• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘edeaR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘edeaR’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘edeaR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/25s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/10s] ERROR   Running ‘testthat.R’ [10s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(edeaR)      Attaching package: 'edeaR'      The following object is masked from 'package:base':          setdiff      >   > test_check("edeaR")   Saving _problems/test_idle_time-9.R   Saving _problems/test_idle_time-28.R   Saving _problems/test_idle_time-48.R   Saving _problems/test_idle_time-69.R   Saving _problems/test_idle_time-90.R   Saving _problems/test_idle_time-114.R   Saving _problems/test_idle_time-136.R   Saving _problems/test_idle_time-159.R   [ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_idle_time.R:8:3'): test idle_time attr 'units' set when arg 'units' = 'auto' ──   Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. ├─patients %>% idle_time(level = "log", units = "auto") at test_idle_time.R:8:3    2. ├─edeaR::idle_time(., level = "log", units = "auto")    3. └─edeaR:::idle_time.eventlog(., level = "log", units = "auto")    4. └─edeaR (local) FUN(log = log, units = units)    5. └─edeaR:::idle_time_case(log, units)    6. ├─...[]    7. └─data.table:::`[.data.table`(...)   ── Error ('test_idle_time.R:27:3'): test idle_time on eventlog with arg 'level' = 'log' ──   Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. ├─patients %>% idle_time(level = "log", units = "mins") at test_idle_time.R:27:3    2. ├─edeaR::idle_time(., level = "log", units = "mins")    3. └─edeaR:::idle_time.eventlog(., level = "log", units = "mins")    4. └─edeaR (local) FUN(log = log, units = units)    5. └─edeaR:::idle_time_case(log, units)    6. ├─...[]    7. └─data.table:::`[.data.table`(...)   ── Error ('test_idle_time.R:47:3'): test idle_time on eventlog with arg 'level' = 'trace' ──   Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. ├─patients %>% idle_time(level = "trace", units = "mins") at test_idle_time.R:47:3    2. ├─edeaR::idle_time(., level = "trace", units = "mins")    3. ├─edeaR:::idle_time.eventlog(., level = "trace", units = "mins")    4. │ └─edeaR (local) FUN(log = log, units = units)    5. │ └─log %>% idle_time_case(units = units)    6. └─edeaR:::idle_time_case(., units = units)    7. ├─...[]    8. └─data.table:::`[.data.table`(...)   ── Error ('test_idle_time.R:68:3'): test idle_time on eventlog with arg 'level' = 'case' ──   Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. ├─patients %>% idle_time(level = "case", units = "mins") at test_idle_time.R:68:3    2. ├─edeaR::idle_time(., level = "case", units = "mins")    3. └─edeaR:::idle_time.eventlog(., level = "case", units = "mins")    4. └─edeaR (local) FUN(log = log, units = units)    5. ├─...[]    6. └─data.table:::`[.data.table`(...)   ── Error ('test_idle_time.R:89:3'): test idle_time on eventlog with arg 'level' = 'resource' ──   Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "RID")`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. ├─patients %>% idle_time(level = "resource", units = "mins") at test_idle_time.R:89:3    2. ├─edeaR::idle_time(., level = "resource", units = "mins")    3. └─edeaR:::idle_time.eventlog(., level = "resource", units = "mins")    4. └─edeaR (local) FUN(log = log, units = units)    5. ├─...[]    6. └─data.table:::`[.data.table`(...)   ── Error ('test_idle_time.R:113:3'): test idle_time attr 'units' set when arg 'units' = 'auto' on grouped_eventlog ──   <dplyr:::mutate_error/rlang_error/error/condition>   Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.   Caused by error in `map()`:   i In index: 1.   Caused by error in `[.data.table`:   ! attempt access index 8/8 in VECTOR_ELT   ── Error ('test_idle_time.R:135:3'): test idle_time on activitylog for attr 'units' set when arg 'units' = 'auto' ──   Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. ├─patients_act %>% idle_time(level = "log", units = "auto") at test_idle_time.R:135:3    2. ├─edeaR::idle_time(., level = "log", units = "auto")    3. └─edeaR:::idle_time.activitylog(., level = "log", units = "auto")    4. └─edeaR:::idle_time.eventlog(...)    5. └─edeaR (local) FUN(log = log, units = units)    6. └─edeaR:::idle_time_case(log, units)    7. ├─...[]    8. └─data.table:::`[.data.table`(...)   ── Error ('test_idle_time.R:158:3'): test idle_time on grouped_activitylog for attr 'units' set when arg 'units' = 'auto' ──   <dplyr:::mutate_error/rlang_error/error/condition>   Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.   Caused by error in `map()`:   i In index: 1.   Caused by error in `[.data.table`:   ! attempt access index 8/8 in VECTOR_ELT      [ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [27s/33s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘filters.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘filters.Rmd’ --- re-building ‘metrics.Rmd’ using rmarkdown Quitting from metrics.Rmd:33-36 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 8/8 in VECTOR_ELT --- Backtrace:     ▆  1. ├─patients %>% idle_time("resource", units = "days")  2. ├─edeaR::idle_time(., "resource", units = "days")  3. └─edeaR:::idle_time.eventlog(., "resource", units = "days")  4. └─edeaR (local) FUN(log = log, units = units)  5. ├─...[]  6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'metrics.Rmd' failed with diagnostics: attempt access index 8/8 in VECTOR_ELT --- failed re-building ‘metrics.Rmd’ --- re-building ‘queue.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘queue.Rmd’ --- re-building ‘work_schedules.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘work_schedules.Rmd’ SUMMARY: processing the following file failed:   ‘metrics.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [6s/8s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs