• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:28:29 UTC
• checking for file ‘dsb/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘dsb’ version ‘2.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘dsb’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/9s] OK Examples with CPU (user + system) or elapsed time > 5s                      user system elapsed DSBNormalizeProtein 3.514 0.164 5.21
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [6s/7s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [5s/6s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [54s/66s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0DWKx2’ ‘~/tmp/scratch/Rtmp0YiEt0’   ‘~/tmp/scratch/Rtmp0khYsU’ ‘~/tmp/scratch/Rtmp0tKpmS’   ‘~/tmp/scratch/Rtmp1YQsNo’ ‘~/tmp/scratch/Rtmp1qKA1P’   ‘~/tmp/scratch/Rtmp1rPjJm’ ‘~/tmp/scratch/Rtmp1seyDu’   ‘~/tmp/scratch/Rtmp23TVOO’ ‘~/tmp/scratch/Rtmp2PSPq6’   ‘~/tmp/scratch/Rtmp2f4zIl’ ‘~/tmp/scratch/Rtmp2mMkop’   ‘~/tmp/scratch/Rtmp2uOCSP’ ‘~/tmp/scratch/Rtmp3I8sTU’   ‘~/tmp/scratch/Rtmp3uDQbU’ ‘~/tmp/scratch/Rtmp4FFBX6’   ‘~/tmp/scratch/Rtmp5WkM8S’ ‘~/tmp/scratch/Rtmp5ntq2p’   ‘~/tmp/scratch/Rtmp60w9r8’ ‘~/tmp/scratch/Rtmp6VZmiZ’   ‘~/tmp/scratch/Rtmp6XlYfh’ ‘~/tmp/scratch/Rtmp6mPHXa’   ‘~/tmp/scratch/Rtmp70f3S6’ ‘~/tmp/scratch/Rtmp7hsvVd’   ‘~/tmp/scratch/Rtmp7oabsl’ ‘~/tmp/scratch/Rtmp7tOgw8’   ‘~/tmp/scratch/Rtmp90SSzQ’ ‘~/tmp/scratch/Rtmp9oTfX2’   ‘~/tmp/scratch/RtmpAdkQXh’ ‘~/tmp/scratch/RtmpBGPjan’   ‘~/tmp/scratch/RtmpBUwAek’ ‘~/tmp/scratch/RtmpCH74GG’   ‘~/tmp/scratch/RtmpCknke1’ ‘~/tmp/scratch/RtmpDk6szj’   ‘~/tmp/scratch/RtmpE0zPqU’ ‘~/tmp/scratch/RtmpEBoAHm’   ‘~/tmp/scratch/RtmpErXxyn’ ‘~/tmp/scratch/RtmpFaOWax’   ‘~/tmp/scratch/RtmpGryJYu’ ‘~/tmp/scratch/RtmpHE4J11’   ‘~/tmp/scratch/RtmpHnu915’ ‘~/tmp/scratch/RtmpIMMY2w’   ‘~/tmp/scratch/RtmpJ3AQPq’ ‘~/tmp/scratch/RtmpJqW69r’   ‘~/tmp/scratch/RtmpKSMSc4’ ‘~/tmp/scratch/RtmpKvfqdX’   ‘~/tmp/scratch/RtmpLTlk06’ ‘~/tmp/scratch/RtmpMExajJ’   ‘~/tmp/scratch/RtmpMJotNq’ ‘~/tmp/scratch/RtmpMLuJZp’   ‘~/tmp/scratch/RtmpMyY7PC’ ‘~/tmp/scratch/RtmpN2BqIG’   ‘~/tmp/scratch/RtmpNimqkY’ ‘~/tmp/scratch/RtmpNxGSaH’   ‘~/tmp/scratch/RtmpO6G2P0’ ‘~/tmp/scratch/RtmpOQq2WS’   ‘~/tmp/scratch/RtmpOeCVZJ’ ‘~/tmp/scratch/RtmpOzIoDM’   ‘~/tmp/scratch/RtmpPtKiQN’ ‘~/tmp/scratch/RtmpQYgV3c’   ‘~/tmp/scratch/RtmpQoaM2s’ ‘~/tmp/scratch/RtmpRqN51F’   ‘~/tmp/scratch/RtmpS6x5gh’ ‘~/tmp/scratch/RtmpSY8R1B’   ‘~/tmp/scratch/RtmpSaRpSq’ ‘~/tmp/scratch/RtmpSlPJSN’   ‘~/tmp/scratch/RtmpSnonLY’ ‘~/tmp/scratch/RtmpSoF1m9’   ‘~/tmp/scratch/RtmpUQ6Arl’ ‘~/tmp/scratch/RtmpUh59C8’   ‘~/tmp/scratch/RtmpVFJnjf’ ‘~/tmp/scratch/RtmpVJdqzB’   ‘~/tmp/scratch/RtmpVlk2Lx’ ‘~/tmp/scratch/RtmpWNtGxJ’   ‘~/tmp/scratch/RtmpWmm5YP’ ‘~/tmp/scratch/RtmpWvmPo6’   ‘~/tmp/scratch/RtmpYGGoU6’ ‘~/tmp/scratch/RtmpYuWLPE’   ‘~/tmp/scratch/RtmpZytlxT’ ‘~/tmp/scratch/RtmpaDXQ6U’   ‘~/tmp/scratch/RtmpaKf61q’ ‘~/tmp/scratch/RtmpafAB5j’   ‘~/tmp/scratch/Rtmparbvi6’ ‘~/tmp/scratch/RtmpbWJUg1’   ‘~/tmp/scratch/Rtmpc801hN’ ‘~/tmp/scratch/RtmpcXPEk7’   ‘~/tmp/scratch/RtmpcgO2gx’ ‘~/tmp/scratch/RtmpctltxY’   ‘~/tmp/scratch/RtmpdG3cvi’ ‘~/tmp/scratch/Rtmpdf5s41’   ‘~/tmp/scratch/RtmpeWHS4r’ ‘~/tmp/scratch/RtmpeZYmLB’   ‘~/tmp/scratch/RtmpfnaGjK’ ‘~/tmp/scratch/RtmpfoxmE6’   ‘~/tmp/scratch/Rtmpg0ODAV’ ‘~/tmp/scratch/Rtmpg8LtSW’   ‘~/tmp/scratch/Rtmpg9mnEU’ ‘~/tmp/scratch/RtmpgCvLQv’   ‘~/tmp/scratch/RtmpgeU8xZ’ ‘~/tmp/scratch/RtmpgjnIEC’   ‘~/tmp/scratch/RtmpgmbPMd’ ‘~/tmp/scratch/RtmpgyiUAN’   ‘~/tmp/scratch/RtmphAkPF3’ ‘~/tmp/scratch/RtmphMct10’   ‘~/tmp/scratch/RtmphQwMnK’ ‘~/tmp/scratch/RtmphQy5CH’   ‘~/tmp/scratch/RtmphSwwTC’ ‘~/tmp/scratch/RtmpihVruI’   ‘~/tmp/scratch/RtmpjWm9wo’ ‘~/tmp/scratch/RtmpjZLPNj’   ‘~/tmp/scratch/Rtmpk9qmXY’ ‘~/tmp/scratch/RtmpkUbbNR’   ‘~/tmp/scratch/RtmpkUm6TX’ ‘~/tmp/scratch/RtmpkqQJgV’   ‘~/tmp/scratch/RtmplDlrQ1’ ‘~/tmp/scratch/RtmplQGJFI’   ‘~/tmp/scratch/Rtmplynj7a’ ‘~/tmp/scratch/RtmpmH28AJ’   ‘~/tmp/scratch/RtmpmPudt6’ ‘~/tmp/scratch/RtmpmWjKWD’   ‘~/tmp/scratch/RtmpmXAjqD’ ‘~/tmp/scratch/Rtmpmyf3bv’   ‘~/tmp/scratch/RtmpnHCacC’ ‘~/tmp/scratch/RtmpoNCEHM’   ‘~/tmp/scratch/RtmpoZBMah’ ‘~/tmp/scratch/Rtmpohybj3’   ‘~/tmp/scratch/Rtmpoi7Pww’ ‘~/tmp/scratch/RtmpoqPaT2’   ‘~/tmp/scratch/RtmppwbER8’ ‘~/tmp/scratch/Rtmpq3sI85’   ‘~/tmp/scratch/Rtmpqd6w36’ ‘~/tmp/scratch/RtmprGuIrR’   ‘~/tmp/scratch/RtmproEP6Z’ ‘~/tmp/scratch/RtmpsEEn7w’   ‘~/tmp/scratch/RtmpslvdRk’ ‘~/tmp/scratch/RtmptrniCY’   ‘~/tmp/scratch/RtmpuTP29z’ ‘~/tmp/scratch/RtmpvMxFeJ’   ‘~/tmp/scratch/Rtmpw3LGHi’ ‘~/tmp/scratch/RtmpwlMcsy’   ‘~/tmp/scratch/RtmpwpLcbz’ ‘~/tmp/scratch/RtmpxDLkyV’   ‘~/tmp/scratch/RtmpxQRWyF’ ‘~/tmp/scratch/RtmpyRf1EB’   ‘~/tmp/scratch/RtmpyhgeZN’ ‘~/tmp/scratch/RtmpzQFmqh’   ‘~/tmp/scratch/xvfb-run.1XGFsa’ ‘~/tmp/scratch/xvfb-run.3alXuz’   ‘~/tmp/scratch/xvfb-run.88Hyun’ ‘~/tmp/scratch/xvfb-run.8CwbfD’   ‘~/tmp/scratch/xvfb-run.8LuTEX’ ‘~/tmp/scratch/xvfb-run.8VJvbu’   ‘~/tmp/scratch/xvfb-run.BXpCGi’ ‘~/tmp/scratch/xvfb-run.DNtDsR’   ‘~/tmp/scratch/xvfb-run.EczJJr’ ‘~/tmp/scratch/xvfb-run.FgKdNR’   ‘~/tmp/scratch/xvfb-run.GcPABK’ ‘~/tmp/scratch/xvfb-run.Hr0RtF’   ‘~/tmp/scratch/xvfb-run.KH8TaU’ ‘~/tmp/scratch/xvfb-run.KWMEa0’   ‘~/tmp/scratch/xvfb-run.KtfzNX’ ‘~/tmp/scratch/xvfb-run.LuTheO’   ‘~/tmp/scratch/xvfb-run.MSrHrG’ ‘~/tmp/scratch/xvfb-run.Qp7lcL’   ‘~/tmp/scratch/xvfb-run.R9w9TB’ ‘~/tmp/scratch/xvfb-run.RPXsEF’   ‘~/tmp/scratch/xvfb-run.SmCfZD’ ‘~/tmp/scratch/xvfb-run.TPnAF0’   ‘~/tmp/scratch/xvfb-run.UjMMuz’ ‘~/tmp/scratch/xvfb-run.WJVTMa’   ‘~/tmp/scratch/xvfb-run.Y6NSJO’ ‘~/tmp/scratch/xvfb-run.Y8IdRq’   ‘~/tmp/scratch/xvfb-run.Yub2tR’ ‘~/tmp/scratch/xvfb-run.ZNkKX9’   ‘~/tmp/scratch/xvfb-run.Zxhf3e’ ‘~/tmp/scratch/xvfb-run.aXZW47’   ‘~/tmp/scratch/xvfb-run.cPe2aK’ ‘~/tmp/scratch/xvfb-run.cnl7mm’   ‘~/tmp/scratch/xvfb-run.dPfwNe’ ‘~/tmp/scratch/xvfb-run.dYSun2’   ‘~/tmp/scratch/xvfb-run.f5oo7i’ ‘~/tmp/scratch/xvfb-run.fOpD6i’   ‘~/tmp/scratch/xvfb-run.fWQJlE’ ‘~/tmp/scratch/xvfb-run.frSvh7’   ‘~/tmp/scratch/xvfb-run.gJlGt1’ ‘~/tmp/scratch/xvfb-run.jJRrLA’   ‘~/tmp/scratch/xvfb-run.jksmv3’ ‘~/tmp/scratch/xvfb-run.jmdMgc’   ‘~/tmp/scratch/xvfb-run.jurs5G’ ‘~/tmp/scratch/xvfb-run.lzXDkf’   ‘~/tmp/scratch/xvfb-run.mxAWL5’ ‘~/tmp/scratch/xvfb-run.nS1YLO’   ‘~/tmp/scratch/xvfb-run.oExOEr’ ‘~/tmp/scratch/xvfb-run.q461YR’   ‘~/tmp/scratch/xvfb-run.sBRoVh’ ‘~/tmp/scratch/xvfb-run.sGAu38’   ‘~/tmp/scratch/xvfb-run.sc2SvE’ ‘~/tmp/scratch/xvfb-run.tO5jPB’   ‘~/tmp/scratch/xvfb-run.v96gdN’ ‘~/tmp/scratch/xvfb-run.vVO9sn’   ‘~/tmp/scratch/xvfb-run.wnjap2’ ‘~/tmp/scratch/xvfb-run.x8neIH’   ‘~/tmp/scratch/xvfb-run.yArwrM’
• DONE

Status: 1 NOTE