• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:03:07 UTC
• checking for file ‘genetics/DESCRIPTION’ ... OK
• this is package ‘genetics’ version ‘1.3.8.1.3’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Gregory Warnes <greg@warnes.net>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Gregory",                       family = "Warnes",                       role = c("aut", "cre"),                       email = "greg@warnes.net"),                person(given = c("with", "contributions", "from", "Gregor"),                       family = "Gorjanc",                       role = "aut"),                person(given = "Friedrich",                       family = "Leisch",                       role = "aut"),                person(given = "Michael",                       family = "Man.",                       role = "aut")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘genetics’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/9s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ? checkRd: (-1) LD.Rd:86-87: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:48-58: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:59-76: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [7s/8s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] OK   Running ‘ci.balance.R’ [0s/1s]   Running ‘makeGenotype_with_sep.R’ [0s/0s]   Running ‘test.NA.R’ [0s/0s]
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0QeKdB’ ‘~/tmp/scratch/Rtmp1lvOll’   ‘~/tmp/scratch/Rtmp1rrDxn’ ‘~/tmp/scratch/Rtmp2YiAtq’   ‘~/tmp/scratch/Rtmp2tTgJB’ ‘~/tmp/scratch/Rtmp3BJyJ4’   ‘~/tmp/scratch/Rtmp3JI7Hb’ ‘~/tmp/scratch/Rtmp3VeNdx’   ‘~/tmp/scratch/Rtmp3c1pfR’ ‘~/tmp/scratch/Rtmp3k9rqp’   ‘~/tmp/scratch/Rtmp3onKV2’ ‘~/tmp/scratch/Rtmp3vZAIu’   ‘~/tmp/scratch/Rtmp45HsPJ’ ‘~/tmp/scratch/Rtmp4pBHbW’   ‘~/tmp/scratch/Rtmp5jEsbU’ ‘~/tmp/scratch/Rtmp61tkEH’   ‘~/tmp/scratch/Rtmp62eW3g’ ‘~/tmp/scratch/Rtmp7H3nP8’   ‘~/tmp/scratch/Rtmp7P2ixe’ ‘~/tmp/scratch/Rtmp7biZNs’   ‘~/tmp/scratch/Rtmp8SXZIE’ ‘~/tmp/scratch/Rtmp9ExMRa’   ‘~/tmp/scratch/Rtmp9JCode’ ‘~/tmp/scratch/RtmpBJTcd7’   ‘~/tmp/scratch/RtmpCgmha9’ ‘~/tmp/scratch/RtmpCkvz6A’   ‘~/tmp/scratch/RtmpCp4QdU’ ‘~/tmp/scratch/RtmpDh8JCu’   ‘~/tmp/scratch/RtmpDntfdr’ ‘~/tmp/scratch/RtmpEBVmOt’   ‘~/tmp/scratch/RtmpFFtWuB’ ‘~/tmp/scratch/RtmpFGs7I4’   ‘~/tmp/scratch/RtmpFmLP9M’ ‘~/tmp/scratch/RtmpGcscMw’   ‘~/tmp/scratch/RtmpGgHKLP’ ‘~/tmp/scratch/RtmpJB8Sbz’   ‘~/tmp/scratch/RtmpK7X6lA’ ‘~/tmp/scratch/RtmpKmvCR0’   ‘~/tmp/scratch/RtmpLaSGp7’ ‘~/tmp/scratch/RtmpMy6yiM’   ‘~/tmp/scratch/RtmpNTJYls’ ‘~/tmp/scratch/RtmpNb7h65’   ‘~/tmp/scratch/RtmpNdu9Yf’ ‘~/tmp/scratch/RtmpNe0MNO’   ‘~/tmp/scratch/RtmpNx4Tcb’ ‘~/tmp/scratch/RtmpODHB5T’   ‘~/tmp/scratch/RtmpOKAF9b’ ‘~/tmp/scratch/RtmpOjOgbw’   ‘~/tmp/scratch/RtmpPkMATO’ ‘~/tmp/scratch/RtmpQRE2ZB’   ‘~/tmp/scratch/RtmpQfKre0’ ‘~/tmp/scratch/RtmpSoKwIO’   ‘~/tmp/scratch/RtmpT0qQVl’ ‘~/tmp/scratch/RtmpT4NT7l’   ‘~/tmp/scratch/RtmpTjqjqV’ ‘~/tmp/scratch/RtmpTnROVO’   ‘~/tmp/scratch/RtmpToet8l’ ‘~/tmp/scratch/RtmpUR1aH5’   ‘~/tmp/scratch/RtmpUeHz8S’ ‘~/tmp/scratch/RtmpV6o2rv’   ‘~/tmp/scratch/RtmpVYlGcG’ ‘~/tmp/scratch/RtmpVZZU6V’   ‘~/tmp/scratch/RtmpVveqgN’ ‘~/tmp/scratch/RtmpWxSurQ’   ‘~/tmp/scratch/RtmpWygwBY’ ‘~/tmp/scratch/RtmpY0vUjv’   ‘~/tmp/scratch/RtmpYEU0ha’ ‘~/tmp/scratch/RtmpYTajm2’   ‘~/tmp/scratch/RtmpYr8u31’ ‘~/tmp/scratch/RtmpYwK7sQ’   ‘~/tmp/scratch/RtmpZYeyBh’ ‘~/tmp/scratch/Rtmpa2a5qw’   ‘~/tmp/scratch/Rtmpa7kTKh’ ‘~/tmp/scratch/RtmpaPK6s9’   ‘~/tmp/scratch/RtmpabRIzj’ ‘~/tmp/scratch/RtmpbXArkv’   ‘~/tmp/scratch/RtmpcThMdl’ ‘~/tmp/scratch/RtmpdbFqex’   ‘~/tmp/scratch/Rtmpdkgbci’ ‘~/tmp/scratch/RtmpeSEbcX’   ‘~/tmp/scratch/RtmpewiBdq’ ‘~/tmp/scratch/Rtmpf6EF20’   ‘~/tmp/scratch/Rtmpf8I4rW’ ‘~/tmp/scratch/RtmpfLDoYQ’   ‘~/tmp/scratch/Rtmpfsvve7’ ‘~/tmp/scratch/RtmpfzqZaC’   ‘~/tmp/scratch/Rtmpg0AH2j’ ‘~/tmp/scratch/Rtmpg5j83o’   ‘~/tmp/scratch/RtmpgTaVj4’ ‘~/tmp/scratch/RtmphJ1AAZ’   ‘~/tmp/scratch/Rtmphl5NIT’ ‘~/tmp/scratch/Rtmpi1yhDF’   ‘~/tmp/scratch/RtmpiThtXy’ ‘~/tmp/scratch/Rtmpj4aZTk’   ‘~/tmp/scratch/RtmpjNLGKB’ ‘~/tmp/scratch/RtmpjqArM4’   ‘~/tmp/scratch/RtmpkWMbxZ’ ‘~/tmp/scratch/Rtmpl0QwoM’   ‘~/tmp/scratch/RtmplGsR06’ ‘~/tmp/scratch/Rtmpm5YQCE’   ‘~/tmp/scratch/Rtmpm7VsPI’ ‘~/tmp/scratch/Rtmpm7gMPw’   ‘~/tmp/scratch/RtmpnHFACN’ ‘~/tmp/scratch/RtmpnKiMXX’   ‘~/tmp/scratch/RtmpnZT0Hu’ ‘~/tmp/scratch/RtmppE4KZK’   ‘~/tmp/scratch/RtmppdMoLd’ ‘~/tmp/scratch/RtmppeFDoV’   ‘~/tmp/scratch/Rtmppr3G9H’ ‘~/tmp/scratch/Rtmpqadkkq’   ‘~/tmp/scratch/RtmprRpIvo’ ‘~/tmp/scratch/Rtmps6V5lg’   ‘~/tmp/scratch/Rtmps922VV’ ‘~/tmp/scratch/RtmpsUqlB7’   ‘~/tmp/scratch/RtmptAT0R1’ ‘~/tmp/scratch/RtmptBfH7f’   ‘~/tmp/scratch/RtmptFlo3t’ ‘~/tmp/scratch/RtmptRIQoT’   ‘~/tmp/scratch/RtmptliDRX’ ‘~/tmp/scratch/RtmptxlVmt’   ‘~/tmp/scratch/RtmpuXW8zw’ ‘~/tmp/scratch/RtmpunLM4G’   ‘~/tmp/scratch/RtmpuqyJY9’ ‘~/tmp/scratch/RtmpusMlQM’   ‘~/tmp/scratch/RtmpvhXvFL’ ‘~/tmp/scratch/Rtmpw60dOC’   ‘~/tmp/scratch/RtmpyO7S20’ ‘~/tmp/scratch/Rtmpyntp8b’   ‘~/tmp/scratch/RtmpzAlDJl’ ‘~/tmp/scratch/xvfb-run.37Ufox’   ‘~/tmp/scratch/xvfb-run.3TQP85’ ‘~/tmp/scratch/xvfb-run.4ITMX9’   ‘~/tmp/scratch/xvfb-run.9TWsUK’ ‘~/tmp/scratch/xvfb-run.CGDvps’   ‘~/tmp/scratch/xvfb-run.FAcOgl’ ‘~/tmp/scratch/xvfb-run.FDhFjs’   ‘~/tmp/scratch/xvfb-run.Gkm1Yh’ ‘~/tmp/scratch/xvfb-run.KFTrIt’   ‘~/tmp/scratch/xvfb-run.MrAjZB’ ‘~/tmp/scratch/xvfb-run.NWFwCQ’   ‘~/tmp/scratch/xvfb-run.O3xVzw’ ‘~/tmp/scratch/xvfb-run.OX0cZR’   ‘~/tmp/scratch/xvfb-run.PgDjww’ ‘~/tmp/scratch/xvfb-run.Q8c0yp’   ‘~/tmp/scratch/xvfb-run.QNCBpW’ ‘~/tmp/scratch/xvfb-run.ScGWPh’   ‘~/tmp/scratch/xvfb-run.TSjq3t’ ‘~/tmp/scratch/xvfb-run.UgRulC’   ‘~/tmp/scratch/xvfb-run.Uws56x’ ‘~/tmp/scratch/xvfb-run.ViLRyL’   ‘~/tmp/scratch/xvfb-run.VvZClO’ ‘~/tmp/scratch/xvfb-run.XInz5M’   ‘~/tmp/scratch/xvfb-run.XTp7M6’ ‘~/tmp/scratch/xvfb-run.Xf6GLO’   ‘~/tmp/scratch/xvfb-run.XpKZrp’ ‘~/tmp/scratch/xvfb-run.aD43Cq’   ‘~/tmp/scratch/xvfb-run.cgdJEJ’ ‘~/tmp/scratch/xvfb-run.dCdWzQ’   ‘~/tmp/scratch/xvfb-run.drtumo’ ‘~/tmp/scratch/xvfb-run.dt2Pp9’   ‘~/tmp/scratch/xvfb-run.g2o5FC’ ‘~/tmp/scratch/xvfb-run.gRYEJP’   ‘~/tmp/scratch/xvfb-run.ihZklI’ ‘~/tmp/scratch/xvfb-run.lZiL3E’   ‘~/tmp/scratch/xvfb-run.m3SRGW’ ‘~/tmp/scratch/xvfb-run.oofisP’   ‘~/tmp/scratch/xvfb-run.pOsDcH’ ‘~/tmp/scratch/xvfb-run.pQsNtt’   ‘~/tmp/scratch/xvfb-run.qNgKlv’ ‘~/tmp/scratch/xvfb-run.sTIudU’   ‘~/tmp/scratch/xvfb-run.scd6yR’ ‘~/tmp/scratch/xvfb-run.vVyJ9b’   ‘~/tmp/scratch/xvfb-run.w4c74f’ ‘~/tmp/scratch/xvfb-run.yipgO6’
• DONE

Status: 3 NOTEs