• using R Under development (unstable) (2026-06-06 r90114)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-1) 16.1.0     GNU Fortran (Debian 16.1.0-1) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-06-07 12:26:57 UTC
• checking for file ‘dendroNetwork/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘dendroNetwork’ version ‘0.5.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘DiagrammeR’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘dendroNetwork’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running massageExamples to create ‘dendroNetwork-Ex.R’ failed Error in file(out, "wt") : cannot open the connection Calls: <Anonymous> -> Rd2ex -> file In addition: Warning message: In file(out, "wt") :   cannot open file '/tmp/Rtmp1I3yb2/file3f671a5f176fd8/cyto_create_gn_style.R': No space left on device Execution halted  NONE
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/10s] OK   Running ‘testthat.R’ [8s/10s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/9s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘cytoscape.Rmd’ using rmarkdown --- finished re-building ‘cytoscape.Rmd’ --- re-building ‘dendroNetwork.Rmd’ using rmarkdown Quitting from dendroNetwork.Rmd:22-46 [flowchart_workflow] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'DiagrammeR' --- Backtrace:     ▆  1. └─base::loadNamespace(x)  2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)  3. └─base (local) withOneRestart(expr, restarts[[1L]])  4. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'dendroNetwork.Rmd' failed with diagnostics: there is no package called 'DiagrammeR' --- failed re-building ‘dendroNetwork.Rmd’ --- re-building ‘dendrochronological_data.Rmd’ using rmarkdown --- finished re-building ‘dendrochronological_data.Rmd’ --- re-building ‘large_datasets_communities.Rmd’ using rmarkdown --- finished re-building ‘large_datasets_communities.Rmd’ SUMMARY: processing the following file failed:   ‘dendroNetwork.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [3s/4s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs