• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:38:07 UTC
• checking for file ‘epigrowthfit/DESCRIPTION’ ... OK
• this is package ‘epigrowthfit’ version ‘0.15.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘epigrowthfit’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/23s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [12s/14s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [216s/284s] OK   Running ‘coef.R’ [3s/4s]   Running ‘confint.R’ [16s/26s]   Running ‘datetime.R’ [1s/2s]   Running ‘egf.R’ [3s/3s]   Running ‘egf_enum.R’ [2s/2s]   Running ‘egf_eval.R’ [1s/2s]   Running ‘egf_examples_day_of_week.R’ [2s/2s]   Running ‘egf_examples_excess.R’ [2s/2s]   Running ‘egf_examples_fixed.R’ [2s/2s]   Running ‘egf_examples_random.R’ [32s/45s]   Running ‘egf_link.R’ [1s/2s]   Running ‘egf_misc.R’ [4s/4s]   Running ‘egf_options.R’ [2s/2s]   Running ‘egf_utils.R’ [3s/4s]   Running ‘epidemic.R’ [1s/3s]   Running ‘extract.R’ [3s/5s]   Running ‘fitted.R’ [3s/4s]   Running ‘gi.R’ [2s/2s]   Running ‘include.R’ [114s/136s]   Running ‘language.R’ [1s/1s]   Running ‘prior.R’ [1s/1s]   Running ‘profile.R’ [10s/20s]   Running ‘summary.R’ [3s/4s]   Running ‘utils.R’ [2s/2s]   Running ‘validity.R’ [1s/2s]   Running ‘zzz.R’ [1s/2s]
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Cn5HE’ ‘~/tmp/scratch/Rtmp0Hv1ri’   ‘~/tmp/scratch/Rtmp0Qx2PT’ ‘~/tmp/scratch/Rtmp1LUzRB’   ‘~/tmp/scratch/Rtmp1h3qXQ’ ‘~/tmp/scratch/Rtmp2BemZf’   ‘~/tmp/scratch/Rtmp2ILoA4’ ‘~/tmp/scratch/Rtmp2Qf0Uu’   ‘~/tmp/scratch/Rtmp2VYSRe’ ‘~/tmp/scratch/Rtmp2WAK4r’   ‘~/tmp/scratch/Rtmp2cZUAR’ ‘~/tmp/scratch/Rtmp31fNnq’   ‘~/tmp/scratch/Rtmp3IEZgl’ ‘~/tmp/scratch/Rtmp3Uzxnt’   ‘~/tmp/scratch/Rtmp3VagF3’ ‘~/tmp/scratch/Rtmp3phAYH’   ‘~/tmp/scratch/Rtmp4B8YC7’ ‘~/tmp/scratch/Rtmp4XYdUI’   ‘~/tmp/scratch/Rtmp4ZlUsu’ ‘~/tmp/scratch/Rtmp4ycgM4’   ‘~/tmp/scratch/Rtmp5FRni4’ ‘~/tmp/scratch/Rtmp5auIDH’   ‘~/tmp/scratch/Rtmp62g0P2’ ‘~/tmp/scratch/Rtmp6FGzKC’   ‘~/tmp/scratch/Rtmp6LGC86’ ‘~/tmp/scratch/Rtmp79iYPF’   ‘~/tmp/scratch/Rtmp875cRd’ ‘~/tmp/scratch/Rtmp8JmsXT’   ‘~/tmp/scratch/Rtmp8NMLtu’ ‘~/tmp/scratch/Rtmp8aT1Jd’   ‘~/tmp/scratch/Rtmp8kZgCr’ ‘~/tmp/scratch/Rtmp8ySpIR’   ‘~/tmp/scratch/Rtmp9QyFP1’ ‘~/tmp/scratch/Rtmp9esLNN’   ‘~/tmp/scratch/Rtmp9l8PqC’ ‘~/tmp/scratch/Rtmp9uiG1u’   ‘~/tmp/scratch/RtmpABWtGQ’ ‘~/tmp/scratch/RtmpAKYRrv’   ‘~/tmp/scratch/RtmpAze3Oz’ ‘~/tmp/scratch/RtmpBgYD9M’   ‘~/tmp/scratch/RtmpBvPVue’ ‘~/tmp/scratch/RtmpBxFk12’   ‘~/tmp/scratch/RtmpEOVW8P’ ‘~/tmp/scratch/RtmpERZQuI’   ‘~/tmp/scratch/RtmpEgyAvn’ ‘~/tmp/scratch/RtmpExl57u’   ‘~/tmp/scratch/RtmpFCzQo6’ ‘~/tmp/scratch/RtmpFpoAja’   ‘~/tmp/scratch/RtmpGdNSWh’ ‘~/tmp/scratch/RtmpGt9rIn’   ‘~/tmp/scratch/RtmpHOc7dF’ ‘~/tmp/scratch/RtmpHl9RBi’   ‘~/tmp/scratch/RtmpIRSkaN’ ‘~/tmp/scratch/RtmpJd9gET’   ‘~/tmp/scratch/RtmpKLsN37’ ‘~/tmp/scratch/RtmpKTUReP’   ‘~/tmp/scratch/RtmpKweulY’ ‘~/tmp/scratch/RtmpKycpHu’   ‘~/tmp/scratch/RtmpL3TJpl’ ‘~/tmp/scratch/RtmpLJEgt8’   ‘~/tmp/scratch/RtmpLgewKu’ ‘~/tmp/scratch/RtmpLuqk1w’   ‘~/tmp/scratch/RtmpLvryU2’ ‘~/tmp/scratch/RtmpMXc6a9’   ‘~/tmp/scratch/RtmpMYPkeH’ ‘~/tmp/scratch/RtmpMiR5X4’   ‘~/tmp/scratch/RtmpMqKV0Y’ ‘~/tmp/scratch/RtmpMtn96A’   ‘~/tmp/scratch/RtmpNFEwLe’ ‘~/tmp/scratch/RtmpNdJUi3’   ‘~/tmp/scratch/RtmpNnKg1n’ ‘~/tmp/scratch/RtmpNndy6U’   ‘~/tmp/scratch/RtmpO0GIps’ ‘~/tmp/scratch/RtmpOJzVks’   ‘~/tmp/scratch/RtmpOLPtu6’ ‘~/tmp/scratch/RtmpOeT5y8’   ‘~/tmp/scratch/RtmpOz1eA6’ ‘~/tmp/scratch/RtmpP3PfXA’   ‘~/tmp/scratch/RtmpPEz6w3’ ‘~/tmp/scratch/RtmpPk0ynS’   ‘~/tmp/scratch/RtmpQ1tf8S’ ‘~/tmp/scratch/RtmpR4G0Oo’   ‘~/tmp/scratch/RtmpRG8mhw’ ‘~/tmp/scratch/RtmpRIGF8I’   ‘~/tmp/scratch/RtmpRMJJVA’ ‘~/tmp/scratch/RtmpROU747’   ‘~/tmp/scratch/RtmpRlkNXO’ ‘~/tmp/scratch/RtmpRn0EpP’   ‘~/tmp/scratch/RtmpSUHJ7S’ ‘~/tmp/scratch/RtmpSUzKTj’   ‘~/tmp/scratch/RtmpTbuI66’ ‘~/tmp/scratch/RtmpU04Eoj’   ‘~/tmp/scratch/RtmpU2Tnod’ ‘~/tmp/scratch/RtmpU3uVmx’   ‘~/tmp/scratch/RtmpU8kDGq’ ‘~/tmp/scratch/RtmpUh2Cvm’   ‘~/tmp/scratch/RtmpUwM2rD’ ‘~/tmp/scratch/RtmpUzExPY’   ‘~/tmp/scratch/RtmpVY1Uis’ ‘~/tmp/scratch/RtmpVnHdhl’   ‘~/tmp/scratch/RtmpWJDgHQ’ ‘~/tmp/scratch/RtmpWQat2g’   ‘~/tmp/scratch/RtmpXu9Z5E’ ‘~/tmp/scratch/RtmpYGPa6O’   ‘~/tmp/scratch/RtmpYldvwD’ ‘~/tmp/scratch/RtmpZBhF16’   ‘~/tmp/scratch/RtmpZiRjgB’ ‘~/tmp/scratch/RtmpaUtFKe’   ‘~/tmp/scratch/RtmpaqbitL’ ‘~/tmp/scratch/RtmpbF43C7’   ‘~/tmp/scratch/RtmpbTqfHZ’ ‘~/tmp/scratch/RtmpbcLawH’   ‘~/tmp/scratch/Rtmpbu2vZF’ ‘~/tmp/scratch/Rtmpc1KiSU’   ‘~/tmp/scratch/RtmpcOGHam’ ‘~/tmp/scratch/RtmpdJXBeb’   ‘~/tmp/scratch/RtmpdZgrSz’ ‘~/tmp/scratch/Rtmpds5FNd’   ‘~/tmp/scratch/Rtmpe2bN08’ ‘~/tmp/scratch/Rtmpe2mQdh’   ‘~/tmp/scratch/RtmpebzKeT’ ‘~/tmp/scratch/Rtmpef5an2’   ‘~/tmp/scratch/Rtmpeq30zI’ ‘~/tmp/scratch/RtmpfVlJfH’   ‘~/tmp/scratch/RtmpgR87Fa’ ‘~/tmp/scratch/RtmpgcrV04’   ‘~/tmp/scratch/RtmpgfHz6c’ ‘~/tmp/scratch/RtmpgkSYGO’   ‘~/tmp/scratch/Rtmphn3Ro8’ ‘~/tmp/scratch/RtmphzF4Gi’   ‘~/tmp/scratch/Rtmpi2IVTE’ ‘~/tmp/scratch/Rtmpic6aap’   ‘~/tmp/scratch/Rtmpiea36X’ ‘~/tmp/scratch/Rtmpjfvf6P’   ‘~/tmp/scratch/RtmpjotD1T’ ‘~/tmp/scratch/RtmpjwmYr7’   ‘~/tmp/scratch/Rtmpk61qZF’ ‘~/tmp/scratch/RtmpkVf5by’   ‘~/tmp/scratch/RtmpkdaI4r’ ‘~/tmp/scratch/RtmpklzrRh’   ‘~/tmp/scratch/RtmpkrT1kg’ ‘~/tmp/scratch/RtmplkSjgy’   ‘~/tmp/scratch/RtmpmOkwYj’ ‘~/tmp/scratch/RtmpmVewDm’   ‘~/tmp/scratch/Rtmpms4vdI’ ‘~/tmp/scratch/RtmpnBQ7UI’   ‘~/tmp/scratch/RtmpnicrVQ’ ‘~/tmp/scratch/Rtmpnog4PQ’   ‘~/tmp/scratch/RtmpnvYXpJ’ ‘~/tmp/scratch/RtmpoQSUJ3’   ‘~/tmp/scratch/RtmpoTwHkz’ ‘~/tmp/scratch/RtmppEs8fl’   ‘~/tmp/scratch/RtmppQ5FMf’ ‘~/tmp/scratch/Rtmppbax4q’   ‘~/tmp/scratch/RtmppicAqb’ ‘~/tmp/scratch/RtmppqLPgu’   ‘~/tmp/scratch/RtmpqbeEZI’ ‘~/tmp/scratch/RtmpqgVu8j’   ‘~/tmp/scratch/RtmpqvSYwZ’ ‘~/tmp/scratch/RtmprOiY5o’   ‘~/tmp/scratch/RtmprTGFP3’ ‘~/tmp/scratch/RtmpruH2q6’   ‘~/tmp/scratch/RtmpsBqK0T’ ‘~/tmp/scratch/RtmpsG3x2s’   ‘~/tmp/scratch/RtmpsI05Nt’ ‘~/tmp/scratch/Rtmpsxoo5V’   ‘~/tmp/scratch/RtmptPCrvx’ ‘~/tmp/scratch/Rtmpu0FfeR’   ‘~/tmp/scratch/RtmpueUkU7’ ‘~/tmp/scratch/Rtmpvg8ezC’   ‘~/tmp/scratch/RtmpvhhoNz’ ‘~/tmp/scratch/Rtmpvvlujp’   ‘~/tmp/scratch/Rtmpx4yOda’ ‘~/tmp/scratch/RtmpxOI3Yj’   ‘~/tmp/scratch/RtmpxwVR5P’ ‘~/tmp/scratch/RtmpyF6lJA’   ‘~/tmp/scratch/Rtmpyy1CNh’ ‘~/tmp/scratch/RtmpzRIE8r’   ‘~/tmp/scratch/RtmpzWau9W’ ‘~/tmp/scratch/RtmpzwpVdz’   ‘~/tmp/scratch/xvfb-run.0TaSWQ’ ‘~/tmp/scratch/xvfb-run.0ZxfNl’   ‘~/tmp/scratch/xvfb-run.0p3fAl’ ‘~/tmp/scratch/xvfb-run.0ygrh2’   ‘~/tmp/scratch/xvfb-run.14bbcQ’ ‘~/tmp/scratch/xvfb-run.2mgRs9’   ‘~/tmp/scratch/xvfb-run.2revtr’ ‘~/tmp/scratch/xvfb-run.3FnXol’   ‘~/tmp/scratch/xvfb-run.3VEhFk’ ‘~/tmp/scratch/xvfb-run.42gnYh’   ‘~/tmp/scratch/xvfb-run.8uDbFz’ ‘~/tmp/scratch/xvfb-run.ABfAVB’   ‘~/tmp/scratch/xvfb-run.BcquDe’ ‘~/tmp/scratch/xvfb-run.CC9rYq’   ‘~/tmp/scratch/xvfb-run.COor9L’ ‘~/tmp/scratch/xvfb-run.CS8RXa’   ‘~/tmp/scratch/xvfb-run.EOtWXv’ ‘~/tmp/scratch/xvfb-run.EoX1wc’   ‘~/tmp/scratch/xvfb-run.FNX765’ ‘~/tmp/scratch/xvfb-run.FYCPWA’   ‘~/tmp/scratch/xvfb-run.GLLcQq’ ‘~/tmp/scratch/xvfb-run.GeoGDC’   ‘~/tmp/scratch/xvfb-run.HdbQJA’ ‘~/tmp/scratch/xvfb-run.HlY8k1’   ‘~/tmp/scratch/xvfb-run.IrJ8J6’ ‘~/tmp/scratch/xvfb-run.KSSzxn’   ‘~/tmp/scratch/xvfb-run.KxnfzH’ ‘~/tmp/scratch/xvfb-run.LHko92’   ‘~/tmp/scratch/xvfb-run.MAAgfr’ ‘~/tmp/scratch/xvfb-run.MgpSyB’   ‘~/tmp/scratch/xvfb-run.NUzJcm’ ‘~/tmp/scratch/xvfb-run.O38phR’   ‘~/tmp/scratch/xvfb-run.ODlYEA’ ‘~/tmp/scratch/xvfb-run.Pxy6cC’   ‘~/tmp/scratch/xvfb-run.QVHx5h’ ‘~/tmp/scratch/xvfb-run.QZOzmo’   ‘~/tmp/scratch/xvfb-run.RQZhZ6’ ‘~/tmp/scratch/xvfb-run.RoLwEU’   ‘~/tmp/scratch/xvfb-run.SEJGOj’ ‘~/tmp/scratch/xvfb-run.TFOhK9’   ‘~/tmp/scratch/xvfb-run.UXO4XB’ ‘~/tmp/scratch/xvfb-run.Uqeixy’   ‘~/tmp/scratch/xvfb-run.Wv5qnO’ ‘~/tmp/scratch/xvfb-run.Y4y3Eq’   ‘~/tmp/scratch/xvfb-run.a0gSDo’ ‘~/tmp/scratch/xvfb-run.cYPUEe’   ‘~/tmp/scratch/xvfb-run.cg2yOH’ ‘~/tmp/scratch/xvfb-run.dAYlMt’   ‘~/tmp/scratch/xvfb-run.dOHwux’ ‘~/tmp/scratch/xvfb-run.dlKg8t’   ‘~/tmp/scratch/xvfb-run.eCmP5Q’ ‘~/tmp/scratch/xvfb-run.eLGmaw’   ‘~/tmp/scratch/xvfb-run.f039XO’ ‘~/tmp/scratch/xvfb-run.f973uk’   ‘~/tmp/scratch/xvfb-run.fEWXuD’ ‘~/tmp/scratch/xvfb-run.fdTeCp’   ‘~/tmp/scratch/xvfb-run.fojWgT’ ‘~/tmp/scratch/xvfb-run.g0LS2w’   ‘~/tmp/scratch/xvfb-run.g2GNwX’ ‘~/tmp/scratch/xvfb-run.gTCctt’   ‘~/tmp/scratch/xvfb-run.hNhMW0’ ‘~/tmp/scratch/xvfb-run.hn8lKN’   ‘~/tmp/scratch/xvfb-run.j8uidK’ ‘~/tmp/scratch/xvfb-run.l0ZOBZ’   ‘~/tmp/scratch/xvfb-run.lP98ae’ ‘~/tmp/scratch/xvfb-run.oErtS5’   ‘~/tmp/scratch/xvfb-run.oPD9P8’ ‘~/tmp/scratch/xvfb-run.oQWt4X’   ‘~/tmp/scratch/xvfb-run.qUkiyP’ ‘~/tmp/scratch/xvfb-run.s753RA’   ‘~/tmp/scratch/xvfb-run.tXvtiw’ ‘~/tmp/scratch/xvfb-run.u5rkwh’   ‘~/tmp/scratch/xvfb-run.ustc3z’ ‘~/tmp/scratch/xvfb-run.vrjJQR’   ‘~/tmp/scratch/xvfb-run.wznV0B’ ‘~/tmp/scratch/xvfb-run.x8BOHM’   ‘~/tmp/scratch/xvfb-run.xRGUFs’ ‘~/tmp/scratch/xvfb-run.yXuOxx’   ‘~/tmp/scratch/xvfb-run.zBcc0h’ ‘~/tmp/scratch/xvfb-run.zMKTIb’   ‘~/tmp/scratch/xvfb-run.zY9fCr’ ‘~/tmp/scratch/xvfb-run.zgZuqQ’
• DONE

Status: 1 NOTE