• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:23:07 UTC
• checking for file ‘diffusionMap/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘diffusionMap’ version ‘1.2.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘diffusionMap’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R   Author: ‘Joseph Richards [aut] (joeyrichar), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’   Authors@R: ‘Joseph Richards [aut] (github: joeyrichar), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [16s/20s] OK Examples with CPU (user + system) or elapsed time > 5s           user system elapsed adapreg.m 3.95 0.096 6.276
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0JCdsh’ ‘~/tmp/scratch/Rtmp0tt9xn’   ‘~/tmp/scratch/Rtmp142XQD’ ‘~/tmp/scratch/Rtmp1UDgWs’   ‘~/tmp/scratch/Rtmp1aHGqx’ ‘~/tmp/scratch/Rtmp2V6hJQ’   ‘~/tmp/scratch/Rtmp2XTRzk’ ‘~/tmp/scratch/Rtmp2nNA5S’   ‘~/tmp/scratch/Rtmp3SHbXa’ ‘~/tmp/scratch/Rtmp446Ez2’   ‘~/tmp/scratch/Rtmp45yJlp’ ‘~/tmp/scratch/Rtmp4M4Iyq’   ‘~/tmp/scratch/Rtmp4RTItE’ ‘~/tmp/scratch/Rtmp4kXSND’   ‘~/tmp/scratch/Rtmp5H3lR3’ ‘~/tmp/scratch/Rtmp5SdD91’   ‘~/tmp/scratch/Rtmp5pWxgH’ ‘~/tmp/scratch/Rtmp7RrhXZ’   ‘~/tmp/scratch/Rtmp7S0jnT’ ‘~/tmp/scratch/Rtmp7j6Wk8’   ‘~/tmp/scratch/Rtmp89rRg7’ ‘~/tmp/scratch/Rtmp8AfRf9’   ‘~/tmp/scratch/Rtmp8IDn32’ ‘~/tmp/scratch/Rtmp8st1qF’   ‘~/tmp/scratch/Rtmp9BpAXv’ ‘~/tmp/scratch/Rtmp9ucMYQ’   ‘~/tmp/scratch/RtmpACWag5’ ‘~/tmp/scratch/RtmpAUyOxo’   ‘~/tmp/scratch/RtmpBtaj7r’ ‘~/tmp/scratch/RtmpC31eN9’   ‘~/tmp/scratch/RtmpD2QCyF’ ‘~/tmp/scratch/RtmpGaqexs’   ‘~/tmp/scratch/RtmpGoeE8J’ ‘~/tmp/scratch/RtmpHBTHWJ’   ‘~/tmp/scratch/RtmpHJVn2k’ ‘~/tmp/scratch/RtmpHK9bcO’   ‘~/tmp/scratch/RtmpHKCSr0’ ‘~/tmp/scratch/RtmpHPJROg’   ‘~/tmp/scratch/RtmpI0VNA2’ ‘~/tmp/scratch/RtmpIGwKLX’   ‘~/tmp/scratch/RtmpIUWNhP’ ‘~/tmp/scratch/RtmpIUcKED’   ‘~/tmp/scratch/RtmpImtQaw’ ‘~/tmp/scratch/RtmpJhDjsc’   ‘~/tmp/scratch/RtmpK1PjvB’ ‘~/tmp/scratch/RtmpKSEVx7’   ‘~/tmp/scratch/RtmpKVge96’ ‘~/tmp/scratch/RtmpKfEV1Q’   ‘~/tmp/scratch/RtmpKq8fjS’ ‘~/tmp/scratch/RtmpLBcpzw’   ‘~/tmp/scratch/RtmpLlMQRL’ ‘~/tmp/scratch/RtmpLoV6hq’   ‘~/tmp/scratch/RtmpMUKweV’ ‘~/tmp/scratch/RtmpMUgauA’   ‘~/tmp/scratch/RtmpMWY72A’ ‘~/tmp/scratch/RtmpMeegx9’   ‘~/tmp/scratch/RtmpNW0Gwc’ ‘~/tmp/scratch/RtmpNuK3oL’   ‘~/tmp/scratch/RtmpOAOO5B’ ‘~/tmp/scratch/RtmpOaGGNi’   ‘~/tmp/scratch/RtmpPDDyei’ ‘~/tmp/scratch/RtmpPKzEru’   ‘~/tmp/scratch/RtmpPUL7ik’ ‘~/tmp/scratch/RtmpPpgW7E’   ‘~/tmp/scratch/RtmpQOC3Fx’ ‘~/tmp/scratch/RtmpQY5PTC’   ‘~/tmp/scratch/RtmpQlG9zp’ ‘~/tmp/scratch/RtmpQsGFwo’   ‘~/tmp/scratch/RtmpRIOlXF’ ‘~/tmp/scratch/RtmpRpKpJD’   ‘~/tmp/scratch/RtmpRtARuf’ ‘~/tmp/scratch/RtmpSIYAI7’   ‘~/tmp/scratch/RtmpSO2v6F’ ‘~/tmp/scratch/RtmpSp713k’   ‘~/tmp/scratch/RtmpT9KPqG’ ‘~/tmp/scratch/RtmpTDL22B’   ‘~/tmp/scratch/RtmpTLIgnv’ ‘~/tmp/scratch/RtmpThJCHM’   ‘~/tmp/scratch/RtmpTz8hDG’ ‘~/tmp/scratch/RtmpU60osf’   ‘~/tmp/scratch/RtmpU73sHq’ ‘~/tmp/scratch/RtmpUAeSDM’   ‘~/tmp/scratch/RtmpUQXpQQ’ ‘~/tmp/scratch/RtmpURXsxy’   ‘~/tmp/scratch/RtmpUfEcjS’ ‘~/tmp/scratch/RtmpUso27h’   ‘~/tmp/scratch/RtmpV5tbD4’ ‘~/tmp/scratch/RtmpWB4WNZ’   ‘~/tmp/scratch/RtmpWKJLAH’ ‘~/tmp/scratch/RtmpXtuRtI’   ‘~/tmp/scratch/RtmpYMoc7k’ ‘~/tmp/scratch/RtmpZ9x7ty’   ‘~/tmp/scratch/RtmpZBUoFO’ ‘~/tmp/scratch/RtmpZHnCEg’   ‘~/tmp/scratch/RtmpazcpZr’ ‘~/tmp/scratch/RtmpbDsrvh’   ‘~/tmp/scratch/RtmpbdkaLl’ ‘~/tmp/scratch/Rtmpbrchf1’   ‘~/tmp/scratch/RtmpctG4FE’ ‘~/tmp/scratch/RtmpevQsfi’   ‘~/tmp/scratch/RtmpfQwFZD’ ‘~/tmp/scratch/Rtmpfk6SOQ’   ‘~/tmp/scratch/RtmpfkCobq’ ‘~/tmp/scratch/RtmpgRkQy1’   ‘~/tmp/scratch/Rtmpgu9sOK’ ‘~/tmp/scratch/RtmpiZVjdz’   ‘~/tmp/scratch/RtmpjN1cfp’ ‘~/tmp/scratch/RtmpjX3mFH’   ‘~/tmp/scratch/RtmpjaDdUd’ ‘~/tmp/scratch/RtmpkVNazi’   ‘~/tmp/scratch/RtmpkkkCq0’ ‘~/tmp/scratch/RtmplswZkm’   ‘~/tmp/scratch/RtmpmCDF9j’ ‘~/tmp/scratch/RtmpnoReyx’   ‘~/tmp/scratch/RtmpoblZZ0’ ‘~/tmp/scratch/RtmpoqcG0P’   ‘~/tmp/scratch/Rtmpp41ZMr’ ‘~/tmp/scratch/RtmppBwdGE’   ‘~/tmp/scratch/RtmppJjzH7’ ‘~/tmp/scratch/Rtmpq4gPVk’   ‘~/tmp/scratch/RtmpqjnCXq’ ‘~/tmp/scratch/RtmpqoKGcv’   ‘~/tmp/scratch/RtmproXPEL’ ‘~/tmp/scratch/RtmprrcrRf’   ‘~/tmp/scratch/RtmprvIdDT’ ‘~/tmp/scratch/Rtmpsa8Ydm’   ‘~/tmp/scratch/RtmptM7CfT’ ‘~/tmp/scratch/Rtmpu8jEZA’   ‘~/tmp/scratch/RtmpuBk3nR’ ‘~/tmp/scratch/RtmpuG3CQF’   ‘~/tmp/scratch/RtmpvIQ0Wr’ ‘~/tmp/scratch/RtmpvoGGQF’   ‘~/tmp/scratch/RtmpvzeUVh’ ‘~/tmp/scratch/RtmpwRsZ6g’   ‘~/tmp/scratch/RtmpwcgEqS’ ‘~/tmp/scratch/RtmpwuOqb2’   ‘~/tmp/scratch/Rtmpxm9eL4’ ‘~/tmp/scratch/RtmpxsqGmz’   ‘~/tmp/scratch/RtmpyaOP2o’ ‘~/tmp/scratch/RtmpyjBCfX’   ‘~/tmp/scratch/RtmpzdcWCv’ ‘~/tmp/scratch/RtmpzlcAPJ’   ‘~/tmp/scratch/xvfb-run.0kOPaW’ ‘~/tmp/scratch/xvfb-run.1RGJqJ’   ‘~/tmp/scratch/xvfb-run.2xHwC4’ ‘~/tmp/scratch/xvfb-run.4Kb4JF’   ‘~/tmp/scratch/xvfb-run.5CFMUK’ ‘~/tmp/scratch/xvfb-run.5tihLp’   ‘~/tmp/scratch/xvfb-run.5vF76U’ ‘~/tmp/scratch/xvfb-run.6K3AC8’   ‘~/tmp/scratch/xvfb-run.6VfXz2’ ‘~/tmp/scratch/xvfb-run.6wXuIA’   ‘~/tmp/scratch/xvfb-run.70KVcx’ ‘~/tmp/scratch/xvfb-run.8XiVMn’   ‘~/tmp/scratch/xvfb-run.8sXErA’ ‘~/tmp/scratch/xvfb-run.8vJUIw’   ‘~/tmp/scratch/xvfb-run.9M9FgS’ ‘~/tmp/scratch/xvfb-run.AMBt6V’   ‘~/tmp/scratch/xvfb-run.AhygBs’ ‘~/tmp/scratch/xvfb-run.AyX6fQ’   ‘~/tmp/scratch/xvfb-run.EVG57x’ ‘~/tmp/scratch/xvfb-run.IABV8P’   ‘~/tmp/scratch/xvfb-run.JPvozE’ ‘~/tmp/scratch/xvfb-run.MaEJmj’   ‘~/tmp/scratch/xvfb-run.NksR8p’ ‘~/tmp/scratch/xvfb-run.NmHwC1’   ‘~/tmp/scratch/xvfb-run.OCBWyT’ ‘~/tmp/scratch/xvfb-run.PJMyRS’   ‘~/tmp/scratch/xvfb-run.PQ59Rf’ ‘~/tmp/scratch/xvfb-run.PXrUG0’   ‘~/tmp/scratch/xvfb-run.Pvyrqb’ ‘~/tmp/scratch/xvfb-run.QmXdqE’   ‘~/tmp/scratch/xvfb-run.SACbRp’ ‘~/tmp/scratch/xvfb-run.TW6iZC’   ‘~/tmp/scratch/xvfb-run.XDuqes’ ‘~/tmp/scratch/xvfb-run.Y0jIOo’   ‘~/tmp/scratch/xvfb-run.YQnskA’ ‘~/tmp/scratch/xvfb-run.Yq2wcS’   ‘~/tmp/scratch/xvfb-run.Z98Wx7’ ‘~/tmp/scratch/xvfb-run.ZtAIIp’   ‘~/tmp/scratch/xvfb-run.aDj1JS’ ‘~/tmp/scratch/xvfb-run.cqnMXO’   ‘~/tmp/scratch/xvfb-run.dcvcOc’ ‘~/tmp/scratch/xvfb-run.df4LE8’   ‘~/tmp/scratch/xvfb-run.eERO9z’ ‘~/tmp/scratch/xvfb-run.efdHAQ’   ‘~/tmp/scratch/xvfb-run.fu2qfG’ ‘~/tmp/scratch/xvfb-run.g0PxNj’   ‘~/tmp/scratch/xvfb-run.jvqqsn’ ‘~/tmp/scratch/xvfb-run.l0Vy0N’   ‘~/tmp/scratch/xvfb-run.o46CZN’ ‘~/tmp/scratch/xvfb-run.oLzx56’   ‘~/tmp/scratch/xvfb-run.opa53t’ ‘~/tmp/scratch/xvfb-run.p5ZcNG’   ‘~/tmp/scratch/xvfb-run.pUKn3S’ ‘~/tmp/scratch/xvfb-run.r9q8Di’   ‘~/tmp/scratch/xvfb-run.s7UgRu’ ‘~/tmp/scratch/xvfb-run.t6knPk’   ‘~/tmp/scratch/xvfb-run.uPoLgE’ ‘~/tmp/scratch/xvfb-run.veNZ4n’   ‘~/tmp/scratch/xvfb-run.wdATUK’ ‘~/tmp/scratch/xvfb-run.y3mTHN’   ‘~/tmp/scratch/xvfb-run.yeerig’
• DONE

Status: 2 NOTEs