Install log for 'dmrfit'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘dmrfit’ ...
** this is package ‘dmrfit’ version ‘0.1.0’
** package ‘dmrfit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplxgzXd/R.INSTALL26fef95933a549/dmrfit/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optimize.cpp -o optimize.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c priors.cpp -o priors.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampler-adacore.cpp -o sampler-adacore.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampler-core.cpp -o sampler-core.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampler-dmh.cpp -o sampler-dmh.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampler-exact.cpp -o sampler-exact.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampler-pseudo.cpp -o sampler-pseudo.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c samplers-utils.cpp -o samplers-utils.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -DARMA_DONT_USE_OPENMP -I. -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:439,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from utils.cpp:4:
In static member function ‘static void arma::memory::release(eT*) [with eT = const double]’,
    inlined from ‘arma::Mat<eT>::~Mat() [with eT = double]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:32:20,
    inlined from ‘arma::Mat<eT>::~Mat() [with eT = double]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:25:1,
    inlined from ‘arma::quasi_unwrap_default<arma::Glue<arma::Op<arma::subview_col<double>, arma::op_htrans>, arma::subview_col<double>, arma::glue_times> >::~quasi_unwrap_default()’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/unwrap.hpp:238:8,
    inlined from ‘arma::quasi_unwrap<arma::Glue<arma::Op<arma::subview_col<double>, arma::op_htrans>, arma::subview_col<double>, arma::glue_times> >::~quasi_unwrap()’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/unwrap.hpp:299:8,
    inlined from ‘static typename T1::elem_type arma::op_accu_mat::apply(const T1&) [with T1 = arma::Glue<arma::Op<arma::subview_col<double>, arma::op_htrans>, arma::subview_col<double>, arma::glue_times>]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/op_accu_meat.hpp:124:5,
    inlined from ‘auto arma::accu(const T1&, const typename enable_if<is_arma_type<T1>::value>::result*) [with T1 = Glue<Op<subview_col<double>, op_htrans>, subview_col<double>, glue_times>]’ at /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/fn_accu.hpp:34:28,
    inlined from ‘_Z17cpp_npseudologlikRKN4arma3ColIdEERKNS_3MatIdEERKjRKNS0_IjEERKbRKiRKdSI_SI_SI_._omp_fn.0’ at utils.cpp:309:31:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/memory.hpp:125:14: warning: ‘void free(void*)’ called on unallocated object ‘U’ [-Wfree-nonheap-object]
  125 |     std::free( (void *)(mem) );
      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:806:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/op_accu_meat.hpp: In function ‘_Z17cpp_npseudologlikRKN4arma3ColIdEERKNS_3MatIdEERKjRKNS0_IjEERKbRKiRKdSI_SI_SI_._omp_fn.0’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/op_accu_meat.hpp:121:28: note: declared here
  121 |     const quasi_unwrap<T1> U(X);
      |                            ^
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o dmrfit.so RcppExports.o optimize.o priors.o sampler-adacore.o sampler-core.o sampler-dmh.o sampler-exact.o sampler-pseudo.o samplers-utils.o utils.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplxgzXd/R.INSTALL26fef95933a549/dmrfit/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplxgzXd/R.INSTALL26fef95933a549/dmrfit/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplxgzXd/R.INSTALL26fef95933a549/dmrfit/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-dmrfit/00new/dmrfit/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dmrfit)