• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 15:01:11 UTC
• checking for file ‘geneExpressionFromGEO/DESCRIPTION’ ... OK
• this is package ‘geneExpressionFromGEO’ version ‘1.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘geneExpressionFromGEO’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/1s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp06racV’ ‘~/tmp/scratch/Rtmp1MgET0’   ‘~/tmp/scratch/Rtmp1fkaHZ’ ‘~/tmp/scratch/Rtmp24QivO’   ‘~/tmp/scratch/Rtmp2Z8hg0’ ‘~/tmp/scratch/Rtmp2cOEgz’   ‘~/tmp/scratch/Rtmp2gl4xq’ ‘~/tmp/scratch/Rtmp3pcxmo’   ‘~/tmp/scratch/Rtmp4CVc61’ ‘~/tmp/scratch/Rtmp5KSoEO’   ‘~/tmp/scratch/Rtmp5ktCKc’ ‘~/tmp/scratch/Rtmp6jVKUA’   ‘~/tmp/scratch/Rtmp6xnoLn’ ‘~/tmp/scratch/Rtmp71i2RZ’   ‘~/tmp/scratch/Rtmp7H8P6B’ ‘~/tmp/scratch/Rtmp9LeOLW’   ‘~/tmp/scratch/Rtmp9fCzMd’ ‘~/tmp/scratch/RtmpA5xhIw’   ‘~/tmp/scratch/RtmpAVD4Go’ ‘~/tmp/scratch/RtmpAWM0fB’   ‘~/tmp/scratch/RtmpCBaMXx’ ‘~/tmp/scratch/RtmpCkBPsC’   ‘~/tmp/scratch/RtmpE3Ryhm’ ‘~/tmp/scratch/RtmpEb5pMw’   ‘~/tmp/scratch/RtmpEoI5JF’ ‘~/tmp/scratch/RtmpEvOWuQ’   ‘~/tmp/scratch/RtmpF6pGaj’ ‘~/tmp/scratch/RtmpFH4prp’   ‘~/tmp/scratch/RtmpFmVw54’ ‘~/tmp/scratch/RtmpG1eR78’   ‘~/tmp/scratch/RtmpGPdZ8A’ ‘~/tmp/scratch/RtmpGhmB8c’   ‘~/tmp/scratch/RtmpHW4Jgv’ ‘~/tmp/scratch/RtmpIjruel’   ‘~/tmp/scratch/RtmpJ8YA7P’ ‘~/tmp/scratch/RtmpJoPVqb’   ‘~/tmp/scratch/RtmpKEt3NX’ ‘~/tmp/scratch/RtmpKWQfOA’   ‘~/tmp/scratch/RtmpLQsWXR’ ‘~/tmp/scratch/RtmpMPhuAI’   ‘~/tmp/scratch/RtmpMxFPcP’ ‘~/tmp/scratch/RtmpN8lHdT’   ‘~/tmp/scratch/RtmpNFvvo9’ ‘~/tmp/scratch/RtmpNQKVzC’   ‘~/tmp/scratch/RtmpNRs7gZ’ ‘~/tmp/scratch/RtmpO9A6WY’   ‘~/tmp/scratch/RtmpOtCMZG’ ‘~/tmp/scratch/RtmpOuzHjQ’   ‘~/tmp/scratch/RtmpPLzXEy’ ‘~/tmp/scratch/RtmpPPDJaN’   ‘~/tmp/scratch/RtmpQP2BHn’ ‘~/tmp/scratch/RtmpRyjvrT’   ‘~/tmp/scratch/RtmpS1YuWk’ ‘~/tmp/scratch/RtmpS7wfbS’   ‘~/tmp/scratch/RtmpSPZt2h’ ‘~/tmp/scratch/RtmpSQHUrD’   ‘~/tmp/scratch/RtmpSpMkQk’ ‘~/tmp/scratch/RtmpTzOaWP’   ‘~/tmp/scratch/RtmpUBUKW6’ ‘~/tmp/scratch/RtmpUF7k3Q’   ‘~/tmp/scratch/RtmpUqP94z’ ‘~/tmp/scratch/RtmpUu7EnR’   ‘~/tmp/scratch/RtmpV0dEbg’ ‘~/tmp/scratch/RtmpV57u62’   ‘~/tmp/scratch/RtmpVXkA3q’ ‘~/tmp/scratch/RtmpWP5WJL’   ‘~/tmp/scratch/RtmpWYGxia’ ‘~/tmp/scratch/RtmpWrJb71’   ‘~/tmp/scratch/RtmpX72BLE’ ‘~/tmp/scratch/RtmpXm4st5’   ‘~/tmp/scratch/RtmpYjhlus’ ‘~/tmp/scratch/RtmpZBs7Mu’   ‘~/tmp/scratch/RtmpZRZYtw’ ‘~/tmp/scratch/RtmpZgNCGw’   ‘~/tmp/scratch/RtmpaGR9Cg’ ‘~/tmp/scratch/RtmpaY6EsX’   ‘~/tmp/scratch/RtmpclZ095’ ‘~/tmp/scratch/RtmpdQeNDV’   ‘~/tmp/scratch/Rtmpexyf77’ ‘~/tmp/scratch/RtmpfQx3xe’   ‘~/tmp/scratch/RtmpgVsC5w’ ‘~/tmp/scratch/Rtmpgf0Hs2’   ‘~/tmp/scratch/Rtmpgp8gem’ ‘~/tmp/scratch/RtmpgpnVvS’   ‘~/tmp/scratch/RtmphoNpht’ ‘~/tmp/scratch/RtmpiXcTh0’   ‘~/tmp/scratch/RtmpidBp6q’ ‘~/tmp/scratch/RtmpijwKtv’   ‘~/tmp/scratch/Rtmpj8AteH’ ‘~/tmp/scratch/RtmpjZcoqq’   ‘~/tmp/scratch/RtmpjnKjOI’ ‘~/tmp/scratch/RtmpkYPmxW’   ‘~/tmp/scratch/RtmpkZmwBl’ ‘~/tmp/scratch/RtmplCu5aU’   ‘~/tmp/scratch/RtmpljoXB7’ ‘~/tmp/scratch/RtmplqsVEy’   ‘~/tmp/scratch/Rtmpm8sMX5’ ‘~/tmp/scratch/RtmpmNnc2z’   ‘~/tmp/scratch/RtmpnadVCT’ ‘~/tmp/scratch/RtmpnayUOu’   ‘~/tmp/scratch/RtmpoLivAK’ ‘~/tmp/scratch/RtmpoX8dY5’   ‘~/tmp/scratch/RtmpoZJZji’ ‘~/tmp/scratch/RtmprU1sE9’   ‘~/tmp/scratch/RtmprbaIHY’ ‘~/tmp/scratch/RtmpreXXyv’   ‘~/tmp/scratch/RtmptPi0pP’ ‘~/tmp/scratch/RtmpuEQsug’   ‘~/tmp/scratch/RtmpuUarJi’ ‘~/tmp/scratch/RtmpucjBGA’   ‘~/tmp/scratch/RtmpvA78nQ’ ‘~/tmp/scratch/RtmpxHjOV4’   ‘~/tmp/scratch/Rtmpxg2z5C’ ‘~/tmp/scratch/RtmpyQSdG1’   ‘~/tmp/scratch/RtmpyTYUaL’ ‘~/tmp/scratch/RtmpygHhti’   ‘~/tmp/scratch/Rtmpyjb1AB’ ‘~/tmp/scratch/Rtmpysv9ac’   ‘~/tmp/scratch/RtmpzFivf3’ ‘~/tmp/scratch/xvfb-run.28xakC’   ‘~/tmp/scratch/xvfb-run.3XGTDn’ ‘~/tmp/scratch/xvfb-run.6BwyC0’   ‘~/tmp/scratch/xvfb-run.6kmbXt’ ‘~/tmp/scratch/xvfb-run.7T5mAm’   ‘~/tmp/scratch/xvfb-run.7elmg5’ ‘~/tmp/scratch/xvfb-run.7w9z5O’   ‘~/tmp/scratch/xvfb-run.8PPYSi’ ‘~/tmp/scratch/xvfb-run.BLwxnG’   ‘~/tmp/scratch/xvfb-run.BRCCSk’ ‘~/tmp/scratch/xvfb-run.CWY8Q6’   ‘~/tmp/scratch/xvfb-run.CqASTC’ ‘~/tmp/scratch/xvfb-run.ETi6Nk’   ‘~/tmp/scratch/xvfb-run.HMj2VS’ ‘~/tmp/scratch/xvfb-run.Hj1XYj’   ‘~/tmp/scratch/xvfb-run.HjNJv0’ ‘~/tmp/scratch/xvfb-run.JUD5R0’   ‘~/tmp/scratch/xvfb-run.LsYpi2’ ‘~/tmp/scratch/xvfb-run.PzaQW9’   ‘~/tmp/scratch/xvfb-run.Sa0fzI’ ‘~/tmp/scratch/xvfb-run.Ta9gmh’   ‘~/tmp/scratch/xvfb-run.UMqNU0’ ‘~/tmp/scratch/xvfb-run.Uh4EsC’   ‘~/tmp/scratch/xvfb-run.UqpkBi’ ‘~/tmp/scratch/xvfb-run.WoQAtx’   ‘~/tmp/scratch/xvfb-run.Xqz0Wf’ ‘~/tmp/scratch/xvfb-run.Xy6sdG’   ‘~/tmp/scratch/xvfb-run.ZoHaWW’ ‘~/tmp/scratch/xvfb-run.bPqiha’   ‘~/tmp/scratch/xvfb-run.dHGp04’ ‘~/tmp/scratch/xvfb-run.eD6H8I’   ‘~/tmp/scratch/xvfb-run.eKTZxC’ ‘~/tmp/scratch/xvfb-run.fQMpMr’   ‘~/tmp/scratch/xvfb-run.iYFPwM’ ‘~/tmp/scratch/xvfb-run.j2qf22’   ‘~/tmp/scratch/xvfb-run.jSmNnB’ ‘~/tmp/scratch/xvfb-run.jgtF2Y’   ‘~/tmp/scratch/xvfb-run.nPiXZT’ ‘~/tmp/scratch/xvfb-run.nasRJS’   ‘~/tmp/scratch/xvfb-run.r7qXCj’ ‘~/tmp/scratch/xvfb-run.v5IKfw’   ‘~/tmp/scratch/xvfb-run.wCFDQJ’ ‘~/tmp/scratch/xvfb-run.ykZHqz’
• DONE

Status: 1 NOTE