• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:07:32 UTC
• checking for file ‘gggenes/DESCRIPTION’ ... OK
• this is package ‘gggenes’ version ‘0.7.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gggenes’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/10s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/13s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [59s/66s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [58s/65s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [13s/15s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp09fmt4’ ‘~/tmp/scratch/Rtmp0LFc16’   ‘~/tmp/scratch/Rtmp0zX81m’ ‘~/tmp/scratch/Rtmp1tgVfh’   ‘~/tmp/scratch/Rtmp2LrIou’ ‘~/tmp/scratch/Rtmp2id1JS’   ‘~/tmp/scratch/Rtmp30TtD1’ ‘~/tmp/scratch/Rtmp3F87Ns’   ‘~/tmp/scratch/Rtmp3O1O1Q’ ‘~/tmp/scratch/Rtmp53622l’   ‘~/tmp/scratch/Rtmp59ViIS’ ‘~/tmp/scratch/Rtmp5ezilB’   ‘~/tmp/scratch/Rtmp6rBF5O’ ‘~/tmp/scratch/Rtmp6wcRtF’   ‘~/tmp/scratch/Rtmp73sGRZ’ ‘~/tmp/scratch/Rtmp79kiVW’   ‘~/tmp/scratch/Rtmp7jbTzX’ ‘~/tmp/scratch/Rtmp8DJANs’   ‘~/tmp/scratch/Rtmp8TrRaJ’ ‘~/tmp/scratch/Rtmp9rLvmF’   ‘~/tmp/scratch/RtmpAjO4fF’ ‘~/tmp/scratch/RtmpBhJpDr’   ‘~/tmp/scratch/RtmpEIDKGT’ ‘~/tmp/scratch/RtmpER5Q6s’   ‘~/tmp/scratch/RtmpF9CEnm’ ‘~/tmp/scratch/RtmpFUbRMJ’   ‘~/tmp/scratch/RtmpGJ37rR’ ‘~/tmp/scratch/RtmpH8Dqlk’   ‘~/tmp/scratch/RtmpHVSdBd’ ‘~/tmp/scratch/RtmpHoyvUB’   ‘~/tmp/scratch/RtmpHrz69s’ ‘~/tmp/scratch/RtmpHwq7zN’   ‘~/tmp/scratch/RtmpIi0wlZ’ ‘~/tmp/scratch/RtmpInVdUr’   ‘~/tmp/scratch/RtmpJCa48k’ ‘~/tmp/scratch/RtmpJoormV’   ‘~/tmp/scratch/RtmpK2dnNp’ ‘~/tmp/scratch/RtmpKXT9mY’   ‘~/tmp/scratch/RtmpKeRKH5’ ‘~/tmp/scratch/RtmpLPFOYj’   ‘~/tmp/scratch/RtmpLwXjM5’ ‘~/tmp/scratch/RtmpM68pyG’   ‘~/tmp/scratch/RtmpMRrbvy’ ‘~/tmp/scratch/RtmpNEHImI’   ‘~/tmp/scratch/RtmpNEdTlp’ ‘~/tmp/scratch/RtmpNGYdPI’   ‘~/tmp/scratch/RtmpNSI7dN’ ‘~/tmp/scratch/RtmpNz0oua’   ‘~/tmp/scratch/RtmpOaSBr9’ ‘~/tmp/scratch/RtmpOlCV0I’   ‘~/tmp/scratch/RtmpOxL87g’ ‘~/tmp/scratch/RtmpQ6TYQC’   ‘~/tmp/scratch/RtmpQAcETa’ ‘~/tmp/scratch/RtmpQKiE5l’   ‘~/tmp/scratch/RtmpQmTO9D’ ‘~/tmp/scratch/RtmpQtvkU7’   ‘~/tmp/scratch/RtmpROocxe’ ‘~/tmp/scratch/RtmpRpfYOh’   ‘~/tmp/scratch/RtmpS6yBq3’ ‘~/tmp/scratch/RtmpSBO8VS’   ‘~/tmp/scratch/RtmpSDzCLj’ ‘~/tmp/scratch/RtmpSc1ZYB’   ‘~/tmp/scratch/RtmpStqPuY’ ‘~/tmp/scratch/RtmpSwL8fD’   ‘~/tmp/scratch/RtmpT7y2qB’ ‘~/tmp/scratch/RtmpTM1xIp’   ‘~/tmp/scratch/RtmpTMAc6w’ ‘~/tmp/scratch/RtmpU37wY0’   ‘~/tmp/scratch/RtmpUdAZyf’ ‘~/tmp/scratch/RtmpUsgdBH’   ‘~/tmp/scratch/RtmpVKaPJt’ ‘~/tmp/scratch/RtmpVdmi7e’   ‘~/tmp/scratch/RtmpVqBisF’ ‘~/tmp/scratch/RtmpWyi3zI’   ‘~/tmp/scratch/RtmpXLpAor’ ‘~/tmp/scratch/RtmpZ8Ewa3’   ‘~/tmp/scratch/RtmpZO3gnk’ ‘~/tmp/scratch/RtmpZUdcAh’   ‘~/tmp/scratch/Rtmpa5qWX2’ ‘~/tmp/scratch/RtmpaD36Ar’   ‘~/tmp/scratch/RtmpaEKgFe’ ‘~/tmp/scratch/RtmpaEKpMk’   ‘~/tmp/scratch/RtmpbY0LNH’ ‘~/tmp/scratch/RtmpbllZq7’   ‘~/tmp/scratch/Rtmpc2UQyz’ ‘~/tmp/scratch/RtmpcCHaBA’   ‘~/tmp/scratch/RtmpcI6BQI’ ‘~/tmp/scratch/RtmpctxbAx’   ‘~/tmp/scratch/RtmpczIxna’ ‘~/tmp/scratch/RtmpdGywzT’   ‘~/tmp/scratch/RtmpeLmFyf’ ‘~/tmp/scratch/RtmpeWHZMb’   ‘~/tmp/scratch/RtmpeuJYjl’ ‘~/tmp/scratch/RtmpewFjkZ’   ‘~/tmp/scratch/Rtmpf2Rv84’ ‘~/tmp/scratch/Rtmpf9j8Tm’   ‘~/tmp/scratch/RtmpfAZ0Q6’ ‘~/tmp/scratch/RtmpgBrwkc’   ‘~/tmp/scratch/RtmpgESrOy’ ‘~/tmp/scratch/RtmpgIrf2Z’   ‘~/tmp/scratch/Rtmph0rGmC’ ‘~/tmp/scratch/RtmphwHv6i’   ‘~/tmp/scratch/Rtmpi5rM9O’ ‘~/tmp/scratch/RtmpiEsNHz’   ‘~/tmp/scratch/RtmpiLhdAa’ ‘~/tmp/scratch/RtmpiUxOeB’   ‘~/tmp/scratch/Rtmpii581C’ ‘~/tmp/scratch/Rtmpik6n1N’   ‘~/tmp/scratch/RtmpjT0jrX’ ‘~/tmp/scratch/RtmpjTcZ7q’   ‘~/tmp/scratch/RtmpjpG5mv’ ‘~/tmp/scratch/RtmpkOJ0Yc’   ‘~/tmp/scratch/RtmpkTHf4u’ ‘~/tmp/scratch/RtmpkwbBve’   ‘~/tmp/scratch/RtmplxYmky’ ‘~/tmp/scratch/RtmpmICCTD’   ‘~/tmp/scratch/RtmpmWgryB’ ‘~/tmp/scratch/Rtmpn0hX1R’   ‘~/tmp/scratch/Rtmpn7t9qp’ ‘~/tmp/scratch/RtmpnQrFI1’   ‘~/tmp/scratch/RtmpnZ0all’ ‘~/tmp/scratch/RtmpnpnypC’   ‘~/tmp/scratch/RtmpomswWZ’ ‘~/tmp/scratch/Rtmpovm5Z7’   ‘~/tmp/scratch/RtmppLWFro’ ‘~/tmp/scratch/RtmppRfhOp’   ‘~/tmp/scratch/RtmppYnqaM’ ‘~/tmp/scratch/RtmpqLkGfc’   ‘~/tmp/scratch/RtmprHAdWf’ ‘~/tmp/scratch/RtmprIi5bY’   ‘~/tmp/scratch/RtmprfwVB4’ ‘~/tmp/scratch/Rtmprvn0ds’   ‘~/tmp/scratch/Rtmps066rM’ ‘~/tmp/scratch/RtmpsXnkkp’   ‘~/tmp/scratch/RtmptO8weB’ ‘~/tmp/scratch/RtmpthoTAj’   ‘~/tmp/scratch/RtmptrBaS5’ ‘~/tmp/scratch/RtmpuvwVZB’   ‘~/tmp/scratch/RtmpvimWFJ’ ‘~/tmp/scratch/RtmpvlqKRu’   ‘~/tmp/scratch/RtmpvqwAdA’ ‘~/tmp/scratch/RtmpvyeQSQ’   ‘~/tmp/scratch/RtmpwGcASl’ ‘~/tmp/scratch/RtmpwazXdJ’   ‘~/tmp/scratch/RtmpxTXWJy’ ‘~/tmp/scratch/Rtmpy8qcti’   ‘~/tmp/scratch/Rtmpz1Gar8’ ‘~/tmp/scratch/RtmpzFx0C9’   ‘~/tmp/scratch/RtmpzRmqWC’ ‘~/tmp/scratch/RtmpztSzom’   ‘~/tmp/scratch/quarto-session3615f94aa903f5e2’   ‘~/tmp/scratch/quarto-session5ae806e39305dd8a’   ‘~/tmp/scratch/quarto-sessionc93bf4906841e63f’   ‘~/tmp/scratch/xvfb-run.0QqW2z’ ‘~/tmp/scratch/xvfb-run.1VRbBI’   ‘~/tmp/scratch/xvfb-run.4N7U64’ ‘~/tmp/scratch/xvfb-run.4vmaWa’   ‘~/tmp/scratch/xvfb-run.6Ap9S6’ ‘~/tmp/scratch/xvfb-run.6MXWza’   ‘~/tmp/scratch/xvfb-run.6a5apU’ ‘~/tmp/scratch/xvfb-run.6dtToT’   ‘~/tmp/scratch/xvfb-run.7viW1V’ ‘~/tmp/scratch/xvfb-run.8jJAD2’   ‘~/tmp/scratch/xvfb-run.DGmNmg’ ‘~/tmp/scratch/xvfb-run.Eqqicb’   ‘~/tmp/scratch/xvfb-run.GolCC4’ ‘~/tmp/scratch/xvfb-run.HdNNC5’   ‘~/tmp/scratch/xvfb-run.IqKq49’ ‘~/tmp/scratch/xvfb-run.IywGT2’   ‘~/tmp/scratch/xvfb-run.MObpWn’ ‘~/tmp/scratch/xvfb-run.Mn9o5A’   ‘~/tmp/scratch/xvfb-run.NE8XTG’ ‘~/tmp/scratch/xvfb-run.PZ6FR0’   ‘~/tmp/scratch/xvfb-run.ROyeS6’ ‘~/tmp/scratch/xvfb-run.RT7UGm’   ‘~/tmp/scratch/xvfb-run.SBfbV1’ ‘~/tmp/scratch/xvfb-run.SiKTIb’   ‘~/tmp/scratch/xvfb-run.TaaiAf’ ‘~/tmp/scratch/xvfb-run.UCruO2’   ‘~/tmp/scratch/xvfb-run.UZQbmm’ ‘~/tmp/scratch/xvfb-run.Uo8Hgt’   ‘~/tmp/scratch/xvfb-run.UpgKmq’ ‘~/tmp/scratch/xvfb-run.VSWZs2’   ‘~/tmp/scratch/xvfb-run.VtzEVE’ ‘~/tmp/scratch/xvfb-run.Xuxmmi’   ‘~/tmp/scratch/xvfb-run.XzWmrW’ ‘~/tmp/scratch/xvfb-run.a5rRLA’   ‘~/tmp/scratch/xvfb-run.d1JeCY’ ‘~/tmp/scratch/xvfb-run.dVacXq’   ‘~/tmp/scratch/xvfb-run.eG65yU’ ‘~/tmp/scratch/xvfb-run.ebSQEQ’   ‘~/tmp/scratch/xvfb-run.f6s2gn’ ‘~/tmp/scratch/xvfb-run.gNiLIX’   ‘~/tmp/scratch/xvfb-run.gOa8ae’ ‘~/tmp/scratch/xvfb-run.j6aBKZ’   ‘~/tmp/scratch/xvfb-run.jfxOWr’ ‘~/tmp/scratch/xvfb-run.jjTSHP’   ‘~/tmp/scratch/xvfb-run.jzluhp’ ‘~/tmp/scratch/xvfb-run.kAETUc’   ‘~/tmp/scratch/xvfb-run.lRWTpI’ ‘~/tmp/scratch/xvfb-run.lXQTlL’   ‘~/tmp/scratch/xvfb-run.n4DzOO’ ‘~/tmp/scratch/xvfb-run.o8Hec5’   ‘~/tmp/scratch/xvfb-run.pIdNsC’ ‘~/tmp/scratch/xvfb-run.pZ6Izu’   ‘~/tmp/scratch/xvfb-run.qZrvAL’ ‘~/tmp/scratch/xvfb-run.r0BB2w’   ‘~/tmp/scratch/xvfb-run.sBLr9U’ ‘~/tmp/scratch/xvfb-run.sW9982’   ‘~/tmp/scratch/xvfb-run.tSdf9K’ ‘~/tmp/scratch/xvfb-run.tZ5yYc’   ‘~/tmp/scratch/xvfb-run.tct5Y0’ ‘~/tmp/scratch/xvfb-run.yr0VTY’   ‘~/tmp/scratch/xvfb-run.yvkCrD’ ‘~/.cache/quarto/sass/sass.kv-shm’   ‘~/.cache/quarto/sass/sass.kv-wal’
• DONE

Status: 1 NOTE