‘~/tmp/scratch/Rtmp34OkEB’   ‘~/tmp/scratch/Rtmp3s4zos’ ‘~/tmp/scratch/Rtmp3xHFlz’   ‘~/tmp/scratch/Rtmp4KDnTM’ ‘~/tmp/scratch/Rtmp4iGlEo’   ‘~/tmp/scratch/Rtmp54QqnS’ ‘~/tmp/scratch/Rtmp5QPAlj’   ‘~/tmp/scratch/Rtmp5SWvHW’ ‘~/tmp/scratch/Rtmp79TWBD’   ‘~/tmp/scratch/Rtmp7XuFkv’ ‘~/tmp/scratch/Rtmp7e05Xd’   ‘~/tmp/scratch/Rtmp7jTCgp’ ‘~/tmp/scratch/Rtmp8cDDpq’   ‘~/tmp/scratch/Rtmp8eqelb’ ‘~/tmp/scratch/Rtmp8gg3H9’   ‘~/tmp/scratch/Rtmp8rHwG6’ ‘~/tmp/scratch/Rtmp93c39t’   ‘~/tmp/scratch/RtmpAFha0v’ ‘~/tmp/scratch/RtmpB5blBc’   ‘~/tmp/scratch/RtmpBNMKzy’ ‘~/tmp/scratch/RtmpBh0NTV’   ‘~/tmp/scratch/RtmpCF0BHc’ ‘~/tmp/scratch/RtmpCptW77’   ‘~/tmp/scratch/RtmpCrxSOg’ ‘~/tmp/scratch/RtmpDHn9Hi’   ‘~/tmp/scratch/RtmpDkEZNc’ ‘~/tmp/scratch/RtmpE8rM5J’   ‘~/tmp/scratch/RtmpFRIvHe’ ‘~/tmp/scratch/RtmpFuFyAV’   ‘~/tmp/scratch/RtmpG2FTzQ’ ‘~/tmp/scratch/RtmpHI4AT4’   ‘~/tmp/scratch/RtmpHxjgx4’ ‘~/tmp/scratch/RtmpIQZ4ov’   ‘~/tmp/scratch/RtmpIVWMNi’ ‘~/tmp/scratch/RtmpJ0b5zL’   ‘~/tmp/scratch/RtmpJT7Rq0’ ‘~/tmp/scratch/RtmpJjatlE’   ‘~/tmp/scratch/RtmpKc3WIK’ ‘~/tmp/scratch/RtmpKqczgF’   ‘~/tmp/scratch/RtmpMNlzRT’ ‘~/tmp/scratch/RtmpMmuqYn’   ‘~/tmp/scratch/RtmpNrqmLi’ ‘~/tmp/scratch/RtmpO3iLXO’   ‘~/tmp/scratch/RtmpOFifi6’ ‘~/tmp/scratch/RtmpOqG4sb’   ‘~/tmp/scratch/RtmpOyprrK’ ‘~/tmp/scratch/RtmpPG5OCk’   ‘~/tmp/scratch/RtmpPitlNg’ ‘~/tmp/scratch/RtmpQGRj4X’   ‘~/tmp/scratch/RtmpRKOM8W’ ‘~/tmp/scratch/RtmpRT6T9r’   ‘~/tmp/scratch/RtmpRxAhsq’ ‘~/tmp/scratch/RtmpRyrYvY’   ‘~/tmp/scratch/RtmpS4L6co’ ‘~/tmp/scratch/RtmpSGxrnU’   ‘~/tmp/scratch/RtmpSTjtLR’ ‘~/tmp/scratch/RtmpTWu48t’   ‘~/tmp/scratch/RtmpTs3cpd’ ‘~/tmp/scratch/RtmpV7UgtK’   ‘~/tmp/scratch/RtmpVAvAKt’ ‘~/tmp/scratch/RtmpVQVz7F’   ‘~/tmp/scratch/RtmpWCsx7x’ ‘~/tmp/scratch/RtmpWv1qMI’   ‘~/tmp/scratch/RtmpXNYZgG’ ‘~/tmp/scratch/RtmpY7LVBF’   ‘~/tmp/scratch/RtmpYLcujb’ ‘~/tmp/scratch/RtmpYZShGI’   ‘~/tmp/scratch/RtmpYsPIsp’ ‘~/tmp/scratch/RtmpZYMkci’   ‘~/tmp/scratch/RtmpZzCIJB’ ‘~/tmp/scratch/RtmpaDu6oy’   ‘~/tmp/scratch/RtmpabKpN9’ ‘~/tmp/scratch/Rtmpap3U5f’   ‘~/tmp/scratch/RtmparbXQZ’ ‘~/tmp/scratch/Rtmpb4OqRW’   ‘~/tmp/scratch/RtmpbB0K4N’ ‘~/tmp/scratch/RtmpbIAMc0’   ‘~/tmp/scratch/RtmpbIc08b’ ‘~/tmp/scratch/RtmpbUUD7z’   ‘~/tmp/scratch/RtmpbVZIRD’ ‘~/tmp/scratch/Rtmpbj5g9w’   ‘~/tmp/scratch/RtmpcY4W3N’ ‘~/tmp/scratch/RtmpcauMqX’   ‘~/tmp/scratch/Rtmpczpw1a’ ‘~/tmp/scratch/RtmpdLCaHE’   ‘~/tmp/scratch/RtmpdRWG3L’ ‘~/tmp/scratch/RtmpdhIQpp’   ‘~/tmp/scratch/RtmpdudW7c’ ‘~/tmp/scratch/RtmpesqNZO’   ‘~/tmp/scratch/RtmpeyWeXQ’ ‘~/tmp/scratch/RtmpfWwbmC’   ‘~/tmp/scratch/RtmpgGCo1I’ ‘~/tmp/scratch/RtmpgHcGG1’   ‘~/tmp/scratch/Rtmph1qMio’ ‘~/tmp/scratch/RtmphHu8ux’   ‘~/tmp/scratch/RtmphLAeV6’ ‘~/tmp/scratch/RtmphzlFdb’   ‘~/tmp/scratch/Rtmpi1C57O’ ‘~/tmp/scratch/RtmpiRAEjX’   ‘~/tmp/scratch/RtmpiiptLx’ ‘~/tmp/scratch/RtmpixhDFk’   ‘~/tmp/scratch/Rtmpjwspfs’ ‘~/tmp/scratch/RtmpkYlLEU’   ‘~/tmp/scratch/RtmpkcrKaD’ ‘~/tmp/scratch/RtmpksOW2i’   ‘~/tmp/scratch/RtmpkyldkY’ ‘~/tmp/scratch/RtmplZQcxi’   ‘~/tmp/scratch/RtmpmjaIQE’ ‘~/tmp/scratch/Rtmpn9Q6H8’   ‘~/tmp/scratch/Rtmpnw53q1’ ‘~/tmp/scratch/RtmpoEhjBl’   ‘~/tmp/scratch/RtmpoVEvZv’ ‘~/tmp/scratch/RtmpoYIE1w’   ‘~/tmp/scratch/Rtmpq5P9pv’ ‘~/tmp/scratch/Rtmpqgky99’   ‘~/tmp/scratch/Rtmpr7NO7Q’ ‘~/tmp/scratch/Rtmpr8SOb9’   ‘~/tmp/scratch/RtmpsKwQoY’ ‘~/tmp/scratch/Rtmpsc43EQ’   ‘~/tmp/scratch/Rtmpt1YQ7p’ ‘~/tmp/scratch/RtmptoqrFx’   ‘~/tmp/scratch/RtmptuUvKE’ ‘~/tmp/scratch/Rtmpu6lNlS’   ‘~/tmp/scratch/RtmpuKf9mI’ ‘~/tmp/scratch/RtmpusFWUL’   ‘~/tmp/scratch/RtmpvCL1GX’ ‘~/tmp/scratch/RtmpvWoQGb’   ‘~/tmp/scratch/Rtmpvf0p0j’ ‘~/tmp/scratch/Rtmpvnjjh0’   ‘~/tmp/scratch/RtmpwUXGjL’ ‘~/tmp/scratch/Rtmpwbbp49’   ‘~/tmp/scratch/RtmpwoFclz’ ‘~/tmp/scratch/RtmpxV5FpC’   ‘~/tmp/scratch/RtmpxrbsPi’ ‘~/tmp/scratch/RtmpxzyfP3’   ‘~/tmp/scratch/RtmpyErhMe’ ‘~/tmp/scratch/RtmpyeKFQP’   ‘~/tmp/scratch/RtmpysY48w’ ‘~/tmp/scratch/Rtmpyzik5S’   ‘~/tmp/scratch/RtmpzCG91h’ ‘~/tmp/scratch/RtmpzI7b7B’   ‘~/tmp/scratch/RtmpzzdLWz’   ‘~/tmp/scratch/quarto-session77c795c9a3eeca2b’   ‘~/tmp/scratch/xvfb-run.0yufMV’ ‘~/tmp/scratch/xvfb-run.4BJ20y’   ‘~/tmp/scratch/xvfb-run.5wFrCF’ ‘~/tmp/scratch/xvfb-run.72uEld’   ‘~/tmp/scratch/xvfb-run.9RhELX’ ‘~/tmp/scratch/xvfb-run.A9NeFn’   ‘~/tmp/scratch/xvfb-run.ARf29r’ ‘~/tmp/scratch/xvfb-run.Amo13r’   ‘~/tmp/scratch/xvfb-run.B19F11’ ‘~/tmp/scratch/xvfb-run.BFoY01’   ‘~/tmp/scratch/xvfb-run.BYZkKW’ ‘~/tmp/scratch/xvfb-run.Db5tbP’   ‘~/tmp/scratch/xvfb-run.EU9uKy’ ‘~/tmp/scratch/xvfb-run.IACXdT’   ‘~/tmp/scratch/xvfb-run.J25nsK’ ‘~/tmp/scratch/xvfb-run.JifTtY’   ‘~/tmp/scratch/xvfb-run.Joljej’ ‘~/tmp/scratch/xvfb-run.K8WKFV’   ‘~/tmp/scratch/xvfb-run.KmVGcG’ ‘~/tmp/scratch/xvfb-run.LDk1a9’   ‘~/tmp/scratch/xvfb-run.LV3mad’ ‘~/tmp/scratch/xvfb-run.LdDfh6’   ‘~/tmp/scratch/xvfb-run.NSzMOX’ ‘~/tmp/scratch/xvfb-run.O4yN3k’   ‘~/tmp/scratch/xvfb-run.P37MJv’ ‘~/tmp/scratch/xvfb-run.PI7KpK’   ‘~/tmp/scratch/xvfb-run.PudenH’ ‘~/tmp/scratch/xvfb-run.ROrSGg’   ‘~/tmp/scratch/xvfb-run.SKs7BV’ ‘~/tmp/scratch/xvfb-run.TUcdos’   ‘~/tmp/scratch/xvfb-run.UDMnCm’ ‘~/tmp/scratch/xvfb-run.UhmqwK’   ‘~/tmp/scratch/xvfb-run.UiZFCY’ ‘~/tmp/scratch/xvfb-run.X880K7’   ‘~/tmp/scratch/xvfb-run.ZzGAaT’ ‘~/tmp/scratch/xvfb-run.aHUcmX’   ‘~/tmp/scratch/xvfb-run.bdj58B’ ‘~/tmp/scratch/xvfb-run.dJxztL’   ‘~/tmp/scratch/xvfb-run.dXDWRk’ ‘~/tmp/scratch/xvfb-run.eKRy9o’   ‘~/tmp/scratch/xvfb-run.eWz6TY’ ‘~/tmp/scratch/xvfb-run.eeGlvI’   ‘~/tmp/scratch/xvfb-run.fcHYNX’ ‘~/tmp/scratch/xvfb-run.gJ7hXR’   ‘~/tmp/scratch/xvfb-run.hG8VLo’ ‘~/tmp/scratch/xvfb-run.j8aWro’   ‘~/tmp/scratch/xvfb-run.kB81pI’ ‘~/tmp/scratch/xvfb-run.knmQ2h’   ‘~/tmp/scratch/xvfb-run.l0EbcE’ ‘~/tmp/scratch/xvfb-run.nDnM0s’   ‘~/tmp/scratch/xvfb-run.p6Arve’ ‘~/tmp/scratch/xvfb-run.rMgpQT’   ‘~/tmp/scratch/xvfb-run.sGu9vw’ ‘~/tmp/scratch/xvfb-run.tj3NOM’   ‘~/tmp/scratch/xvfb-run.uktXRx’ ‘~/tmp/scratch/xvfb-run.v78Ou0’   ‘~/tmp/scratch/xvfb-run.vMeFY9’ ‘~/tmp/scratch/xvfb-run.vZpKks’   ‘~/tmp/scratch/xvfb-run.w7y9kx’ ‘~/tmp/scratch/xvfb-run.wWPN9r’   ‘~/tmp/scratch/xvfb-run.xGRuL4’ ‘~/tmp/scratch/xvfb-run.y3AePp’   ‘~/tmp/scratch/xvfb-run.ya26Qt’
• DONE

Status: 1 NOTE