• using R Under development (unstable) (2026-05-11 r90046)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]     GNU Fortran (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-05-12 15:46:33 UTC
• checking for file ‘eyeris/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘eyeris’ version ‘3.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [3s/5s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘duckdb’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘eyeris’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/27s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [26s/31s] OK Examples with CPU (user + system) or elapsed time > 5s        user system elapsed epoch 4.878 0.144 5.601
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/14s] ERROR   Running ‘testthat.R’ [9s/13s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(eyeris)      eyeris v3.0.1 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶   Welcome! Type ?`eyeris` to get started.      ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      >   > test_check("eyeris")   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-chunked-processing-142.R   v [2026-05-12 17:48:30] [OKAY] Running eyeris::load_asc()   i [2026-05-12 17:48:30] [INFO] Processing block: block_1   v [2026-05-12 17:48:30] [OKAY] Running eyeris::deblink() for block_1   v [2026-05-12 17:48:30] [OKAY] Running eyeris::detransient() for block_1   v [2026-05-12 17:48:30] [OKAY] Running eyeris::interpolate() for block_1   v [2026-05-12 17:48:30] [OKAY] Running eyeris::lpfilt() for block_1   ! [2026-05-12 17:48:30] [WARN] Skipping eyeris::downsample() for block_1   ! [2026-05-12 17:48:30] [WARN] Skipping eyeris::bin() for block_1   ! [2026-05-12 17:48:30] [WARN] Skipping eyeris::detrend() for block_1   v [2026-05-12 17:48:30] [OKAY] Running eyeris::zscore() for block_1   i [2026-05-12 17:48:30] [INFO] Block processing summary:   i [2026-05-12 17:48:30] [INFO] block_1: OK (steps: 6, latest:   pupil_raw_deblink_detransient_interpolate_lpfilt_z)   v [2026-05-12 17:48:30] [OKAY] Running eyeris::summarize_confounds()   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parallel-database-21.R   v [2026-05-12 17:48:31] [OKAY] Running eyeris::load_asc()   i [2026-05-12 17:48:31] [INFO] Processing block: block_1   v [2026-05-12 17:48:31] [OKAY] Running eyeris::deblink() for block_1   v [2026-05-12 17:48:31] [OKAY] Running eyeris::detransient() for block_1   v [2026-05-12 17:48:31] [OKAY] Running eyeris::interpolate() for block_1   v [2026-05-12 17:48:31] [OKAY] Running eyeris::lpfilt() for block_1   ! [2026-05-12 17:48:31] [WARN] Skipping eyeris::downsample() for block_1   ! [2026-05-12 17:48:31] [WARN] Skipping eyeris::bin() for block_1   ! [2026-05-12 17:48:31] [WARN] Skipping eyeris::detrend() for block_1   v [2026-05-12 17:48:31] [OKAY] Running eyeris::zscore() for block_1   i [2026-05-12 17:48:31] [INFO] Block processing summary:   i [2026-05-12 17:48:31] [INFO] block_1: OK (steps: 6, latest:   pupil_raw_deblink_detransient_interpolate_lpfilt_z)   v [2026-05-12 17:48:31] [OKAY] Running eyeris::summarize_confounds()   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parallel-database-42.R   v [2026-05-12 17:48:31] [OKAY] Running eyeris::load_asc()   i [2026-05-12 17:48:31] [INFO] Processing block: block_1   v [2026-05-12 17:48:31] [OKAY] Running eyeris::deblink() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::detransient() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::interpolate() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::lpfilt() for block_1   ! [2026-05-12 17:48:32] [WARN] Skipping eyeris::downsample() for block_1   ! [2026-05-12 17:48:32] [WARN] Skipping eyeris::bin() for block_1   ! [2026-05-12 17:48:32] [WARN] Skipping eyeris::detrend() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::zscore() for block_1   i [2026-05-12 17:48:32] [INFO] Block processing summary:   i [2026-05-12 17:48:32] [INFO] block_1: OK (steps: 6, latest:   pupil_raw_deblink_detransient_interpolate_lpfilt_z)   v [2026-05-12 17:48:32] [OKAY] Running eyeris::summarize_confounds()   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parallel-database-62.R   v [2026-05-12 17:48:32] [OKAY] Running eyeris::load_asc()   i [2026-05-12 17:48:32] [INFO] Processing block: block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::deblink() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::detransient() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::interpolate() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::lpfilt() for block_1   ! [2026-05-12 17:48:32] [WARN] Skipping eyeris::downsample() for block_1   ! [2026-05-12 17:48:32] [WARN] Skipping eyeris::bin() for block_1   ! [2026-05-12 17:48:32] [WARN] Skipping eyeris::detrend() for block_1   v [2026-05-12 17:48:32] [OKAY] Running eyeris::zscore() for block_1   i [2026-05-12 17:48:32] [INFO] Block processing summary:   i [2026-05-12 17:48:32] [INFO] block_1: OK (steps: 6, latest:   pupil_raw_deblink_detransient_interpolate_lpfilt_z)   v [2026-05-12 17:48:32] [OKAY] Running eyeris::summarize_confounds()   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parallel-database-82.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parallel-database-91.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parallel-database-111.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parquet-split-15.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parquet-split-100.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parquet-split-171.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parquet-split-231.R   ** DuckDB not found. Database features are disabled.      => To install DuckDB:     - macOS: install.packages('duckdb', type = 'binary')     - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)              or install.packages('duckdb') if binaries are available     - Windows: install.packages('duckdb')      Once installed, restart R and reload eyeris to enable database storage   (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).      Saving _problems/test-parquet-split-283.R   v [2026-05-12 17:48:34] [OKAY] Running eyeris::load_asc()   i [2026-05-12 17:48:35] [INFO] Processing block: block_1   v [2026-05-12 17:48:35] [OKAY] Running eyeris::deblink() for block_1   v [2026-05-12 17:48:35] [OKAY] Running eyeris::detransient() for block_1   v [2026-05-12 17:48:35] [OKAY] Running eyeris::interpolate() for block_1   v [2026-05-12 17:48:35] [OKAY] Running eyeris::lpfilt() for block_1   ! [2026-05-12 17:48:35] [WARN] Skipping eyeris::downsample() for block_1   ! [2026-05-12 17:48:35] [WARN] Skipping eyeris::bin() for block_1   ! [2026-05-12 17:48:35] [WARN] Skipping eyeris::detrend() for block_1   v [2026-05-12 17:48:35] [OKAY] Running eyeris::zscore() for block_1   i [2026-05-12 17:48:35] [INFO] Block processing summary:   i [2026-05-12 17:48:35] [INFO] block_1: OK (steps: 6, latest:   pupil_raw_deblink_detransient_interpolate_lpfilt_z)   v [2026-05-12 17:48:35] [OKAY] Running eyeris::summarize_confounds()   v [2026-05-12 17:48:36] [OKAY] Running eyeris::load_asc()   i [2026-05-12 17:48:36] [INFO] Binocular data detected. Processing average   mode.   i [2026-05-12 17:48:36] [INFO] Processing block: block_1   v [2026-05-12 17:48:36] [OKAY] Running eyeris::deblink() for block_1   v [2026-05-12 17:48:36] [OKAY] Running eyeris::detransient() for block_1   v [2026-05-12 17:48:36] [OKAY] Running eyeris::interpolate() for block_1   ! [2026-05-12 17:48:36] [WARN] No NAs detected in pupil data... Skipping   interpolation!   v [2026-05-12 17:48:36] [OKAY] Running eyeris::lpfilt() for block_1   ! [2026-05-12 17:48:36] [WARN] Skipping eyeris::downsample() for block_1   ! [2026-05-12 17:48:36] [WARN] Skipping eyeris::bin() for block_1   ! [2026-05-12 17:48:36] [WARN] Skipping eyeris::detrend() for block_1   v [2026-05-12 17:48:36] [OKAY] Running eyeris::zscore() for block_1   i [2026-05-12 17:48:36] [INFO] Block processing summary:   i [2026-05-12 17:48:36] [INFO] block_1: OK (steps: 6, latest:   pupil_raw_deblink_detransient_interpolate_lpfilt_z)   v [2026-05-12 17:48:36] [OKAY] Running eyeris::summarize_confounds()   [ FAIL 12 | WARN 0 | SKIP 6 | PASS 33 ]      ══ Skipped tests (6) ═══════════════════════════════════════════════════════════   • {duckdb} is not installed (1): 'test-database.R:1:1'   • {duckdb} is not installed. (5): 'test-chunked-processing.R:3:3',     'test-chunked-processing.R:107:3', 'test-chunked-processing.R:159:3',     'test-chunked-processing.R:208:3', 'test-chunked-processing.R:340:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-chunked-processing.R:136:3'): eyeris_db_to_chunked_files validates inputs correctly ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. ├─testthat::expect_error(...) at test-chunked-processing.R:136:3    2. │ └─testthat:::expect_condition_matching_(...)    3. │ └─testthat:::quasi_capture(...)    4. │ ├─testthat (local) .capture(...)    5. │ │ └─base::withCallingHandlers(...)    6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    7. └─eyeris::eyeris_db_to_chunked_files(...)    8. └─eyeris:::log_error(...)   ── Failure ('test-parallel-database.R:9:5'): manual parallel processing flag enables temporary databases ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. ├─withr::with_envvar(...) at test-parallel-database.R:4:3    2. │ └─base::force(code)    3. └─testthat::expect_no_error(...) at test-parallel-database.R:9:5   ── Failure ('test-parallel-database.R:31:5'): SLURM environment variables are detected for parallel processing ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3    2. │ └─base::force(code)    3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5   ── Failure ('test-parallel-database.R:51:5'): PBS environment variables are detected for parallel processing ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3    2. │ └─base::force(code)    3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5   ── Failure ('test-parallel-database.R:70:3'): normal database operation works without parallel processing ──   Expected `{ ... }` not to throw any errors.   Actually got a <simpleError> with message:     formal argument "verbose" matched by multiple actual arguments   ── Error ('test-parallel-database.R:87:3'): temporary database creation works ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris:::create_temp_eyeris_database(...) at test-parallel-database.R:87:3    2. └─eyeris:::log_error(...)   ── Error ('test-parallel-database.R:107:3'): temporary database merging works ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris:::create_temp_eyeris_database(...) at test-parallel-database.R:107:3    2. └─eyeris:::log_error(...)   ── Error ('test-parquet-split.R:11:3'): eyeris_db_to_parquet creates correctly named files and folders ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:11:3    2. └─eyeris:::log_error(...)   ── Error ('test-parquet-split.R:96:3'): read_eyeris_parquet correctly reads back split data ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:96:3    2. └─eyeris:::log_error(...)   ── Error ('test-parquet-split.R:167:3'): eyeris_db_to_parquet handles file size constraints ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:167:3    2. └─eyeris:::log_error(...)   ── Error ('test-parquet-split.R:227:3'): eyeris_db_to_parquet handles empty database gracefully ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:227:3    2. └─eyeris:::log_error(...)   ── Error ('test-parquet-split.R:279:5'): read_eyeris_parquet works with db_name parameter ──   Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments   Backtrace:       ▆    1. └─eyeris::read_eyeris_parquet(...) at test-parquet-split.R:279:5    2. └─eyeris:::log_error(...)      [ FAIL 12 | WARN 0 | SKIP 6 | PASS 33 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [19s/26s] OK
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [6s/9s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR