* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘dti’ ...
** package ‘dti’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDltGtK/R.INSTALL12afaa1da6c80b/dti/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Converter.cpp -o Converter.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Fiber.cpp -o Fiber.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Fibertracking.cpp -o Fibertracking.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c LawsonHansonnnls.f -o LawsonHansonnnls.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TrackingInterface.cpp -o TrackingInterface.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Vector.cpp -o Vector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c VectorList.cpp -o VectorList.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Voxel.cpp -o Voxel.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c aniso.f -o aniso.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c awsvar.f -o awsvar.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bessel.c -o bessel.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bmixtensorpl.c -o bmixtensorpl.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dtifull.f -o dtifull.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dtinraw2.f -o dtinraw2.o
dtinraw2.f:102:41:
102 | double precision x(10000),fw(10000)
| 1
Warning: Array ‘fw’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
dtinraw2.f:102:31:
102 | double precision x(10000),fw(10000)
| 1
Warning: Array ‘x’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c fibers.f -o fibers.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c misc.f -o misc.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mixtenbv.f -o mixtenbv.o
mixtenbv.f:549:72:
549 | wi(1,i)=w0
| ^
Warning: ‘w0’ may be used uninitialized [-Wmaybe-uninitialized]
mixtenbv.f:491:31:
491 | 1 z1,dng,albv,lbv,w0
| ^
note: ‘w0’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mixtens.f -o mixtens.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mixtensl.f -o mixtensl.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mixtensorpl.c -o mixtensorpl.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c nlrdtirg.f -o nlrdtirg.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c rice.f -o rice.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c show3d.f -o show3d.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c smse3.f -o smse3.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c tensor.f -o tensor.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tensorc.c -o tensorc.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o dti.so Converter.o Fiber.o Fibertracking.o LawsonHansonnnls.o TrackingInterface.o Vector.o VectorList.o Voxel.o aniso.o awsvar.o bessel.o bmixtensorpl.o dtifull.o dtinraw2.o fibers.o init.o misc.o mixtenbv.o mixtens.o mixtensl.o mixtensorpl.o nlrdtirg.o rice.o show3d.o smse3.o tensor.o tensorc.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDltGtK/R.INSTALL12afaa1da6c80b/dti/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDltGtK/R.INSTALL12afaa1da6c80b/dti/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDltGtK/R.INSTALL12afaa1da6c80b/dti/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-dti/00new/dti/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dti)