• using R Under development (unstable) (2026-07-21 r90286)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-2) 16.1.0     GNU Fortran (Debian 16.1.0-2) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-22 14:11:23 UTC
• checking for file ‘dataganger/DESCRIPTION’ ... OK
• this is package ‘dataganger’ version ‘0.6.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘dataganger’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/22s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [71s/94s] ERROR   Running ‘testthat.R’ [71s/93s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(dataganger)   dataganger 0.6.1     Start the app: dataganger::run_app()   >   > test_check("dataganger")   Loading required package: shiny   Saving _problems/test-cli-execution-81.R   Saving _problems/test-cli-execution-82.R   Saving _problems/test-cli-execution-84.R   i `remove_ids` is TRUE: masking 1 ID column     "id"   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   x cannot open the connection   Saving _problems/test-cli-execution-107.R   x Input file does not exist: /home/hornik/tmp/scratch/Rtmp3LfRfp/file175b008522722/synthetic_bundle.zip   Saving _problems/test-cli-execution-111.R   Saving _problems/test-cli-execution-112.R   Saving _problems/test-cli-execution-113.R   Saving _problems/test-cli-execution-114.R   Saving _problems/test-cli-execution-205.R   Saving _problems/test-cli-execution-206.R   Saving _problems/test-cli-execution-234.R   Saving _problems/test-cli-execution-235.R   Saving _problems/test-cli-execution-241.R   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   Saving _problems/test-cli-execution-309.R   Saving _problems/test-cli-execution-313.R   Saving _problems/test-cli-execution-330.R   Saving _problems/test-cli-execution-334.R   Saving _problems/test-cli-execution-348.R   Saving _problems/test-cli-execution-353.R   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   Saving _problems/test-cli-execution-406.R   Saving _problems/test-cli-execution-411.R   Saving _problems/test-cli-execution-442.R   Saving _problems/test-cli-execution-447.R   Saving _problems/test-cli-execution-477.R   Saving _problems/test-cli-execution-481.R      -- DataGangeR Code Readiness ---------------------------------------------------   6 pass, 0 warn, 0 fail   v Ready: no blocking issues found      i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      -- DataGangeR Comparison -------------------------------------------------------      -- Dataset --      * Rows: 5 (original) -> 5 (synthetic)   * Columns: 2 (original) -> 2 (synthetic)   * Type match: 50%   * Missing: 0% (original) -> 0% (synthetic)      -- Numeric -- top 3 by |standardized difference| --      * x: std diff = 0.632   Orig mean (SD): 3 (1.58)      -- Categorical -- top 3 by distributional difference --      * y: p = 0.00794, TVD = 1   Levels: 5 (orig) -> 1 (syn)   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:42] synthesize_synthpop: building synthpop args   [16:12:42] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:12:42] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:42] synthesize_synthpop: building synthpop args   [16:12:42] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=40      Variable(s): group have been changed for synthesis from character to factor.   [16:12:42] synthesize_synthpop: synthpop done   [16:12:42] synthesize_synthpop: building synthpop args   [16:12:42] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=40      Variable(s): group have been changed for synthesis from character to factor.   [16:12:42] synthesize_synthpop: synthpop done      Variables changed from character to factor x 1 in syn and 1 in orig      age changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable         Variables changed from character to factor x 1 in syn and 1 in orig      age changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:43] synthesize_synthpop: building synthpop args   [16:12:43] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=60   [16:12:43] synthesize_synthpop: synthpop done      -- DataGangeR Roles ------------------------------------------------------------   1 column analysed; 0 user overrides active         -- x (numeric) -> categorical candidate   * Reason: Only a few distinct values appear, so this looks like a coded   category rather than a measurement.      # A tibble: 2 x 2     variable identifies     <chr> <chr>   1 age "none"   2 city ""   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:45] synthesize_synthpop: building synthpop args   [16:12:45] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=40   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:12:45] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:46] synthesize_synthpop: building synthpop args   [16:12:46] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=8   [16:12:46] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   Synthetic and original data checked with synorig.compare,    looks like no adjustment needed      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:47] synthesize_synthpop: building synthpop args   [16:12:47] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=40   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:12:47] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:49] synthesize_synthpop: building synthpop args   [16:12:49] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=30   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:12:49] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:52] synthesize_synthpop: building synthpop args   [16:12:52] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=12   [16:12:52] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   score changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:54] synthesize_synthpop: building synthpop args   [16:12:54] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:12:54] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:55] synthesize_synthpop: building synthpop args   [16:12:55] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10      Variable(s): name, group have been changed for synthesis from character to factor.   [16:12:55] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 2 in syn and 2 in orig         Factor levels don't match for name levels combined    syn levels a b d e h i j    orig levels a b c d e f g h i j      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i `remove_ids` is TRUE: masking 1 ID column     "id"   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:56] synthesize_synthpop: building synthpop args   [16:12:56] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10      Variable(s): name, group have been changed for synthesis from character to factor.   [16:12:56] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 2 in syn and 2 in orig         Factor levels don't match for name levels combined    syn levels a b c d e g i    orig levels a b c d e f g h i j      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:57] synthesize_synthpop: building synthpop args   [16:12:57] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10      Variable(s): name, group have been changed for synthesis from character to factor.   [16:12:57] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 2 in syn and 2 in orig         Factor levels don't match for name levels combined    syn levels a b c e f h i    orig levels a b c d e f g h i j      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:57] synthesize_synthpop: building synthpop args   [16:12:57] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10      Variable(s): name, group have been changed for synthesis from character to factor.   [16:12:57] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 2 in syn and 2 in orig         Factor levels don't match for name levels combined    syn levels a b c d e g i    orig levels a b c d e f g h i j      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:58] synthesize_synthpop: building synthpop args   [16:12:58] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:12:58] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:58] synthesize_synthpop: building synthpop args   [16:12:58] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:12:58] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:58] synthesize_synthpop: building synthpop args   [16:12:58] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:12:58] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:59] synthesize_synthpop: building synthpop args   [16:12:59] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:12:59] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:59] synthesize_synthpop: building synthpop args   [16:12:59] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:12:59] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:12:59] synthesize_synthpop: building synthpop args   [16:12:59] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:12:59] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:00] synthesize_synthpop: building synthpop args   [16:13:00] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:00] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:00] synthesize_synthpop: building synthpop args   [16:13:00] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:00] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:00] synthesize_synthpop: building synthpop args   [16:13:00] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:00] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Not enough numeric columns (0) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:01] synthesize_synthpop: building synthpop args   [16:13:01] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:01] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:01] synthesize_synthpop: building synthpop args   [16:13:01] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:01] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Variables changed from character to factor x 1 in syn and 1 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:02] synthesize_synthpop: building synthpop args   [16:13:02] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:02] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   Saving _problems/test-mod-export-30.R   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   Saving _problems/test-mod-export-40.R   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:10] synthesize_synthpop: building synthpop args   [16:13:10] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=25      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:10] synthesize_synthpop: synthpop done   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:12] generate: starting on 200 row(s) x 10 column(s), engine=auto   [16:13:12] generate: pipeline ...   [16:13:12] synthesize_synthpop: building synthpop args   [16:13:12] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:12] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      [16:13:12] generate: pipeline done: 0.62s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:13] generate: starting on 200 row(s) x 10 column(s), engine=auto   [16:13:13] generate: pipeline ...   [16:13:13] synthesize_synthpop: building synthpop args   [16:13:13] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:13] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable      [16:13:14] generate: pipeline done: 0.77s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:14] generate: starting on 200 row(s) x 10 column(s), engine=auto   [16:13:14] generate: pipeline ...   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:14] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:14] generate: pipeline ...   [16:13:14] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:15] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:15] generate: pipeline ...   [16:13:15] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:15] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:15] generate: pipeline ...   [16:13:15] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:16] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:16] generate: pipeline ...   [16:13:16] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:16] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:16] generate: pipeline ...   [16:13:16] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:17] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:17] generate: pipeline ...   [16:13:17] generate: pipeline done: 0.00s   [16:13:17] generate: starting on 3 row(s) x 1 column(s), engine=auto   [16:13:17] generate: pipeline ...   [16:13:17] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:19] generate: starting on 10 row(s) x 2 column(s), engine=auto   [16:13:19] generate: pipeline ...   [16:13:19] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:20] generate: starting on 3 row(s) x 4 column(s), engine=auto   [16:13:20] generate: pipeline ...   [16:13:20] generate: pipeline done: 0.00s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:20] generate: starting on 3 row(s) x 4 column(s), engine=auto   [16:13:20] generate: pipeline ...   [16:13:20] generate: pipeline done: 0.00s   [16:13:21] generate: starting on 3 row(s) x 4 column(s), engine=auto   [16:13:21] generate: pipeline ...   [16:13:21] generate: pipeline done: 0.02s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:21] generate: starting on 3 row(s) x 4 column(s), engine=auto   [16:13:21] generate: pipeline ...   [16:13:21] generate: pipeline done: 0.00s   [16:13:21] generate: starting on 3 row(s) x 4 column(s), engine=auto   [16:13:21] generate: pipeline ...   [16:13:21] generate: pipeline done: 0.04s   [16:13:22] upload: profile_data ...   [16:13:22] upload: profile_data done: 0.03s   [16:13:23] upload: profile_data ...   [16:13:24] upload: profile_data done: 0.10s   [16:13:25] upload: profile_data ...   [16:13:25] upload: profile_data done: 0.03s   [16:13:28] upload: profile_data ...   [16:13:28] upload: profile_data done: 0.05s   [16:13:29] upload: profile_data ...   [16:13:29] upload: profile_data done: 0.03s   [16:13:30] upload: profile_data ...   [16:13:30] upload: profile_data done: 0.04s   [16:13:31] upload: profile_data ...   [16:13:31] upload: profile_data done: 0.03s   [16:13:35] upload: profile_data ...   [16:13:35] upload: profile_data done: 0.02s   [16:13:36] upload: profile_data ...   [16:13:36] upload: profile_data done: 0.03s   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "analytics"      -- Level   "hifi"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: FALSE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "redact"   * Preserve correlations: "high"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   ! Risk acknowledged by user      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "demo"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: TRUE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "none"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "analytics"      -- Level   "hifi"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: FALSE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "redact"   * Preserve correlations: "high"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   ! Risk acknowledged by user   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "development"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: FALSE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "moderate"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Relationship-aware synthesis uses synthpop when installed.   [16:13:44] upload: profile_data ...   [16:13:44] upload: profile_data done: 0.07s   [16:13:44] upload: profile_data ...   [16:13:44] upload: profile_data done: 0.03s   [16:13:45] upload: profile_data ...   [16:13:45] upload: profile_data done: 0.03s   [16:13:45] upload: profile_data ...   [16:13:45] upload: profile_data done: 0.02s   [16:13:46] upload: profile_data ...   [16:13:46] upload: profile_data done: 0.02s   [16:13:46] upload: profile_data ...   [16:13:46] upload: profile_data done: 0.01s   Tracing function "url" in package "namespace:base"   Tracing function "socketConnection" in package "namespace:base"   Tracing function "download.file" in package "namespace:utils"   Untracing function "download.file" in package "namespace:utils"   Untracing function "socketConnection" in package "namespace:base"   Untracing function "url" in package "namespace:base"   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.      Attaching package: 'bslib'      The following object is masked from 'package:utils':          page      i `remove_ids` is TRUE: masking 1 ID column     "record_id"   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:49] synthesize_synthpop: building synthpop args   [16:13:49] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=30      Variable(s): city, group have been changed for synthesis from character to factor.   [16:13:49] synthesize_synthpop: synthpop done      Variables changed from character to factor x 2 in syn and 2 in orig         *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable         -- DataGangeR Privacy Check (pre stage) ----------------------------------------      -- x HIGH severity (1) --      * patient_id: ID column detected   Recommendation: Review whether this column should be excluded from synthetic   output      -- DataGangeR Privacy Check (pre stage) ----------------------------------------   v No flags raised.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:49] synthesize_synthpop: building synthpop args   [16:13:49] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=50   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:49] synthesize_synthpop: synthpop done   smoking_status changed from integer to numeric in original to match synthetic      *****************************************************************    Differences detected and corrections attempted check output above.   Synthetic data or original or both adjusted with synorig.compare to try to make them comparable         -- DataGangeR Profile ----------------------------------------------------------   3 rows x 1 column      -- Column types --      * numeric: 1      -- Missingness summary --      Total missing: 0 / 3 (0%)      -- Per-column details --      -- x (numeric)   * Missing: 0 (0%)   * Distinct values: 3   * Range: [1, 3]   * Mean (SD): 2 (1)   * Median (IQR): 2 (1.5 -- 2.5)      i Generated at 2026-07-22 16:13:49.960636   Tracing function "browseURL" in package "namespace:utils"      -- Pre-filled GitHub issue --      GitHub issue URL:   Issue body:   Untracing function "browseURL" in package "namespace:utils"   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:51] synthesize_synthpop: building synthpop args   [16:13:51] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200   Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:51] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Not enough numeric columns (1) for correlation comparison.     Need at least 2 numeric columns with non-zero variance.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.      -- DataGangeR Synthesis Spec ---------------------------------------------------      -- Purpose   "demo"      -- Level   "marginal"      -- Key settings   * Name strategy: "preserve"   * Coarsen dates: TRUE   * Merge rare levels: TRUE (min_n = 5)   * Minimum cell size (k-anonymity): 5   * Free text strategy: "drop"   * Preserve correlations: "none"   * Preserve missingness: "approx"   * Engine: "auto (derived from objective)"   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:53] synthesize_synthpop: building synthpop args   [16:13:53] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=30      Variable(s): y have been changed for synthesis from character to factor.   [16:13:53] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:53] synthesize_synthpop: building synthpop args   [16:13:53] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20      Variable(s): y have been changed for synthesis from character to factor.   [16:13:53] synthesize_synthpop: synthpop done   [16:13:53] synthesize_synthpop: building synthpop args   [16:13:53] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20      Variable(s): y have been changed for synthesis from character to factor.   [16:13:53] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:53] synthesize_synthpop: building synthpop args   [16:13:53] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20      Variable(s): y have been changed for synthesis from character to factor.   [16:13:53] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   i `remove_ids` is TRUE: masking 1 ID column     "id"   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20      Variable(s): y have been changed for synthesis from character to factor.   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=25      Variable(s): group have been changed for synthesis from character to factor.   Warning: In your synthesis there are numeric variables with 5 or fewer levels: score.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10      Variable(s): group have been changed for synthesis from character to factor.   Warning: In your synthesis there are numeric variables with 5 or fewer levels: score.   Consider changing them to factors. You can do it using parameter 'minnumlevels'.   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: marginal bridge for 1 column(s)   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:54] synthesize_synthpop: building synthpop args   [16:13:54] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=50      Variable(s): month, region have been changed for synthesis from character to factor.   [16:13:54] synthesize_synthpop: synthpop done   [16:13:54] synthesize_synthpop: marginal bridge for 1 column(s)   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:55] synthesize_synthpop: building synthpop args   [16:13:55] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=60   [16:13:55] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:55] synthesize_synthpop: building synthpop args   [16:13:55] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=400   [16:13:55] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:55] synthesize_synthpop: building synthpop args   [16:13:55] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=200      Variable(s): arm have been changed for synthesis from character to factor.   [16:13:55] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:55] synthesize_synthpop: building synthpop args   [16:13:55] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=300   [16:13:55] synthesize_synthpop: synthpop done   i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing.   [16:13:55] synthesize_synthpop: building synthpop args   [16:13:55] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=80      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:55] synthesize_synthpop: synthpop done   [16:13:55] synthesize_synthpop: building synthpop args   [16:13:55] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=80      Variable(s): grp have been changed for synthesis from character to factor.   [16:13:55] synthesize_synthpop: synthpop done   [ FAIL 46 | WARN 42 | SKIP 11 | PASS 1251 ]      ══ Skipped tests (11) ══════════════════════════════════════════════════════════   • CLI shim subprocess is covered by source tests and manual smoke tests (1):     'test-cli-execution.R:118:3'   • On CRAN (2): 'test-app-css.R:13:3', 'test-run-synthesis-async.R:22:3'   • R/ source not available (installed package) (1): 'test-no-network.R:61:3'   • ggplot2 is installed (1): 'test-compare-synthetic.R:191:3'   • shiny, bslib, and DT are installed — skipping absent-package test (1):     'test-run-app.R:4:3'   • synthpop is installed (4): 'test-synthesize-data.R:163:3',     'test-synthesize-data.R:192:3', 'test-synthpop-fidelity.R:71:3',     'test-synthpop-fidelity.R:83:3'   • write_sas did not preserve labelling on this platform (1):     'test-read-input.R:70:5'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-cli-execution.R:81:3'): synthesize command writes the restructured bundle zip ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Failure ('test-cli-execution.R:82:3'): synthesize command writes the restructured bundle zip ──   Expected `file.exists(out_path)` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Error ('test-cli-execution.R:84:3'): synthesize command writes the restructured bundle zip ──   Error in `utils::unzip(out_path, list = TRUE)`: zip file '/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b001a6dc5af/synthetic_bundle.zip' cannot be opened   Backtrace:       ▆    1. └─utils::unzip(out_path, list = TRUE) at test-cli-execution.R:84:3   ── Failure ('test-cli-execution.R:104:3'): inspect command summarizes bundle without original data ──   Expected `dataganger_cli(...)` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Failure ('test-cli-execution.R:111:3'): inspect command summarizes bundle without original data ──   Expected `code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Failure ('test-cli-execution.R:112:3'): inspect command summarizes bundle without original data ──   Expected `any(grepl("Synthetic bundle", out, fixed = TRUE))` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-cli-execution.R:113:3'): inspect command summarizes bundle without original data ──   Expected `any(grepl("Variables:", out, fixed = TRUE))` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-cli-execution.R:114:3'): inspect command summarizes bundle without original data ──   Expected `any(grepl("Privacy", out, fixed = TRUE))` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-cli-execution.R:205:3'): synthesize --engine internal works (explicit flag) ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Failure ('test-cli-execution.R:206:3'): synthesize --engine internal works (explicit flag) ──   Expected `file.exists(out_path)` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-cli-execution.R:234:3'): synthesize routes development to synthpop and records provenance (no --engine) ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Failure ('test-cli-execution.R:235:3'): synthesize routes development to synthpop and records provenance (no --engine) ──   Expected `file.exists(out_path)` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Error ('test-cli-execution.R:241:3'): synthesize routes development to synthpop and records provenance (no --engine) ──   Error in `open.connection(con, "rb")`: cannot open the connection   Backtrace:       ▆    1. └─jsonlite::read_json(file.path(extract_dir, "agent", "manifest.json")) at test-cli-execution.R:241:3    2. └─jsonlite::parse_json(...)    3. └─jsonlite:::parse_and_simplify(...)    4. └─jsonlite:::parseJSON(txt, bigint_as_char)    5. └─jsonlite:::parse_con(txt, bigint_as_char)    6. ├─base::open(con, "rb")    7. └─base::open.connection(con, "rb")   ── Failure ('test-cli-execution.R:309:3'): synthesize with YAML engine auto keeps demo on internal ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Error ('test-cli-execution.R:313:3'): synthesize with YAML engine auto keeps demo on internal ──   Error in `open.connection(con, "rb")`: cannot open the connection   Backtrace:       ▆    1. └─jsonlite::read_json(file.path(extract_dir, "agent", "manifest.json")) at test-cli-execution.R:313:3    2. └─jsonlite::parse_json(...)    3. └─jsonlite:::parse_and_simplify(...)    4. └─jsonlite:::parseJSON(txt, bigint_as_char)    5. └─jsonlite:::parse_con(txt, bigint_as_char)    6. ├─base::open(con, "rb")    7. └─base::open.connection(con, "rb")   ── Failure ('test-cli-execution.R:330:3'): synthesize with YAML engine auto uses synthpop for development when available ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Error ('test-cli-execution.R:334:3'): synthesize with YAML engine auto uses synthpop for development when available ──   Error in `open.connection(con, "rb")`: cannot open the connection   Backtrace:       ▆    1. └─jsonlite::read_json(file.path(extract_dir, "agent", "manifest.json")) at test-cli-execution.R:334:3    2. └─jsonlite::parse_json(...)    3. └─jsonlite:::parse_and_simplify(...)    4. └─jsonlite:::parseJSON(txt, bigint_as_char)    5. └─jsonlite:::parse_con(txt, bigint_as_char)    6. ├─base::open(con, "rb")    7. └─base::open.connection(con, "rb")   ── Failure ('test-cli-execution.R:348:3'): synthesize records internal engine and no synthpop citation for demo ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Error ('test-cli-execution.R:353:3'): synthesize records internal engine and no synthpop citation for demo ──   Error in `open.connection(con, "rb")`: cannot open the connection   Backtrace:       ▆    1. └─jsonlite::read_json(file.path(extract_dir, "agent", "manifest.json")) at test-cli-execution.R:353:3    2. └─jsonlite::parse_json(...)    3. └─jsonlite:::parse_and_simplify(...)    4. └─jsonlite:::parseJSON(txt, bigint_as_char)    5. └─jsonlite:::parse_con(txt, bigint_as_char)    6. ├─base::open(con, "rb")    7. └─base::open.connection(con, "rb")   ── Failure ('test-cli-execution.R:406:3'): yaml engine is honored unless CLI --engine overrides it ──   Expected `result$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Error ('test-cli-execution.R:411:3'): yaml engine is honored unless CLI --engine overrides it ──   Error in `open.connection(con, "rb")`: cannot open the connection   Backtrace:       ▆    1. └─jsonlite::read_json(file.path(extract_dir, "agent", "manifest.json")) at test-cli-execution.R:411:3    2. └─jsonlite::parse_json(...)    3. └─jsonlite:::parse_and_simplify(...)    4. └─jsonlite:::parseJSON(txt, bigint_as_char)    5. └─jsonlite:::parse_con(txt, bigint_as_char)    6. ├─base::open(con, "rb")    7. └─base::open.connection(con, "rb")   ── Failure ('test-cli-execution.R:442:3'): synthesize --recipe reads combined spec and roles ──   Expected `res$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Error ('test-cli-execution.R:447:3'): synthesize --recipe reads combined spec and roles ──   Error in `(function (path, write = FALSE, call = caller_env()) { if (is.raw(path)) { return(rawConnection(path, "rb")) } if (!is.character(path)) { return(path) } if (is_url(path)) { ext <- tolower(tools::file_ext(path)) if (ext %in% c("gz", "bz2", "xz", "zip")) { cli::cli_abort("Remote compressed files must be handled upstream of this function.", .internal = TRUE) } if (requireNamespace("curl", quietly = TRUE)) { con <- curl::curl(path) } else { inform("`curl` package not installed, falling back to using `url()`") con <- url(path) } return(con) } path <- enc2utf8(path) if (write) { path <- normalizePath_utf8(path, mustWork = FALSE) } else { path <- check_path(path) } p <- split_path_ext(basename_utf8(path)) extension <- p$extension formats <- archive_formats(extension) while (is.null(formats) && nzchar(extension)) { extension <- split_path_ext(extension)$extension formats <- archive_formats(extension) } needs_archive <- !is.null(formats) && (write || extension != "zip") if (needs_archive) { reason <- glue("to {if (write) 'write' else 'read'} `.{p$extension}` files.") rlang::check_installed("archive", reason = reason, call = call) if (write) { if (is.null(formats[[1]])) { return(archive::file_write(path, filter = formats[[2]])) } return(archive::archive_write(path, p$path, format = formats[[1]], filter = formats[[2]])) } if (is.null(formats[[1]])) { return(archive::file_read(path, filter = formats[[2]])) } return(archive::archive_read(path, format = formats[[1]], filter = formats[[2]])) } if (!write) { compression <- detect_compression(path) } else { compression <- NA } if (is.na(compression)) { compression <- tools::file_ext(path) } if (write && compression == "zip") { cli::cli_abort(c("Can only read from, not write to, {.val .zip} files.", i = "Install the {.pkg archive} package to write {.val .zip} files."), call = call) } switch(compression, gz = gzfile(path), bz2 = bzfile(path), xz = xzfile(path), zip = zipfile(path), if (!has_trailing_newline(path)) { file(path) } else { path }) })("/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b005092d858/ex/synthetic_data.csv")`: '/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b005092d858/ex/synthetic_data.csv' does not exist.   Backtrace:       ▆    1. ├─readr::read_csv(file.path(ex, "synthetic_data.csv"), show_col_types = FALSE) at test-cli-execution.R:447:3    2. │ └─vroom::vroom(...)    3. │ └─vroom:::vroom_(...)    4. └─vroom (local) `<fn>`("/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b005092d858/ex/synthetic_data.csv")    5. └─vroom:::check_path(path)    6. └─cli::cli_abort(msg, call = call)    7. └─rlang::abort(...)   ── Failure ('test-cli-execution.R:477:3'): synthesize --roles reproduces the supplied roles (drops a column marked direct) ──   Expected `res$code` to be identical to 0L.   Differences:     `actual`: 1   `expected`: 0      ── Error ('test-cli-execution.R:481:3'): synthesize --roles reproduces the supplied roles (drops a column marked direct) ──   Error in `(function (path, write = FALSE, call = caller_env()) { if (is.raw(path)) { return(rawConnection(path, "rb")) } if (!is.character(path)) { return(path) } if (is_url(path)) { ext <- tolower(tools::file_ext(path)) if (ext %in% c("gz", "bz2", "xz", "zip")) { cli::cli_abort("Remote compressed files must be handled upstream of this function.", .internal = TRUE) } if (requireNamespace("curl", quietly = TRUE)) { con <- curl::curl(path) } else { inform("`curl` package not installed, falling back to using `url()`") con <- url(path) } return(con) } path <- enc2utf8(path) if (write) { path <- normalizePath_utf8(path, mustWork = FALSE) } else { path <- check_path(path) } p <- split_path_ext(basename_utf8(path)) extension <- p$extension formats <- archive_formats(extension) while (is.null(formats) && nzchar(extension)) { extension <- split_path_ext(extension)$extension formats <- archive_formats(extension) } needs_archive <- !is.null(formats) && (write || extension != "zip") if (needs_archive) { reason <- glue("to {if (write) 'write' else 'read'} `.{p$extension}` files.") rlang::check_installed("archive", reason = reason, call = call) if (write) { if (is.null(formats[[1]])) { return(archive::file_write(path, filter = formats[[2]])) } return(archive::archive_write(path, p$path, format = formats[[1]], filter = formats[[2]])) } if (is.null(formats[[1]])) { return(archive::file_read(path, filter = formats[[2]])) } return(archive::archive_read(path, format = formats[[1]], filter = formats[[2]])) } if (!write) { compression <- detect_compression(path) } else { compression <- NA } if (is.na(compression)) { compression <- tools::file_ext(path) } if (write && compression == "zip") { cli::cli_abort(c("Can only read from, not write to, {.val .zip} files.", i = "Install the {.pkg archive} package to write {.val .zip} files."), call = call) } switch(compression, gz = gzfile(path), bz2 = bzfile(path), xz = xzfile(path), zip = zipfile(path), if (!has_trailing_newline(path)) { file(path) } else { path }) })("/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b0034014995/ex/synthetic_data.csv")`: '/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b0034014995/ex/synthetic_data.csv' does not exist.   Backtrace:       ▆    1. ├─readr::read_csv(file.path(ex, "synthetic_data.csv"), show_col_types = FALSE) at test-cli-execution.R:481:3    2. │ └─vroom::vroom(...)    3. │ └─vroom:::vroom_(...)    4. └─vroom (local) `<fn>`("/home/hornik/tmp/scratch/Rtmp3LfRfp/file175b0034014995/ex/synthetic_data.csv")    5. └─vroom:::check_path(path)    6. └─cli::cli_abort(msg, call = call)    7. └─rlang::abort(...)   ── Error ('test-export-synthetic.R:23:3'): export_synthetic() writes the full bundle file set ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger::export_synthetic(...) at test-export-synthetic.R:23:3    2. └─dataganger:::render_comparison_report(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-export-synthetic.R:112:3'): export_synthetic() folds guidance and privacy text into human/human.md ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger::export_synthetic(...) at test-export-synthetic.R:112:3    2. └─dataganger:::render_comparison_report(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-export-synthetic.R:253:3'): export_synthetic() sanitizes spreadsheet-dangerous cells ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger::export_synthetic(syn, path = out_dir, format = "dir") at test-export-synthetic.R:253:3    2. └─dataganger:::render_comparison_report(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-export-synthetic.R:274:3'): export_synthetic() warns but succeeds on exact-row matches by default ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:        ▆     1. ├─testthat::expect_warning(...) at test-export-synthetic.R:274:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─dataganger::export_synthetic(...)     8. └─dataganger:::render_comparison_report(...)     9. └─rmarkdown::render(...)    10. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    11. └─xfun::write_utf8(res, output)    12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    13. └─base::file(con, "w")   ── Error ('test-export-synthetic.R:334:3'): export_synthetic() writes zip output ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger::export_synthetic(...) at test-export-synthetic.R:334:3    2. └─dataganger:::render_comparison_report(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:24:3'): manifest.json contains Lens source field ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test() at test-manifest-lens.R:24:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:29:3'): manifest.json contains original_rows_bucket when original is supplied ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test(n = 10L) at test-manifest-lens.R:29:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:35:3'): manifest.json contains original_columns_count when original is supplied ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test(n = 10L) at test-manifest-lens.R:35:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:40:3'): manifest.json raw_rows_included is always false ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test() at test-manifest-lens.R:40:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:45:3'): manifest.json free_text_included is always false ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test() at test-manifest-lens.R:45:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:50:3'): manifest.json ids_included is always false ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test() at test-manifest-lens.R:50:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:62:3'): manifest.json plots_included is true when the comparison report is written ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test(include_report = TRUE) at test-manifest-lens.R:62:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:67:3'): manifest.json factor_levels_included is true for marginal synthesis ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test(purpose = "development") at test-manifest-lens.R:67:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:77:3'): manifest.json factor_levels_included is false for schema synthesis ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger::export_synthetic(...) at test-manifest-lens.R:77:3    2. └─dataganger:::render_comparison_report(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:87:3'): manifest.json numeric_ranges_included is always false ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test() at test-manifest-lens.R:87:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:92:3'): manifest.json policy_file is null ──────   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger (local) make_manifest_for_test() at test-manifest-lens.R:92:3    2. └─dataganger::export_synthetic(...) at test-manifest-lens.R:14:3    3. └─dataganger:::render_comparison_report(...)    4. └─rmarkdown::render(...)    5. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    6. └─xfun::write_utf8(res, output)    7. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    8. └─base::file(con, "w")   ── Error ('test-manifest-lens.R:102:3'): manifest.json original_rows_bucket is null when original not supplied ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─dataganger::export_synthetic(synthetic, path = out, format = "zip") at test-manifest-lens.R:102:3    2. └─dataganger:::render_comparison_report(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-mod-export.R:30:5'): download filename is a seeded bundle zip ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:        ▆     1. ├─shiny::testServer(...) at test-mod-export.R:29:3     2. │ ├─shiny:::withMockContext(...)     3. │ │ ├─shiny::isolate(...)     4. │ │ │ ├─shiny::..stacktraceoff..(...)     5. │ │ │ └─ctx$run(...)     6. │ │ │ ├─promises::with_promise_domain(...)     7. │ │ │ │ └─domain$wrapSync(expr)     8. │ │ │ ├─shiny::withReactiveDomain(...)     9. │ │ │ │ └─promises::with_promise_domain(...)    10. │ │ │ │ └─domain$wrapSync(expr)    11. │ │ │ │ └─base::force(expr)    12. │ │ │ ├─shiny:::with_otel_span_context(...)    13. │ │ │ │ └─base::force(expr)    14. │ │ │ ├─shiny::captureStackTraces(...)    15. │ │ │ │ └─promises::with_promise_domain(...)    16. │ │ │ │ └─domain$wrapSync(expr)    17. │ │ │ │ └─base::withCallingHandlers(expr, error = doCaptureStack)    18. │ │ │ └─env$runWith(self, func)    19. │ │ │ └─shiny (local) contextFunc()    20. │ │ │ └─shiny::..stacktraceon..(expr)    21. │ │ ├─shiny::withReactiveDomain(...)    22. │ │ │ └─promises::with_promise_domain(...)    23. │ │ │ └─domain$wrapSync(expr)    24. │ │ │ └─base::force(expr)    25. │ │ └─withr::with_options(...)    26. │ │ └─base::force(code)    27. │ └─rlang::eval_tidy(quosure, mask, rlang::caller_env())    28. ├─testthat::expect_match(output$download, "synthetic_data_seed1_bundle\\.zip$") at test-mod-export.R:30:5    29. │ └─testthat::quasi_label(enquo(object), label)    30. │ └─rlang::eval_bare(expr, quo_get_env(quo))    31. ├─output$download    32. ├─shiny:::`$.shinyoutput`(output, download)    33. │ └─.subset2(x, "impl")$getOutput(name)    34. │ └─private$renderFile(self$ns(name), download)    35. │ └─download$content(file)    36. │ └─base::tryCatch(...)    37. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    38. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    39. │ └─value[[3L]](cond)    40. │ └─base::stop(e)    41. └─shiny (local) `<fn>`(`<smplErrr>`)   ── Error ('test-mod-export.R:40:5'): download filename reflects state$seed_used ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:        ▆     1. ├─shiny::testServer(...) at test-mod-export.R:39:3     2. │ ├─shiny:::withMockContext(...)     3. │ │ ├─shiny::isolate(...)     4. │ │ │ ├─shiny::..stacktraceoff..(...)     5. │ │ │ └─ctx$run(...)     6. │ │ │ ├─promises::with_promise_domain(...)     7. │ │ │ │ └─domain$wrapSync(expr)     8. │ │ │ ├─shiny::withReactiveDomain(...)     9. │ │ │ │ └─promises::with_promise_domain(...)    10. │ │ │ │ └─domain$wrapSync(expr)    11. │ │ │ │ └─base::force(expr)    12. │ │ │ ├─shiny:::with_otel_span_context(...)    13. │ │ │ │ └─base::force(expr)    14. │ │ │ ├─shiny::captureStackTraces(...)    15. │ │ │ │ └─promises::with_promise_domain(...)    16. │ │ │ │ └─domain$wrapSync(expr)    17. │ │ │ │ └─base::withCallingHandlers(expr, error = doCaptureStack)    18. │ │ │ └─env$runWith(self, func)    19. │ │ │ └─shiny (local) contextFunc()    20. │ │ │ └─shiny::..stacktraceon..(expr)    21. │ │ ├─shiny::withReactiveDomain(...)    22. │ │ │ └─promises::with_promise_domain(...)    23. │ │ │ └─domain$wrapSync(expr)    24. │ │ │ └─base::force(expr)    25. │ │ └─withr::with_options(...)    26. │ │ └─base::force(code)    27. │ └─rlang::eval_tidy(quosure, mask, rlang::caller_env())    28. ├─testthat::expect_match(output$download, "synthetic_data_seed12345_bundle\\.zip$") at test-mod-export.R:40:5    29. │ └─testthat::quasi_label(enquo(object), label)    30. │ └─rlang::eval_bare(expr, quo_get_env(quo))    31. ├─output$download    32. ├─shiny:::`$.shinyoutput`(output, download)    33. │ └─.subset2(x, "impl")$getOutput(name)    34. │ └─private$renderFile(self$ns(name), download)    35. │ └─download$content(file)    36. │ └─base::tryCatch(...)    37. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    38. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    39. │ └─value[[3L]](cond)    40. │ └─base::stop(e)    41. └─shiny (local) `<fn>`(`<smplErrr>`)   ── Error ('test-mod-export.R:156:5'): module export manifest hashes match after post-generation spec edits ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:        ▆     1. ├─shiny::testServer(...) at test-mod-export.R:155:3     2. │ ├─shiny:::withMockContext(...)     3. │ │ ├─shiny::isolate(...)     4. │ │ │ ├─shiny::..stacktraceoff..(...)     5. │ │ │ └─ctx$run(...)     6. │ │ │ ├─promises::with_promise_domain(...)     7. │ │ │ │ └─domain$wrapSync(expr)     8. │ │ │ ├─shiny::withReactiveDomain(...)     9. │ │ │ │ └─promises::with_promise_domain(...)    10. │ │ │ │ └─domain$wrapSync(expr)    11. │ │ │ │ └─base::force(expr)    12. │ │ │ ├─shiny:::with_otel_span_context(...)    13. │ │ │ │ └─base::force(expr)    14. │ │ │ ├─shiny::captureStackTraces(...)    15. │ │ │ │ └─promises::with_promise_domain(...)    16. │ │ │ │ └─domain$wrapSync(expr)    17. │ │ │ │ └─base::withCallingHandlers(expr, error = doCaptureStack)    18. │ │ │ └─env$runWith(self, func)    19. │ │ │ └─shiny (local) contextFunc()    20. │ │ │ └─shiny::..stacktraceon..(expr)    21. │ │ ├─shiny::withReactiveDomain(...)    22. │ │ │ └─promises::with_promise_domain(...)    23. │ │ │ └─domain$wrapSync(expr)    24. │ │ │ └─base::force(expr)    25. │ │ └─withr::with_options(...)    26. │ │ └─base::force(code)    27. │ └─rlang::eval_tidy(quosure, mask, rlang::caller_env())    28. ├─dataganger (local) build_export(out_dir) at test-mod-export.R:156:5    29. │ └─dataganger::export_synthetic(...)    30. │ └─dataganger:::render_comparison_report(...)    31. │ └─rmarkdown::render(...)    32. │ └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    33. │ └─xfun::write_utf8(res, output)    34. │ └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    35. │ └─base::file(con, "w")    36. └─base::.handleSimpleError(...)    37. └─shiny (local) h(simpleError(msg, call))   ── Error ('test-mod-export.R:215:5'): export module records acknowledgment and clears blockers once approved ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:        ▆     1. ├─shiny::testServer(...) at test-mod-export.R:213:3     2. │ ├─shiny:::withMockContext(...)     3. │ │ ├─shiny::isolate(...)     4. │ │ │ ├─shiny::..stacktraceoff..(...)     5. │ │ │ └─ctx$run(...)     6. │ │ │ ├─promises::with_promise_domain(...)     7. │ │ │ │ └─domain$wrapSync(expr)     8. │ │ │ ├─shiny::withReactiveDomain(...)     9. │ │ │ │ └─promises::with_promise_domain(...)    10. │ │ │ │ └─domain$wrapSync(expr)    11. │ │ │ │ └─base::force(expr)    12. │ │ │ ├─shiny:::with_otel_span_context(...)    13. │ │ │ │ └─base::force(expr)    14. │ │ │ ├─shiny::captureStackTraces(...)    15. │ │ │ │ └─promises::with_promise_domain(...)    16. │ │ │ │ └─domain$wrapSync(expr)    17. │ │ │ │ └─base::withCallingHandlers(expr, error = doCaptureStack)    18. │ │ │ └─env$runWith(self, func)    19. │ │ │ └─shiny (local) contextFunc()    20. │ │ │ └─shiny::..stacktraceon..(expr)    21. │ │ ├─shiny::withReactiveDomain(...)    22. │ │ │ └─promises::with_promise_domain(...)    23. │ │ │ └─domain$wrapSync(expr)    24. │ │ │ └─base::force(expr)    25. │ │ └─withr::with_options(...)    26. │ │ └─base::force(code)    27. │ └─rlang::eval_tidy(quosure, mask, rlang::caller_env())    28. ├─dataganger (local) build_export(out_dir) at test-mod-export.R:215:5    29. │ └─dataganger::export_synthetic(...)    30. │ └─dataganger:::render_comparison_report(...)    31. │ └─rmarkdown::render(...)    32. │ └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    33. │ └─xfun::write_utf8(res, output)    34. │ └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    35. │ └─base::file(con, "w")    36. └─base::.handleSimpleError(...)    37. └─shiny (local) h(simpleError(msg, call))      [ FAIL 46 | WARN 42 | SKIP 11 | PASS 1251 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR