• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:14:03 UTC
• checking for file ‘cytominer/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘cytominer’ version ‘0.2.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘cytominer’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/21s] OK   Running ‘testthat.R’ [16s/20s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/9s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp03itHA’ ‘~/tmp/scratch/Rtmp0VxLXj’   ‘~/tmp/scratch/Rtmp0bGIAY’ ‘~/tmp/scratch/Rtmp0umuWX’   ‘~/tmp/scratch/Rtmp1nH8ex’ ‘~/tmp/scratch/Rtmp21ka9l’   ‘~/tmp/scratch/Rtmp2ONjiN’ ‘~/tmp/scratch/Rtmp2ydpjd’   ‘~/tmp/scratch/Rtmp4Bjref’ ‘~/tmp/scratch/Rtmp4kOBc3’   ‘~/tmp/scratch/Rtmp5BOQoh’ ‘~/tmp/scratch/Rtmp5ot1Oq’   ‘~/tmp/scratch/Rtmp6AOooo’ ‘~/tmp/scratch/Rtmp6pW2ut’   ‘~/tmp/scratch/Rtmp6wDDmM’ ‘~/tmp/scratch/Rtmp6z93zQ’   ‘~/tmp/scratch/Rtmp7QXEip’ ‘~/tmp/scratch/Rtmp8DIuel’   ‘~/tmp/scratch/Rtmp8GC46g’ ‘~/tmp/scratch/Rtmp8fOLj4’   ‘~/tmp/scratch/Rtmp9EPNZI’ ‘~/tmp/scratch/Rtmp9LAjCD’   ‘~/tmp/scratch/RtmpBUJIJH’ ‘~/tmp/scratch/RtmpBgW6x8’   ‘~/tmp/scratch/RtmpBjnXYY’ ‘~/tmp/scratch/RtmpCAFyE2’   ‘~/tmp/scratch/RtmpCSKd6x’ ‘~/tmp/scratch/RtmpCZhds9’   ‘~/tmp/scratch/RtmpCZiifv’ ‘~/tmp/scratch/RtmpChB9TQ’   ‘~/tmp/scratch/RtmpD0WtZD’ ‘~/tmp/scratch/RtmpDLSGQn’   ‘~/tmp/scratch/RtmpEMQWSA’ ‘~/tmp/scratch/RtmpEPH6ax’   ‘~/tmp/scratch/RtmpEWj0jN’ ‘~/tmp/scratch/RtmpEeIj3A’   ‘~/tmp/scratch/RtmpEjvd5T’ ‘~/tmp/scratch/RtmpEkABJm’   ‘~/tmp/scratch/RtmpFQrYJy’ ‘~/tmp/scratch/RtmpFWpttW’   ‘~/tmp/scratch/RtmpFr5817’ ‘~/tmp/scratch/RtmpGKiAEZ’   ‘~/tmp/scratch/RtmpHC1ayt’ ‘~/tmp/scratch/RtmpHEbIcK’   ‘~/tmp/scratch/RtmpHX2k05’ ‘~/tmp/scratch/RtmpIMBQA0’   ‘~/tmp/scratch/RtmpIN29To’ ‘~/tmp/scratch/RtmpIaT3Ka’   ‘~/tmp/scratch/RtmpJ25lmB’ ‘~/tmp/scratch/RtmpKKMkFo’   ‘~/tmp/scratch/RtmpKQXZ0H’ ‘~/tmp/scratch/RtmpKSnaas’   ‘~/tmp/scratch/RtmpLsNyyY’ ‘~/tmp/scratch/RtmpLvbeqQ’   ‘~/tmp/scratch/RtmpMaTWqq’ ‘~/tmp/scratch/RtmpN8wSOd’   ‘~/tmp/scratch/RtmpNWsKH5’ ‘~/tmp/scratch/RtmpNZEcdO’   ‘~/tmp/scratch/RtmpNalLd1’ ‘~/tmp/scratch/RtmpOI8Vd9’   ‘~/tmp/scratch/RtmpPZRGZg’ ‘~/tmp/scratch/RtmpQ5chNT’   ‘~/tmp/scratch/RtmpQuVAHa’ ‘~/tmp/scratch/RtmpRnJOn2’   ‘~/tmp/scratch/RtmpS803rD’ ‘~/tmp/scratch/RtmpSkC2kZ’   ‘~/tmp/scratch/RtmpTzEfYS’ ‘~/tmp/scratch/RtmpUgz1gK’   ‘~/tmp/scratch/RtmpWDj4Ob’ ‘~/tmp/scratch/RtmpWLWLKZ’   ‘~/tmp/scratch/RtmpWXwVx8’ ‘~/tmp/scratch/RtmpWnxglj’   ‘~/tmp/scratch/RtmpWwUuUg’ ‘~/tmp/scratch/RtmpXY9N6e’   ‘~/tmp/scratch/RtmpXhr9bI’ ‘~/tmp/scratch/RtmpXloNpO’   ‘~/tmp/scratch/RtmpYu8tJt’ ‘~/tmp/scratch/RtmpZN5q0j’   ‘~/tmp/scratch/RtmpZbQTZt’ ‘~/tmp/scratch/RtmpZy4ByS’   ‘~/tmp/scratch/RtmpaAWI12’ ‘~/tmp/scratch/RtmpbIX8fU’   ‘~/tmp/scratch/RtmpbOqepG’ ‘~/tmp/scratch/Rtmpbl3j1Y’   ‘~/tmp/scratch/RtmpdGPPzp’ ‘~/tmp/scratch/RtmpdqcrMD’   ‘~/tmp/scratch/RtmpeGumLl’ ‘~/tmp/scratch/Rtmpecg2On’   ‘~/tmp/scratch/Rtmped8Rji’ ‘~/tmp/scratch/RtmpeqbtOx’   ‘~/tmp/scratch/RtmperUIvS’ ‘~/tmp/scratch/RtmpfAW9k0’   ‘~/tmp/scratch/Rtmpfg8MiA’ ‘~/tmp/scratch/Rtmpg0mAcN’   ‘~/tmp/scratch/RtmpgRR3b1’ ‘~/tmp/scratch/Rtmph0EfNk’   ‘~/tmp/scratch/Rtmph4vh85’ ‘~/tmp/scratch/Rtmph9B5Ru’   ‘~/tmp/scratch/RtmphP6axF’ ‘~/tmp/scratch/RtmphPFFTe’   ‘~/tmp/scratch/RtmphsC07v’ ‘~/tmp/scratch/Rtmpi0qW5I’   ‘~/tmp/scratch/Rtmpjpg4Ng’ ‘~/tmp/scratch/Rtmpk9wKXA’   ‘~/tmp/scratch/RtmpkCHI3W’ ‘~/tmp/scratch/RtmpkOPKUl’   ‘~/tmp/scratch/RtmplhQa9D’ ‘~/tmp/scratch/RtmplwvYO9’   ‘~/tmp/scratch/Rtmpm6D6uk’ ‘~/tmp/scratch/Rtmpn4SIul’   ‘~/tmp/scratch/RtmpnGSAPp’ ‘~/tmp/scratch/RtmpnGjmIW’   ‘~/tmp/scratch/RtmpnMMgvO’ ‘~/tmp/scratch/RtmpnoFC8q’   ‘~/tmp/scratch/Rtmpo9G1tS’ ‘~/tmp/scratch/RtmpoRNolV’   ‘~/tmp/scratch/Rtmpp3etC9’ ‘~/tmp/scratch/RtmppIQ4bg’   ‘~/tmp/scratch/RtmppRWKGv’ ‘~/tmp/scratch/RtmppemxgP’   ‘~/tmp/scratch/Rtmppt17y0’ ‘~/tmp/scratch/Rtmpqq77QI’   ‘~/tmp/scratch/RtmprlkMPn’ ‘~/tmp/scratch/RtmpsJSAwB’   ‘~/tmp/scratch/RtmpsSoUnQ’ ‘~/tmp/scratch/RtmpsjSXSv’   ‘~/tmp/scratch/Rtmpt61Hz9’ ‘~/tmp/scratch/RtmptI6atm’   ‘~/tmp/scratch/RtmptU7Yoq’ ‘~/tmp/scratch/RtmpthbeZm’   ‘~/tmp/scratch/RtmpuFEGsA’ ‘~/tmp/scratch/RtmpuVfixl’   ‘~/tmp/scratch/RtmpupWVgO’ ‘~/tmp/scratch/RtmpvXMGVX’   ‘~/tmp/scratch/RtmpviJd82’ ‘~/tmp/scratch/Rtmpwd3cO0’   ‘~/tmp/scratch/Rtmpx0LjVd’ ‘~/tmp/scratch/RtmpxEbmvn’   ‘~/tmp/scratch/Rtmpxxrawh’ ‘~/tmp/scratch/RtmpyuH1Bw’   ‘~/tmp/scratch/RtmpzRth5E’ ‘~/tmp/scratch/RtmpzWgV3l’   ‘~/tmp/scratch/xvfb-run.0mannP’ ‘~/tmp/scratch/xvfb-run.2ryRjC’   ‘~/tmp/scratch/xvfb-run.4z3zfi’ ‘~/tmp/scratch/xvfb-run.7QoqPu’   ‘~/tmp/scratch/xvfb-run.8QyJvb’ ‘~/tmp/scratch/xvfb-run.9ldWRJ’   ‘~/tmp/scratch/xvfb-run.9ulG6y’ ‘~/tmp/scratch/xvfb-run.C9SeAI’   ‘~/tmp/scratch/xvfb-run.CFXkjQ’ ‘~/tmp/scratch/xvfb-run.EouaZU’   ‘~/tmp/scratch/xvfb-run.HwVhmw’ ‘~/tmp/scratch/xvfb-run.IE5prk’   ‘~/tmp/scratch/xvfb-run.Jav1rX’ ‘~/tmp/scratch/xvfb-run.Lxg0qt’   ‘~/tmp/scratch/xvfb-run.MhuT5B’ ‘~/tmp/scratch/xvfb-run.OaX7J1’   ‘~/tmp/scratch/xvfb-run.P2covS’ ‘~/tmp/scratch/xvfb-run.RT2KDr’   ‘~/tmp/scratch/xvfb-run.SvwWcV’ ‘~/tmp/scratch/xvfb-run.TVGF7M’   ‘~/tmp/scratch/xvfb-run.Vt1W5B’ ‘~/tmp/scratch/xvfb-run.XUDdNF’   ‘~/tmp/scratch/xvfb-run.XYk4Ci’ ‘~/tmp/scratch/xvfb-run.XrF3Fq’   ‘~/tmp/scratch/xvfb-run.YAwhWt’ ‘~/tmp/scratch/xvfb-run.YTOEVU’   ‘~/tmp/scratch/xvfb-run.YiK2J1’ ‘~/tmp/scratch/xvfb-run.YyV1gv’   ‘~/tmp/scratch/xvfb-run.Z3S5We’ ‘~/tmp/scratch/xvfb-run.b1Pid8’   ‘~/tmp/scratch/xvfb-run.bA14J1’ ‘~/tmp/scratch/xvfb-run.bS84pu’   ‘~/tmp/scratch/xvfb-run.bxMbfU’ ‘~/tmp/scratch/xvfb-run.dAOU5B’   ‘~/tmp/scratch/xvfb-run.dUYwCq’ ‘~/tmp/scratch/xvfb-run.eRpyYL’   ‘~/tmp/scratch/xvfb-run.ft6GrA’ ‘~/tmp/scratch/xvfb-run.jQ1L3W’   ‘~/tmp/scratch/xvfb-run.kFc1OA’ ‘~/tmp/scratch/xvfb-run.ktp4SA’   ‘~/tmp/scratch/xvfb-run.kzPdaD’ ‘~/tmp/scratch/xvfb-run.mCDnWp’   ‘~/tmp/scratch/xvfb-run.nuXPQp’ ‘~/tmp/scratch/xvfb-run.qB2PQ4’   ‘~/tmp/scratch/xvfb-run.qKrWXu’ ‘~/tmp/scratch/xvfb-run.rzqAUM’   ‘~/tmp/scratch/xvfb-run.uQci9Y’ ‘~/tmp/scratch/xvfb-run.vrAMIS’   ‘~/tmp/scratch/xvfb-run.w4B0AW’ ‘~/tmp/scratch/xvfb-run.w5up4M’   ‘~/tmp/scratch/xvfb-run.xRH6o4’ ‘~/tmp/scratch/xvfb-run.xpFgog’   ‘~/tmp/scratch/xvfb-run.zyVews’
• DONE

Status: 1 NOTE