- using R Under development (unstable) (2022-08-09 r82699)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘factorMerger/DESCRIPTION’ ... OK
- this is package ‘factorMerger’ version ‘0.4.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘factorMerger’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s/33s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/11s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [9s/14s] OK
Running ‘testthat.R’ [9s/13s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [32s/49s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘brca.Rmd’ using rmarkdown
Welcome to factorMerger 0.4.0!
Loading required package: forcats
Warning: `arrange_()` was deprecated in dplyr 0.7.0.
Please use `arrange()` instead.
See vignette('programming') for more help
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
Quitting from lines 51-56 (brca.Rmd)
Error: processing vignette ‘brca.Rmd’ failed with diagnostics:
‘list’ object cannot be coerced to type ‘double’
--- failed re-building ‘brca.Rmd’
--- re-building ‘factorMerger.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: `select_()` was deprecated in dplyr 0.7.0.
Please use `select()` instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: `group_by_()` was deprecated in dplyr 0.7.0.
Please use `group_by()` instead.
See vignette('programming') for more help
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
Warning in data(veteran) : data set 'veteran' not found
Quitting from lines 213-220 (factorMerger.Rmd)
Error: processing vignette ‘factorMerger.Rmd’ failed with diagnostics:
‘list’ object cannot be coerced to type ‘double’
--- failed re-building ‘factorMerger.Rmd’
--- re-building ‘pisa2012.Rmd’ using rmarkdown
Using country as id variables
Warning: Vectorized input to `element_text()` is not officially supported.
Results may be unexpected or may change in future versions of ggplot2.
--- finished re-building ‘pisa2012.Rmd’
SUMMARY: processing the following files failed:
‘brca.Rmd’ ‘factorMerger.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR