• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 14:15:44 UTC
• checking for file ‘dartR.popgen/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘dartR.popgen’ version ‘1.2.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘dartR.popgen’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [10s/15s] OK
• checking whether the package can be loaded with stated dependencies ... [10s/12s] OK
• checking whether the package can be unloaded cleanly ... [9s/12s] OK
• checking whether the namespace can be loaded with stated dependencies ... [9s/12s] OK
• checking whether the namespace can be unloaded cleanly ... [9s/11s] OK
• checking loading without being on the library search path ... [9s/12s] OK
• checking whether startup messages can be suppressed ... [9s/11s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [51s/63s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [28s/30s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed gl.ld.haplotype 5.01 0.415 5.663
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp04UpgN’ ‘~/tmp/scratch/Rtmp0q0FAE’   ‘~/tmp/scratch/Rtmp0xL640’ ‘~/tmp/scratch/Rtmp2GZiQ2’   ‘~/tmp/scratch/Rtmp2HQbe2’ ‘~/tmp/scratch/Rtmp421SMP’   ‘~/tmp/scratch/Rtmp4F7Ngi’ ‘~/tmp/scratch/Rtmp4H3r3m’   ‘~/tmp/scratch/Rtmp4dXpRk’ ‘~/tmp/scratch/Rtmp4egpMW’   ‘~/tmp/scratch/Rtmp5JmxV0’ ‘~/tmp/scratch/Rtmp5MuHvZ’   ‘~/tmp/scratch/Rtmp5W2Xyp’ ‘~/tmp/scratch/Rtmp5a9N8S’   ‘~/tmp/scratch/Rtmp69PESn’ ‘~/tmp/scratch/Rtmp6nlsRm’   ‘~/tmp/scratch/Rtmp7OERBT’ ‘~/tmp/scratch/Rtmp7Z8bUQ’   ‘~/tmp/scratch/Rtmp86wbr1’ ‘~/tmp/scratch/Rtmp8cIpVC’   ‘~/tmp/scratch/Rtmp8wJEVv’ ‘~/tmp/scratch/Rtmp8x4QOm’   ‘~/tmp/scratch/Rtmp91tdXY’ ‘~/tmp/scratch/RtmpABGuW9’   ‘~/tmp/scratch/RtmpAGuqYY’ ‘~/tmp/scratch/RtmpAmK1Ae’   ‘~/tmp/scratch/RtmpBexpAE’ ‘~/tmp/scratch/RtmpC0gZ1N’   ‘~/tmp/scratch/RtmpCDMcNv’ ‘~/tmp/scratch/RtmpCnjJVq’   ‘~/tmp/scratch/RtmpD4f47Q’ ‘~/tmp/scratch/RtmpDGtC3K’   ‘~/tmp/scratch/RtmpDIXmGU’ ‘~/tmp/scratch/RtmpDOwMyb’   ‘~/tmp/scratch/RtmpDo93Eb’ ‘~/tmp/scratch/RtmpEDwIOi’   ‘~/tmp/scratch/RtmpEHfqvU’ ‘~/tmp/scratch/RtmpEIEFnQ’   ‘~/tmp/scratch/RtmpEIikNV’ ‘~/tmp/scratch/RtmpEtW9XU’   ‘~/tmp/scratch/RtmpEvp1GM’ ‘~/tmp/scratch/RtmpF9wBgQ’   ‘~/tmp/scratch/RtmpFbgBqM’ ‘~/tmp/scratch/RtmpFqMk45’   ‘~/tmp/scratch/RtmpG4k8LI’ ‘~/tmp/scratch/RtmpGSAKDe’   ‘~/tmp/scratch/RtmpGXI77s’ ‘~/tmp/scratch/RtmpHDF9A0’   ‘~/tmp/scratch/RtmpHXvTUI’ ‘~/tmp/scratch/RtmpHlbYiX’   ‘~/tmp/scratch/RtmpILXU7H’ ‘~/tmp/scratch/RtmpInFz2m’   ‘~/tmp/scratch/RtmpJ5ipQt’ ‘~/tmp/scratch/RtmpK3L0uR’   ‘~/tmp/scratch/RtmpK3w70q’ ‘~/tmp/scratch/RtmpKBDGV4’   ‘~/tmp/scratch/RtmpKBQSCT’ ‘~/tmp/scratch/RtmpKNcVH3’   ‘~/tmp/scratch/RtmpKXjIi0’ ‘~/tmp/scratch/RtmpL9Dufh’   ‘~/tmp/scratch/RtmpLGhPPH’ ‘~/tmp/scratch/RtmpLJJRQl’   ‘~/tmp/scratch/RtmpLNBEJ7’ ‘~/tmp/scratch/RtmpLZAGWO’   ‘~/tmp/scratch/RtmpMBiZSc’ ‘~/tmp/scratch/RtmpNS9Ze5’   ‘~/tmp/scratch/RtmpNeqayd’ ‘~/tmp/scratch/RtmpP1hD4c’   ‘~/tmp/scratch/RtmpP3t7Ok’ ‘~/tmp/scratch/RtmpPIdFSV’   ‘~/tmp/scratch/RtmpPWJFFW’ ‘~/tmp/scratch/RtmpPf6L7S’   ‘~/tmp/scratch/RtmpPujQMC’ ‘~/tmp/scratch/RtmpPvOYkZ’   ‘~/tmp/scratch/RtmpQ1OEOt’ ‘~/tmp/scratch/RtmpQGkbLc’   ‘~/tmp/scratch/RtmpQMM22K’ ‘~/tmp/scratch/RtmpQvjJQm’   ‘~/tmp/scratch/RtmpRLWXNa’ ‘~/tmp/scratch/RtmpSBuv8a’   ‘~/tmp/scratch/RtmpSFtiZ2’ ‘~/tmp/scratch/RtmpSW7NcO’   ‘~/tmp/scratch/RtmpSu359w’ ‘~/tmp/scratch/RtmpT25VDt’   ‘~/tmp/scratch/RtmpT8AMUP’ ‘~/tmp/scratch/RtmpTV4wND’   ‘~/tmp/scratch/RtmpThZt6U’ ‘~/tmp/scratch/RtmpTjFigP’   ‘~/tmp/scratch/RtmpUQOEpL’ ‘~/tmp/scratch/RtmpUXIb6n’   ‘~/tmp/scratch/RtmpUYVFsM’ ‘~/tmp/scratch/RtmpUh31Dh’   ‘~/tmp/scratch/RtmpUpnFnU’ ‘~/tmp/scratch/RtmpUtdAkc’   ‘~/tmp/scratch/RtmpVEEnP6’ ‘~/tmp/scratch/RtmpVtdhwD’   ‘~/tmp/scratch/RtmpXGbOlg’ ‘~/tmp/scratch/RtmpXiqwFw’   ‘~/tmp/scratch/RtmpYcsT7k’ ‘~/tmp/scratch/RtmpZ7VDJG’   ‘~/tmp/scratch/RtmpZZN01c’ ‘~/tmp/scratch/RtmpZoFeiO’   ‘~/tmp/scratch/RtmpavWLS2’ ‘~/tmp/scratch/RtmpbtjXHY’   ‘~/tmp/scratch/Rtmpc95RNJ’ ‘~/tmp/scratch/Rtmpd1mEuX’   ‘~/tmp/scratch/RtmpdCDC7q’ ‘~/tmp/scratch/RtmpdRhS4e’   ‘~/tmp/scratch/RtmpdUx9eS’ ‘~/tmp/scratch/RtmpdlVlAp’   ‘~/tmp/scratch/Rtmpf8kNKq’ ‘~/tmp/scratch/Rtmpg0hTRM’   ‘~/tmp/scratch/RtmpgOem01’ ‘~/tmp/scratch/RtmpgPrlS5’   ‘~/tmp/scratch/Rtmpgnfuob’ ‘~/tmp/scratch/Rtmphoi0Jt’   ‘~/tmp/scratch/RtmphxPd77’ ‘~/tmp/scratch/Rtmpimcp4E’   ‘~/tmp/scratch/RtmpiwmsPM’ ‘~/tmp/scratch/Rtmpj7PjkG’   ‘~/tmp/scratch/RtmpjDhbOX’ ‘~/tmp/scratch/RtmpjGNcoV’   ‘~/tmp/scratch/RtmpjHikmy’ ‘~/tmp/scratch/RtmpjVm3cr’   ‘~/tmp/scratch/RtmpjVtSPP’ ‘~/tmp/scratch/RtmpjWLnpE’   ‘~/tmp/scratch/Rtmpjz1LtF’ ‘~/tmp/scratch/RtmpkQiQYH’   ‘~/tmp/scratch/RtmpklUMI6’ ‘~/tmp/scratch/RtmpmCueAy’   ‘~/tmp/scratch/Rtmpn4QQiN’ ‘~/tmp/scratch/RtmpnCGK49’   ‘~/tmp/scratch/RtmpnNZkaF’ ‘~/tmp/scratch/RtmpnqHAhd’   ‘~/tmp/scratch/RtmpoM8gSM’ ‘~/tmp/scratch/RtmpoP07Uk’   ‘~/tmp/scratch/RtmpoPcitT’ ‘~/tmp/scratch/RtmpobkuM6’   ‘~/tmp/scratch/RtmpobrZRk’ ‘~/tmp/scratch/RtmpodYK3N’   ‘~/tmp/scratch/RtmppLVECD’ ‘~/tmp/scratch/RtmppQ0zKD’   ‘~/tmp/scratch/RtmppUmBdw’ ‘~/tmp/scratch/RtmpqCEax2’   ‘~/tmp/scratch/Rtmpqj42u8’ ‘~/tmp/scratch/RtmprVAPnw’   ‘~/tmp/scratch/Rtmps7sRlu’ ‘~/tmp/scratch/RtmpsCU0XG’   ‘~/tmp/scratch/RtmpsM4Tmi’ ‘~/tmp/scratch/RtmpsSOzba’   ‘~/tmp/scratch/RtmpsrrZ0a’ ‘~/tmp/scratch/RtmpsrxvxC’   ‘~/tmp/scratch/Rtmpt68xmk’ ‘~/tmp/scratch/RtmptPwrEX’   ‘~/tmp/scratch/RtmptmkxNj’ ‘~/tmp/scratch/RtmptnN2rl’   ‘~/tmp/scratch/RtmptxHbP7’ ‘~/tmp/scratch/RtmpuXV4aV’   ‘~/tmp/scratch/Rtmpv01em4’ ‘~/tmp/scratch/RtmpvTTbs1’   ‘~/tmp/scratch/RtmpvZzqVp’ ‘~/tmp/scratch/Rtmpw7fKSk’   ‘~/tmp/scratch/RtmpwHNr8R’ ‘~/tmp/scratch/RtmpwYmDGE’   ‘~/tmp/scratch/Rtmpwb7Epd’ ‘~/tmp/scratch/Rtmpx2QPJ3’   ‘~/tmp/scratch/RtmpxhBlUK’ ‘~/tmp/scratch/RtmpyqZF9A’   ‘~/tmp/scratch/Rtmpz4hTvG’ ‘~/tmp/scratch/Rtmpzc1bOQ’   ‘~/tmp/scratch/RtmpzdFYYU’ ‘~/tmp/scratch/RtmpzjBWJY’   ‘~/tmp/scratch/quarto-session927e4fa4830981ee’   ‘~/tmp/scratch/xvfb-run.02Lpr9’ ‘~/tmp/scratch/xvfb-run.0Yo5Cw’   ‘~/tmp/scratch/xvfb-run.13KC6e’ ‘~/tmp/scratch/xvfb-run.1NIZfl’   ‘~/tmp/scratch/xvfb-run.1UO4uX’ ‘~/tmp/scratch/xvfb-run.1x3EVA’   ‘~/tmp/scratch/xvfb-run.4BpU35’ ‘~/tmp/scratch/xvfb-run.5LbGKV’   ‘~/tmp/scratch/xvfb-run.5dUnr3’ ‘~/tmp/scratch/xvfb-run.5vyqfZ’   ‘~/tmp/scratch/xvfb-run.696Zxe’ ‘~/tmp/scratch/xvfb-run.7W3n3O’   ‘~/tmp/scratch/xvfb-run.7Xveul’ ‘~/tmp/scratch/xvfb-run.8ELqXD’   ‘~/tmp/scratch/xvfb-run.8sKPCM’ ‘~/tmp/scratch/xvfb-run.9bIw5s’   ‘~/tmp/scratch/xvfb-run.A5SIwB’ ‘~/tmp/scratch/xvfb-run.Aiwv2l’   ‘~/tmp/scratch/xvfb-run.FZyDeX’ ‘~/tmp/scratch/xvfb-run.I9yX2q’   ‘~/tmp/scratch/xvfb-run.J0Mdso’ ‘~/tmp/scratch/xvfb-run.KVqxNF’   ‘~/tmp/scratch/xvfb-run.Li42Ob’ ‘~/tmp/scratch/xvfb-run.OJKFg6’   ‘~/tmp/scratch/xvfb-run.OQQAV9’ ‘~/tmp/scratch/xvfb-run.OYY6r9’   ‘~/tmp/scratch/xvfb-run.OsUdKv’ ‘~/tmp/scratch/xvfb-run.PQVniO’   ‘~/tmp/scratch/xvfb-run.Qxqvv6’ ‘~/tmp/scratch/xvfb-run.RO1waR’   ‘~/tmp/scratch/xvfb-run.RxsGT1’ ‘~/tmp/scratch/xvfb-run.Sr3wpw’   ‘~/tmp/scratch/xvfb-run.TBgmsC’ ‘~/tmp/scratch/xvfb-run.TTQzrD’   ‘~/tmp/scratch/xvfb-run.TisDEQ’ ‘~/tmp/scratch/xvfb-run.VfhtAO’   ‘~/tmp/scratch/xvfb-run.XzNdo5’ ‘~/tmp/scratch/xvfb-run.YLfgpa’   ‘~/tmp/scratch/xvfb-run.aAsu7L’ ‘~/tmp/scratch/xvfb-run.auX19w’   ‘~/tmp/scratch/xvfb-run.bAX1C3’ ‘~/tmp/scratch/xvfb-run.bhSZic’   ‘~/tmp/scratch/xvfb-run.d2HUL4’ ‘~/tmp/scratch/xvfb-run.dMrWEJ’   ‘~/tmp/scratch/xvfb-run.fDRnD8’ ‘~/tmp/scratch/xvfb-run.fUGtPq’   ‘~/tmp/scratch/xvfb-run.heM5ID’ ‘~/tmp/scratch/xvfb-run.hkixBG’   ‘~/tmp/scratch/xvfb-run.iKFviv’ ‘~/tmp/scratch/xvfb-run.iWpyjI’   ‘~/tmp/scratch/xvfb-run.lfcLYY’ ‘~/tmp/scratch/xvfb-run.mA9M5k’   ‘~/tmp/scratch/xvfb-run.mPi4ol’ ‘~/tmp/scratch/xvfb-run.o185AE’   ‘~/tmp/scratch/xvfb-run.ooP43h’ ‘~/tmp/scratch/xvfb-run.p6Syyd’   ‘~/tmp/scratch/xvfb-run.pCOs4v’ ‘~/tmp/scratch/xvfb-run.pfosJv’   ‘~/tmp/scratch/xvfb-run.ph5bzM’ ‘~/tmp/scratch/xvfb-run.qE1O2g’   ‘~/tmp/scratch/xvfb-run.qRCqKF’ ‘~/tmp/scratch/xvfb-run.qwkFIZ’   ‘~/tmp/scratch/xvfb-run.slX813’ ‘~/tmp/scratch/xvfb-run.szxiSv’   ‘~/tmp/scratch/xvfb-run.tDUad2’ ‘~/tmp/scratch/xvfb-run.uLRTea’   ‘~/tmp/scratch/xvfb-run.vFAzIt’ ‘~/tmp/scratch/xvfb-run.vnAtyE’   ‘~/tmp/scratch/xvfb-run.wRhbKg’ ‘~/tmp/scratch/xvfb-run.wcj5Te’   ‘~/tmp/scratch/xvfb-run.xcuety’ ‘~/tmp/scratch/xvfb-run.ytevrK’   ‘/dev/shm/shd1721f6_6a6e00da_6a6e00e8’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00f6’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00f7’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00f8’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00f9’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00fa’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00fb’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00fc’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00fd’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00fe’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e00ff’   ‘/dev/shm/shd1721f6_6a6e00dc_6a6e0100’
• DONE

Status: 1 NOTE