• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:20:28 UTC
• checking for file ‘denoiSeq/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘denoiSeq’ version ‘0.1.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘denoiSeq’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/9s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/16s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0ErgpF’ ‘~/tmp/scratch/Rtmp0R2Re9’   ‘~/tmp/scratch/Rtmp0Uzgey’ ‘~/tmp/scratch/Rtmp0Y7pOH’   ‘~/tmp/scratch/Rtmp0d2E8A’ ‘~/tmp/scratch/Rtmp0hAErX’   ‘~/tmp/scratch/Rtmp1OvNuI’ ‘~/tmp/scratch/Rtmp2c1CmO’   ‘~/tmp/scratch/Rtmp2wNJ8M’ ‘~/tmp/scratch/Rtmp3Rsi4k’   ‘~/tmp/scratch/Rtmp4MW9QQ’ ‘~/tmp/scratch/Rtmp5qgdS3’   ‘~/tmp/scratch/Rtmp6bY7t2’ ‘~/tmp/scratch/Rtmp6edUsz’   ‘~/tmp/scratch/Rtmp6tHC8k’ ‘~/tmp/scratch/Rtmp8hs7Hi’   ‘~/tmp/scratch/Rtmp9Lapax’ ‘~/tmp/scratch/RtmpA9Yuva’   ‘~/tmp/scratch/RtmpAPvQyf’ ‘~/tmp/scratch/RtmpB3a7KZ’   ‘~/tmp/scratch/RtmpBTiy2V’ ‘~/tmp/scratch/RtmpCVFKO5’   ‘~/tmp/scratch/RtmpCpj1aQ’ ‘~/tmp/scratch/RtmpD8kuhl’   ‘~/tmp/scratch/RtmpDJN4Vl’ ‘~/tmp/scratch/RtmpE8ffFj’   ‘~/tmp/scratch/RtmpFI0PMV’ ‘~/tmp/scratch/RtmpGYMRJk’   ‘~/tmp/scratch/RtmpGxe7Ys’ ‘~/tmp/scratch/RtmpHGrFWe’   ‘~/tmp/scratch/RtmpHxSIli’ ‘~/tmp/scratch/RtmpI15NeY’   ‘~/tmp/scratch/RtmpIfqVpw’ ‘~/tmp/scratch/RtmpIz1ji2’   ‘~/tmp/scratch/RtmpJbO7A2’ ‘~/tmp/scratch/RtmpK7damZ’   ‘~/tmp/scratch/RtmpKi1Wqk’ ‘~/tmp/scratch/RtmpKjJWDA’   ‘~/tmp/scratch/RtmpM6sqjF’ ‘~/tmp/scratch/RtmpMO2Tg4’   ‘~/tmp/scratch/RtmpNuX6xc’ ‘~/tmp/scratch/RtmpOEIe3Y’   ‘~/tmp/scratch/RtmpOuOhxY’ ‘~/tmp/scratch/RtmpP5afuy’   ‘~/tmp/scratch/RtmpPX67zj’ ‘~/tmp/scratch/RtmpRUd4O8’   ‘~/tmp/scratch/RtmpRx3HNt’ ‘~/tmp/scratch/RtmpSJfdBH’   ‘~/tmp/scratch/RtmpSKI8kZ’ ‘~/tmp/scratch/RtmpSUO0EY’   ‘~/tmp/scratch/RtmpSbFyPZ’ ‘~/tmp/scratch/RtmpTYKC5b’   ‘~/tmp/scratch/RtmpTh1a7y’ ‘~/tmp/scratch/RtmpU6zUP7’   ‘~/tmp/scratch/RtmpVlLf1K’ ‘~/tmp/scratch/RtmpW7bAyq’   ‘~/tmp/scratch/RtmpWJGbs0’ ‘~/tmp/scratch/RtmpWSLvq3’   ‘~/tmp/scratch/RtmpWjmj23’ ‘~/tmp/scratch/RtmpWpVCrQ’   ‘~/tmp/scratch/RtmpXNL3uZ’ ‘~/tmp/scratch/RtmpXQZABM’   ‘~/tmp/scratch/RtmpYUK7Cy’ ‘~/tmp/scratch/RtmpZYUx3A’   ‘~/tmp/scratch/Rtmpb6SKfx’ ‘~/tmp/scratch/RtmpbEHgYu’   ‘~/tmp/scratch/RtmpbPAnjD’ ‘~/tmp/scratch/RtmpbXSFCu’   ‘~/tmp/scratch/RtmpblBAxj’ ‘~/tmp/scratch/Rtmpbq4VSw’   ‘~/tmp/scratch/RtmpcX5UG9’ ‘~/tmp/scratch/RtmpceRKfj’   ‘~/tmp/scratch/RtmpcgzD4n’ ‘~/tmp/scratch/Rtmpe22Tp4’   ‘~/tmp/scratch/RtmpeMUmhr’ ‘~/tmp/scratch/Rtmpf5uwWJ’   ‘~/tmp/scratch/Rtmpfi9VU6’ ‘~/tmp/scratch/Rtmpftojq0’   ‘~/tmp/scratch/Rtmpg5ZIwp’ ‘~/tmp/scratch/RtmpgFZ2K0’   ‘~/tmp/scratch/RtmpgHeW1N’ ‘~/tmp/scratch/Rtmph2ZDOg’   ‘~/tmp/scratch/RtmpheFER1’ ‘~/tmp/scratch/Rtmpi1CCuc’   ‘~/tmp/scratch/RtmpiFTrC8’ ‘~/tmp/scratch/RtmpiaO32e’   ‘~/tmp/scratch/RtmpiiGGa5’ ‘~/tmp/scratch/Rtmpikofi4’   ‘~/tmp/scratch/RtmpjIJ8cp’ ‘~/tmp/scratch/RtmpjXsBZC’   ‘~/tmp/scratch/Rtmpkr1rqO’ ‘~/tmp/scratch/Rtmplfgh8c’   ‘~/tmp/scratch/RtmpmlRrtT’ ‘~/tmp/scratch/RtmpnVzkzJ’   ‘~/tmp/scratch/Rtmpp2BITy’ ‘~/tmp/scratch/RtmppU6eA4’   ‘~/tmp/scratch/RtmpqJZwtM’ ‘~/tmp/scratch/RtmpqoJHSr’   ‘~/tmp/scratch/RtmptNlu6v’ ‘~/tmp/scratch/RtmpteNHdH’   ‘~/tmp/scratch/Rtmpu1VUVb’ ‘~/tmp/scratch/RtmpuHKhov’   ‘~/tmp/scratch/RtmpuvBGHF’ ‘~/tmp/scratch/RtmpvlBxeV’   ‘~/tmp/scratch/RtmpwtSt04’ ‘~/tmp/scratch/RtmpxICgf2’   ‘~/tmp/scratch/RtmpxNVrvW’ ‘~/tmp/scratch/RtmpyAnZgG’   ‘~/tmp/scratch/RtmpyJvz64’ ‘~/tmp/scratch/RtmpyL3IDz’   ‘~/tmp/scratch/RtmpyN57Yb’ ‘~/tmp/scratch/Rtmpyy5LM7’   ‘~/tmp/scratch/Rtmpz3eXeq’ ‘~/tmp/scratch/RtmpzMGZRT’   ‘~/tmp/scratch/RtmpzUQWTh’ ‘~/tmp/scratch/xvfb-run.0NXZyQ’   ‘~/tmp/scratch/xvfb-run.1LmNq6’ ‘~/tmp/scratch/xvfb-run.31GKkR’   ‘~/tmp/scratch/xvfb-run.34KSVR’ ‘~/tmp/scratch/xvfb-run.3hPDt0’   ‘~/tmp/scratch/xvfb-run.3iXLbw’ ‘~/tmp/scratch/xvfb-run.7vyHYN’   ‘~/tmp/scratch/xvfb-run.9lbrTN’ ‘~/tmp/scratch/xvfb-run.DOja7t’   ‘~/tmp/scratch/xvfb-run.DqLC4Q’ ‘~/tmp/scratch/xvfb-run.EAviMD’   ‘~/tmp/scratch/xvfb-run.FKTP0t’ ‘~/tmp/scratch/xvfb-run.JMXx49’   ‘~/tmp/scratch/xvfb-run.KQkjJg’ ‘~/tmp/scratch/xvfb-run.LEFTAs’   ‘~/tmp/scratch/xvfb-run.MlMtLq’ ‘~/tmp/scratch/xvfb-run.MqK7MM’   ‘~/tmp/scratch/xvfb-run.R8yKXm’ ‘~/tmp/scratch/xvfb-run.RjepXV’   ‘~/tmp/scratch/xvfb-run.THSgIk’ ‘~/tmp/scratch/xvfb-run.ZBtDZD’   ‘~/tmp/scratch/xvfb-run.d8h4i1’ ‘~/tmp/scratch/xvfb-run.e99bRb’   ‘~/tmp/scratch/xvfb-run.eQfpZL’ ‘~/tmp/scratch/xvfb-run.lYIWfK’   ‘~/tmp/scratch/xvfb-run.m3whDz’ ‘~/tmp/scratch/xvfb-run.o2yzPl’   ‘~/tmp/scratch/xvfb-run.oEFNHz’ ‘~/tmp/scratch/xvfb-run.pVUtpg’   ‘~/tmp/scratch/xvfb-run.pam3B4’ ‘~/tmp/scratch/xvfb-run.qjnixB’   ‘~/tmp/scratch/xvfb-run.sQs7lq’ ‘~/tmp/scratch/xvfb-run.tLQWRq’   ‘~/tmp/scratch/xvfb-run.u5uYd6’ ‘~/tmp/scratch/xvfb-run.xYNCyw’   ‘~/tmp/scratch/xvfb-run.ykQc7N’ ‘~/tmp/scratch/xvfb-run.zPudTE’
• DONE

Status: 1 NOTE