• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:22:53 UTC
• checking for file ‘difconet/DESCRIPTION’ ... OK
• this is package ‘difconet’ version ‘1.0-4’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘difconet’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/8s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [21s/22s] OK Examples with CPU (user + system) or elapsed time > 5s                                    user system elapsed difconet.plot.gene.correlations 6.839 0.142 7.368 difconet.run 6.477 0.016 6.788 difconet.plot.histograms.heatmap2 6.421 0.032 6.753
• checking PDF version of manual ... [4s/4s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp01yhco’ ‘~/tmp/scratch/Rtmp0LVBOL’   ‘~/tmp/scratch/Rtmp0wJADX’ ‘~/tmp/scratch/Rtmp29gjWq’   ‘~/tmp/scratch/Rtmp2YmnYQ’ ‘~/tmp/scratch/Rtmp3snGo3’   ‘~/tmp/scratch/Rtmp5bNpBF’ ‘~/tmp/scratch/Rtmp5kEV1I’   ‘~/tmp/scratch/Rtmp6gyX4h’ ‘~/tmp/scratch/Rtmp7esuOa’   ‘~/tmp/scratch/Rtmp8IDn32’ ‘~/tmp/scratch/Rtmp8ceWRd’   ‘~/tmp/scratch/Rtmp9T5Gn7’ ‘~/tmp/scratch/Rtmp9d9vYi’   ‘~/tmp/scratch/Rtmp9tBD4c’ ‘~/tmp/scratch/Rtmp9ucMYQ’   ‘~/tmp/scratch/RtmpBaIRVJ’ ‘~/tmp/scratch/RtmpCOUa7K’   ‘~/tmp/scratch/RtmpCmDN20’ ‘~/tmp/scratch/RtmpD6XWsO’   ‘~/tmp/scratch/RtmpDq4dxa’ ‘~/tmp/scratch/RtmpEbnoaX’   ‘~/tmp/scratch/RtmpEcjzg1’ ‘~/tmp/scratch/RtmpGHeC2Y’   ‘~/tmp/scratch/RtmpGNIMt6’ ‘~/tmp/scratch/RtmpGaqexs’   ‘~/tmp/scratch/RtmpIBP5wP’ ‘~/tmp/scratch/RtmpIUWNhP’   ‘~/tmp/scratch/RtmpImtQaw’ ‘~/tmp/scratch/RtmpJmS1sN’   ‘~/tmp/scratch/RtmpKSEVx7’ ‘~/tmp/scratch/RtmpKbeqzl’   ‘~/tmp/scratch/RtmpKizJeD’ ‘~/tmp/scratch/RtmpKkTQoM’   ‘~/tmp/scratch/RtmpLGuv5k’ ‘~/tmp/scratch/RtmpLQ8OXQ’   ‘~/tmp/scratch/RtmpLlMQRL’ ‘~/tmp/scratch/RtmpMKbWPo’   ‘~/tmp/scratch/RtmpMUKweV’ ‘~/tmp/scratch/RtmpNIQDac’   ‘~/tmp/scratch/RtmpNamOMP’ ‘~/tmp/scratch/RtmpNnlbII’   ‘~/tmp/scratch/RtmpOHF70O’ ‘~/tmp/scratch/RtmpOweKSg’   ‘~/tmp/scratch/RtmpP6HgDj’ ‘~/tmp/scratch/RtmpQxKdat’   ‘~/tmp/scratch/RtmpRPIIxv’ ‘~/tmp/scratch/RtmpRZ6zRu’   ‘~/tmp/scratch/RtmpSIYAI7’ ‘~/tmp/scratch/RtmpScYaML’   ‘~/tmp/scratch/RtmpStHH3e’ ‘~/tmp/scratch/RtmpTKDbve’   ‘~/tmp/scratch/RtmpTOIAT5’ ‘~/tmp/scratch/RtmpTQeA2U’   ‘~/tmp/scratch/RtmpThJCHM’ ‘~/tmp/scratch/RtmpUBzkNY’   ‘~/tmp/scratch/RtmpUNycNj’ ‘~/tmp/scratch/RtmpURXsxy’   ‘~/tmp/scratch/RtmpV5ThhF’ ‘~/tmp/scratch/RtmpVHl9sh’   ‘~/tmp/scratch/RtmpWHPMSn’ ‘~/tmp/scratch/RtmpWhEWGK’   ‘~/tmp/scratch/RtmpWpWeqB’ ‘~/tmp/scratch/RtmpX9tMAq’   ‘~/tmp/scratch/RtmpXssdgd’ ‘~/tmp/scratch/RtmpXtuRtI’   ‘~/tmp/scratch/RtmpY7g7mN’ ‘~/tmp/scratch/RtmpYMoc7k’   ‘~/tmp/scratch/RtmpYvLKsn’ ‘~/tmp/scratch/RtmpZ2jWTC’   ‘~/tmp/scratch/RtmpZLazQN’ ‘~/tmp/scratch/RtmpZyefME’   ‘~/tmp/scratch/RtmpbC8zPg’ ‘~/tmp/scratch/Rtmpbrchf1’   ‘~/tmp/scratch/Rtmpbt8wWZ’ ‘~/tmp/scratch/RtmpcMpfsl’   ‘~/tmp/scratch/Rtmpce2g9h’ ‘~/tmp/scratch/Rtmpd99iRM’   ‘~/tmp/scratch/RtmpeKjo8s’ ‘~/tmp/scratch/RtmpeWqXml’   ‘~/tmp/scratch/RtmpfCBheC’ ‘~/tmp/scratch/RtmpfLguj9’   ‘~/tmp/scratch/Rtmpfh91pk’ ‘~/tmp/scratch/Rtmpg2RIY9’   ‘~/tmp/scratch/RtmpgAGEIj’ ‘~/tmp/scratch/RtmpgpOL15’   ‘~/tmp/scratch/Rtmphw8U3F’ ‘~/tmp/scratch/Rtmpi50jyp’   ‘~/tmp/scratch/RtmpjLDHGn’ ‘~/tmp/scratch/RtmpjN1cfp’   ‘~/tmp/scratch/Rtmpk0tW06’ ‘~/tmp/scratch/RtmpkIMoDr’   ‘~/tmp/scratch/Rtmpls9GA1’ ‘~/tmp/scratch/RtmpmhUO0G’   ‘~/tmp/scratch/Rtmpn5wyVI’ ‘~/tmp/scratch/RtmpnDrnxU’   ‘~/tmp/scratch/RtmpnYDZgj’ ‘~/tmp/scratch/RtmpnoReyx’   ‘~/tmp/scratch/Rtmpp41ZMr’ ‘~/tmp/scratch/RtmppJjzH7’   ‘~/tmp/scratch/RtmppU0s0Y’ ‘~/tmp/scratch/RtmppW6kTG’   ‘~/tmp/scratch/RtmpqSbXrI’ ‘~/tmp/scratch/Rtmpr70Jtk’   ‘~/tmp/scratch/RtmprY2Pzj’ ‘~/tmp/scratch/RtmprdoFpD’   ‘~/tmp/scratch/Rtmprhbsyk’ ‘~/tmp/scratch/RtmprvIdDT’   ‘~/tmp/scratch/RtmprxDtPA’ ‘~/tmp/scratch/Rtmpt5khOZ’   ‘~/tmp/scratch/RtmptM7CfT’ ‘~/tmp/scratch/RtmptQ3Fn6’   ‘~/tmp/scratch/RtmptcGgJG’ ‘~/tmp/scratch/RtmpuIKflA’   ‘~/tmp/scratch/Rtmpue1sZQ’ ‘~/tmp/scratch/RtmpumLEyW’   ‘~/tmp/scratch/RtmpwCd2qv’ ‘~/tmp/scratch/RtmpwJmoK8’   ‘~/tmp/scratch/RtmpwJpzQK’ ‘~/tmp/scratch/RtmpxIHRMk’   ‘~/tmp/scratch/RtmpxQ9GhY’ ‘~/tmp/scratch/RtmpxcEPDL’   ‘~/tmp/scratch/Rtmpxpc4r6’ ‘~/tmp/scratch/Rtmpy3pWVJ’   ‘~/tmp/scratch/RtmpycZDQ0’ ‘~/tmp/scratch/xvfb-run.2xHwC4’   ‘~/tmp/scratch/xvfb-run.3J4NHz’ ‘~/tmp/scratch/xvfb-run.6BzOTQ’   ‘~/tmp/scratch/xvfb-run.6K3AC8’ ‘~/tmp/scratch/xvfb-run.6pXT96’   ‘~/tmp/scratch/xvfb-run.7yjBfY’ ‘~/tmp/scratch/xvfb-run.8sXErA’   ‘~/tmp/scratch/xvfb-run.CwjWkA’ ‘~/tmp/scratch/xvfb-run.ENKHUb’   ‘~/tmp/scratch/xvfb-run.Ee1pHI’ ‘~/tmp/scratch/xvfb-run.HPCN11’   ‘~/tmp/scratch/xvfb-run.IABV8P’ ‘~/tmp/scratch/xvfb-run.IAMoMS’   ‘~/tmp/scratch/xvfb-run.JPvozE’ ‘~/tmp/scratch/xvfb-run.K8zJGM’   ‘~/tmp/scratch/xvfb-run.NksR8p’ ‘~/tmp/scratch/xvfb-run.Nqjvum’   ‘~/tmp/scratch/xvfb-run.PJMyRS’ ‘~/tmp/scratch/xvfb-run.PXrUG0’   ‘~/tmp/scratch/xvfb-run.SACbRp’ ‘~/tmp/scratch/xvfb-run.SCZuui’   ‘~/tmp/scratch/xvfb-run.TKlvxU’ ‘~/tmp/scratch/xvfb-run.TW6iZC’   ‘~/tmp/scratch/xvfb-run.UNHqEp’ ‘~/tmp/scratch/xvfb-run.VXY8O2’   ‘~/tmp/scratch/xvfb-run.VcoeAV’ ‘~/tmp/scratch/xvfb-run.XDuqes’   ‘~/tmp/scratch/xvfb-run.YN9OTE’ ‘~/tmp/scratch/xvfb-run.YQnskA’   ‘~/tmp/scratch/xvfb-run.aDj1JS’ ‘~/tmp/scratch/xvfb-run.dDxr0D’   ‘~/tmp/scratch/xvfb-run.dcvcOc’ ‘~/tmp/scratch/xvfb-run.eamqQs’   ‘~/tmp/scratch/xvfb-run.efdHAQ’ ‘~/tmp/scratch/xvfb-run.iJgr3V’   ‘~/tmp/scratch/xvfb-run.j8rLqj’ ‘~/tmp/scratch/xvfb-run.ki5foe’   ‘~/tmp/scratch/xvfb-run.nTX02X’ ‘~/tmp/scratch/xvfb-run.oLzx56’   ‘~/tmp/scratch/xvfb-run.opa53t’ ‘~/tmp/scratch/xvfb-run.osst6m’   ‘~/tmp/scratch/xvfb-run.rsKuvR’ ‘~/tmp/scratch/xvfb-run.tOusNx’   ‘~/tmp/scratch/xvfb-run.typiyn’ ‘~/tmp/scratch/xvfb-run.ueBOin’   ‘~/tmp/scratch/xvfb-run.vlsZkd’ ‘~/tmp/scratch/xvfb-run.xZixe9’
• DONE

Status: 1 NOTE