• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 14:20:59 UTC
• checking for file ‘denoiSeq/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘denoiSeq’ version ‘0.1.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘denoiSeq’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/11s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/13s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp07lHnM’ ‘~/tmp/scratch/Rtmp15aCq9’   ‘~/tmp/scratch/Rtmp1nL7Ig’ ‘~/tmp/scratch/Rtmp2JuAst’   ‘~/tmp/scratch/Rtmp2LoVjq’ ‘~/tmp/scratch/Rtmp2k0L0U’   ‘~/tmp/scratch/Rtmp2yNBcU’ ‘~/tmp/scratch/Rtmp2zIYMD’   ‘~/tmp/scratch/Rtmp3rVzJy’ ‘~/tmp/scratch/Rtmp4mCN6g’   ‘~/tmp/scratch/Rtmp5I7RLe’ ‘~/tmp/scratch/Rtmp5c9HfS’   ‘~/tmp/scratch/Rtmp64zdjv’ ‘~/tmp/scratch/Rtmp6TAOYL’   ‘~/tmp/scratch/Rtmp96Yqdi’ ‘~/tmp/scratch/Rtmp9LEyNU’   ‘~/tmp/scratch/Rtmp9iBh28’ ‘~/tmp/scratch/Rtmp9qaOFo’   ‘~/tmp/scratch/RtmpABS8U6’ ‘~/tmp/scratch/RtmpAOaD81’   ‘~/tmp/scratch/RtmpAl4njt’ ‘~/tmp/scratch/RtmpBLeTNo’   ‘~/tmp/scratch/RtmpBOIClW’ ‘~/tmp/scratch/RtmpBtNAfF’   ‘~/tmp/scratch/RtmpC5hlkD’ ‘~/tmp/scratch/RtmpCKaDH8’   ‘~/tmp/scratch/RtmpCZXvoa’ ‘~/tmp/scratch/RtmpCZerJf’   ‘~/tmp/scratch/RtmpD9BCUy’ ‘~/tmp/scratch/RtmpDmIK3m’   ‘~/tmp/scratch/RtmpDo93Eb’ ‘~/tmp/scratch/RtmpEIikNV’   ‘~/tmp/scratch/RtmpEkaqn7’ ‘~/tmp/scratch/RtmpFHYdpX’   ‘~/tmp/scratch/RtmpGCnMUC’ ‘~/tmp/scratch/RtmpGqjcrp’   ‘~/tmp/scratch/RtmpHlbYiX’ ‘~/tmp/scratch/RtmpIUrOGD’   ‘~/tmp/scratch/RtmpIbMFuX’ ‘~/tmp/scratch/RtmpJEFeMn’   ‘~/tmp/scratch/RtmpJgZ70o’ ‘~/tmp/scratch/RtmpJx0lyb’   ‘~/tmp/scratch/RtmpK1QrH5’ ‘~/tmp/scratch/RtmpKIlZIP’   ‘~/tmp/scratch/RtmpKPmdSb’ ‘~/tmp/scratch/RtmpKXjIi0’   ‘~/tmp/scratch/RtmpL5s6Rf’ ‘~/tmp/scratch/RtmpLDmFZ4’   ‘~/tmp/scratch/RtmpLGhPPH’ ‘~/tmp/scratch/RtmpLlFolr’   ‘~/tmp/scratch/RtmpMdNNwI’ ‘~/tmp/scratch/RtmpMxApnP’   ‘~/tmp/scratch/RtmpNe3vb3’ ‘~/tmp/scratch/RtmpPC7XzF’   ‘~/tmp/scratch/RtmpPYxVe5’ ‘~/tmp/scratch/RtmpPzfzoW’   ‘~/tmp/scratch/RtmpQyTLY3’ ‘~/tmp/scratch/RtmpSEnCgF’   ‘~/tmp/scratch/RtmpT25VDt’ ‘~/tmp/scratch/RtmpUpnFnU’   ‘~/tmp/scratch/RtmpUucVEL’ ‘~/tmp/scratch/RtmpV8aOwx’   ‘~/tmp/scratch/RtmpVLVOY3’ ‘~/tmp/scratch/RtmpW1PolY’   ‘~/tmp/scratch/RtmpWNA23U’ ‘~/tmp/scratch/RtmpWlZPr7’   ‘~/tmp/scratch/RtmpWt3zro’ ‘~/tmp/scratch/RtmpXK6ZjA’   ‘~/tmp/scratch/RtmpXwEwAs’ ‘~/tmp/scratch/RtmpYAcxJB’   ‘~/tmp/scratch/RtmpYVdq6O’ ‘~/tmp/scratch/RtmpYcKiCz’   ‘~/tmp/scratch/RtmpYcsT7k’ ‘~/tmp/scratch/RtmpZ4NrkR’   ‘~/tmp/scratch/RtmpZ8V9g6’ ‘~/tmp/scratch/RtmpZkZJlk’   ‘~/tmp/scratch/RtmpZt6j1P’ ‘~/tmp/scratch/RtmpZtFHfk’   ‘~/tmp/scratch/Rtmpan42cW’ ‘~/tmp/scratch/RtmpboL82A’   ‘~/tmp/scratch/Rtmpcb0T3y’ ‘~/tmp/scratch/Rtmpd5CNkF’   ‘~/tmp/scratch/Rtmpd86I8b’ ‘~/tmp/scratch/RtmpeLa97M’   ‘~/tmp/scratch/RtmpeT6oJa’ ‘~/tmp/scratch/Rtmpf8kNKq’   ‘~/tmp/scratch/RtmpfuCW7f’ ‘~/tmp/scratch/Rtmpg4ynJx’   ‘~/tmp/scratch/RtmpgOem01’ ‘~/tmp/scratch/Rtmpgnfuob’   ‘~/tmp/scratch/RtmpgoTlpJ’ ‘~/tmp/scratch/RtmphootfO’   ‘~/tmp/scratch/RtmphsgK8h’ ‘~/tmp/scratch/Rtmpi11puH’   ‘~/tmp/scratch/RtmpiDEwMu’ ‘~/tmp/scratch/Rtmpimcp4E’   ‘~/tmp/scratch/RtmpjLvrZ6’ ‘~/tmp/scratch/RtmpjWO4HQ’   ‘~/tmp/scratch/RtmpjcC9ua’ ‘~/tmp/scratch/RtmpkbN1lR’   ‘~/tmp/scratch/RtmpkqF7Wu’ ‘~/tmp/scratch/RtmplMfT3h’   ‘~/tmp/scratch/RtmplqfUaq’ ‘~/tmp/scratch/RtmpmJwL3c’   ‘~/tmp/scratch/RtmpmKHrUk’ ‘~/tmp/scratch/RtmpmMRrv2’   ‘~/tmp/scratch/Rtmpmg9Unt’ ‘~/tmp/scratch/RtmpnsQ4JO’   ‘~/tmp/scratch/RtmpoJLU5l’ ‘~/tmp/scratch/RtmpoLaouG’   ‘~/tmp/scratch/RtmpodYK3N’ ‘~/tmp/scratch/Rtmpp8MNpo’   ‘~/tmp/scratch/RtmppdAgk2’ ‘~/tmp/scratch/RtmppenXMB’   ‘~/tmp/scratch/RtmppknYoo’ ‘~/tmp/scratch/RtmpqCNpxU’   ‘~/tmp/scratch/Rtmpqh0shj’ ‘~/tmp/scratch/Rtmpre0BtO’   ‘~/tmp/scratch/RtmpsJh2po’ ‘~/tmp/scratch/RtmpsrrZ0a’   ‘~/tmp/scratch/RtmptNbjkA’ ‘~/tmp/scratch/Rtmpv47Wqm’   ‘~/tmp/scratch/RtmpvB8snk’ ‘~/tmp/scratch/RtmpvJOVbP’   ‘~/tmp/scratch/RtmpwDFVRH’ ‘~/tmp/scratch/RtmpwVlwGw’   ‘~/tmp/scratch/RtmpwqPynT’ ‘~/tmp/scratch/xvfb-run.00wu4s’   ‘~/tmp/scratch/xvfb-run.11rD8P’ ‘~/tmp/scratch/xvfb-run.1UO4uX’   ‘~/tmp/scratch/xvfb-run.51rQb7’ ‘~/tmp/scratch/xvfb-run.6CAVsr’   ‘~/tmp/scratch/xvfb-run.6b9qah’ ‘~/tmp/scratch/xvfb-run.8ajFPS’   ‘~/tmp/scratch/xvfb-run.8sKPCM’ ‘~/tmp/scratch/xvfb-run.B5FTCn’   ‘~/tmp/scratch/xvfb-run.BD84DI’ ‘~/tmp/scratch/xvfb-run.BTtL7r’   ‘~/tmp/scratch/xvfb-run.C58cyZ’ ‘~/tmp/scratch/xvfb-run.FxCzE6’   ‘~/tmp/scratch/xvfb-run.HVwKve’ ‘~/tmp/scratch/xvfb-run.Hn36yy’   ‘~/tmp/scratch/xvfb-run.HwUP59’ ‘~/tmp/scratch/xvfb-run.Lt4Gr0’   ‘~/tmp/scratch/xvfb-run.NPCGJC’ ‘~/tmp/scratch/xvfb-run.NgAxAX’   ‘~/tmp/scratch/xvfb-run.OQQAV9’ ‘~/tmp/scratch/xvfb-run.OsUdKv’   ‘~/tmp/scratch/xvfb-run.QLK2zN’ ‘~/tmp/scratch/xvfb-run.RlFhmd’   ‘~/tmp/scratch/xvfb-run.S7KhEH’ ‘~/tmp/scratch/xvfb-run.VpJlTD’   ‘~/tmp/scratch/xvfb-run.X1h9fc’ ‘~/tmp/scratch/xvfb-run.X8tLhM’   ‘~/tmp/scratch/xvfb-run.ZkfU2s’ ‘~/tmp/scratch/xvfb-run.aCAqC4’   ‘~/tmp/scratch/xvfb-run.bAX1C3’ ‘~/tmp/scratch/xvfb-run.dvMzKu’   ‘~/tmp/scratch/xvfb-run.efiEEr’ ‘~/tmp/scratch/xvfb-run.heM5ID’   ‘~/tmp/scratch/xvfb-run.hyGGhn’ ‘~/tmp/scratch/xvfb-run.izcP6X’   ‘~/tmp/scratch/xvfb-run.l2o2RG’ ‘~/tmp/scratch/xvfb-run.p6Syyd’   ‘~/tmp/scratch/xvfb-run.pfosJv’ ‘~/tmp/scratch/xvfb-run.qdipPq’   ‘~/tmp/scratch/xvfb-run.uAVPb5’ ‘~/tmp/scratch/xvfb-run.viosRc’   ‘~/tmp/scratch/xvfb-run.xDcSZo’ ‘~/tmp/scratch/xvfb-run.yRamEG’   ‘~/tmp/scratch/xvfb-run.ytevrK’ ‘~/tmp/scratch/xvfb-run.zNlSrf’
• DONE

Status: 1 NOTE