• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 14:10:10 UTC
• checking for file ‘cpp11bigwig/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘cpp11bigwig’ version ‘0.3.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘cpp11bigwig’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/15s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking include directives in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/5s] OK   Running ‘testthat.R’ [4s/5s]
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1lEYCu’ ‘~/tmp/scratch/Rtmp21R8FQ’   ‘~/tmp/scratch/Rtmp2Uikxa’ ‘~/tmp/scratch/Rtmp2Z8sIx’   ‘~/tmp/scratch/Rtmp2a2dyC’ ‘~/tmp/scratch/Rtmp2dHYfJ’   ‘~/tmp/scratch/Rtmp2m7heB’ ‘~/tmp/scratch/Rtmp2mhqgq’   ‘~/tmp/scratch/Rtmp2pleGL’ ‘~/tmp/scratch/Rtmp2qixlh’   ‘~/tmp/scratch/Rtmp32L11E’ ‘~/tmp/scratch/Rtmp3ZUJze’   ‘~/tmp/scratch/Rtmp48TThP’ ‘~/tmp/scratch/Rtmp4bco7v’   ‘~/tmp/scratch/Rtmp6R03ik’ ‘~/tmp/scratch/Rtmp6qJ8OD’   ‘~/tmp/scratch/Rtmp7UuKi1’ ‘~/tmp/scratch/Rtmp8Kw275’   ‘~/tmp/scratch/Rtmp8NSBYf’ ‘~/tmp/scratch/Rtmp8edqjE’   ‘~/tmp/scratch/Rtmp8maHGx’ ‘~/tmp/scratch/Rtmp9FGn9u’   ‘~/tmp/scratch/Rtmp9cXgM9’ ‘~/tmp/scratch/RtmpA3ewaY’   ‘~/tmp/scratch/RtmpAiJneV’ ‘~/tmp/scratch/RtmpAixTnL’   ‘~/tmp/scratch/RtmpB3KyzM’ ‘~/tmp/scratch/RtmpB74EJT’   ‘~/tmp/scratch/RtmpBI96OZ’ ‘~/tmp/scratch/RtmpBiH1LP’   ‘~/tmp/scratch/RtmpBs2Zyb’ ‘~/tmp/scratch/RtmpCG1lSa’   ‘~/tmp/scratch/RtmpCU4xa4’ ‘~/tmp/scratch/RtmpCn8ttr’   ‘~/tmp/scratch/RtmpD1Oq1q’ ‘~/tmp/scratch/RtmpDJAVPy’   ‘~/tmp/scratch/RtmpDYke7A’ ‘~/tmp/scratch/RtmpEIU0yp’   ‘~/tmp/scratch/RtmpERTxRf’ ‘~/tmp/scratch/RtmpEZS4p8’   ‘~/tmp/scratch/RtmpEf95qv’ ‘~/tmp/scratch/RtmpEpkhV9’   ‘~/tmp/scratch/RtmpEv0GdY’ ‘~/tmp/scratch/RtmpFJptPZ’   ‘~/tmp/scratch/RtmpG0gXUR’ ‘~/tmp/scratch/RtmpGfSGj1’   ‘~/tmp/scratch/RtmpGs47bZ’ ‘~/tmp/scratch/RtmpIWF8jO’   ‘~/tmp/scratch/RtmpJTeR9Y’ ‘~/tmp/scratch/RtmpJbsLwc’   ‘~/tmp/scratch/RtmpKfsf70’ ‘~/tmp/scratch/RtmpLKIbj6’   ‘~/tmp/scratch/RtmpM0AKcC’ ‘~/tmp/scratch/RtmpMKjdmK’   ‘~/tmp/scratch/RtmpMYxUC0’ ‘~/tmp/scratch/RtmpMw9X0N’   ‘~/tmp/scratch/RtmpNkny3V’ ‘~/tmp/scratch/RtmpOXnZ0q’   ‘~/tmp/scratch/RtmpPF85hn’ ‘~/tmp/scratch/RtmpPbg4st’   ‘~/tmp/scratch/RtmpPxnJHm’ ‘~/tmp/scratch/RtmpQzyvkc’   ‘~/tmp/scratch/RtmpReATKj’ ‘~/tmp/scratch/RtmpRrcIEs’   ‘~/tmp/scratch/RtmpS8w42m’ ‘~/tmp/scratch/RtmpSvsjcp’   ‘~/tmp/scratch/RtmpT0oyrz’ ‘~/tmp/scratch/RtmpTAAifu’   ‘~/tmp/scratch/RtmpTYmWST’ ‘~/tmp/scratch/RtmpTfPy47’   ‘~/tmp/scratch/RtmpTgmpq6’ ‘~/tmp/scratch/RtmpTrB1v9’   ‘~/tmp/scratch/RtmpUZVzzX’ ‘~/tmp/scratch/RtmpV4rQoY’   ‘~/tmp/scratch/RtmpV7HbzZ’ ‘~/tmp/scratch/RtmpWApaol’   ‘~/tmp/scratch/RtmpWISE23’ ‘~/tmp/scratch/RtmpWPExaO’   ‘~/tmp/scratch/RtmpWkYSW7’ ‘~/tmp/scratch/RtmpXPuIEN’   ‘~/tmp/scratch/RtmpXovTnv’ ‘~/tmp/scratch/RtmpYUXAoi’   ‘~/tmp/scratch/RtmpYcNC5G’ ‘~/tmp/scratch/RtmpZ0MzH7’   ‘~/tmp/scratch/Rtmpat63Gx’ ‘~/tmp/scratch/RtmpawxVsj’   ‘~/tmp/scratch/Rtmpb8hTqE’ ‘~/tmp/scratch/RtmpbIphZJ’   ‘~/tmp/scratch/RtmpbPko4a’ ‘~/tmp/scratch/Rtmpbfyoxn’   ‘~/tmp/scratch/RtmpcPNsOU’ ‘~/tmp/scratch/RtmpcXSX2H’   ‘~/tmp/scratch/Rtmpch5keA’ ‘~/tmp/scratch/RtmpdAZ4AF’   ‘~/tmp/scratch/RtmpdaQPq7’ ‘~/tmp/scratch/Rtmpdv4zpL’   ‘~/tmp/scratch/RtmpeF6g0X’ ‘~/tmp/scratch/RtmpeIgaUo’   ‘~/tmp/scratch/Rtmpf9256G’ ‘~/tmp/scratch/RtmpfI1tuO’   ‘~/tmp/scratch/RtmpfYq2bB’ ‘~/tmp/scratch/RtmpfjZxGH’   ‘~/tmp/scratch/RtmpfkH57c’ ‘~/tmp/scratch/RtmpgED83A’   ‘~/tmp/scratch/RtmpgPhqJA’ ‘~/tmp/scratch/Rtmpi7qkvN’   ‘~/tmp/scratch/RtmpiiZVGf’ ‘~/tmp/scratch/RtmpirOd5n’   ‘~/tmp/scratch/RtmpiszqWk’ ‘~/tmp/scratch/RtmpitYwqx’   ‘~/tmp/scratch/Rtmpj2W9y7’ ‘~/tmp/scratch/RtmpjTamCP’   ‘~/tmp/scratch/RtmpkQZezi’ ‘~/tmp/scratch/RtmpkUBxCE’   ‘~/tmp/scratch/RtmpkeK5P3’ ‘~/tmp/scratch/RtmpkxNeAu’   ‘~/tmp/scratch/RtmpkxhAQP’ ‘~/tmp/scratch/RtmplNNlmy’   ‘~/tmp/scratch/Rtmpm7I3Yt’ ‘~/tmp/scratch/Rtmpn794iJ’   ‘~/tmp/scratch/RtmpnbN0iN’ ‘~/tmp/scratch/RtmpnkrzNR’   ‘~/tmp/scratch/Rtmpou35ry’ ‘~/tmp/scratch/RtmpoxHDeM’   ‘~/tmp/scratch/RtmppTP7YK’ ‘~/tmp/scratch/Rtmpq0awsH’   ‘~/tmp/scratch/RtmpqKjmqK’ ‘~/tmp/scratch/RtmpqPvwF0’   ‘~/tmp/scratch/RtmpqbxN94’ ‘~/tmp/scratch/RtmpsK9BD9’   ‘~/tmp/scratch/Rtmpso4mdb’ ‘~/tmp/scratch/RtmpspsCfr’   ‘~/tmp/scratch/Rtmpss5Q7D’ ‘~/tmp/scratch/Rtmpt76cI8’   ‘~/tmp/scratch/RtmptL2OGu’ ‘~/tmp/scratch/RtmptXCN7C’   ‘~/tmp/scratch/RtmptcX16O’ ‘~/tmp/scratch/Rtmptfhtdu’   ‘~/tmp/scratch/Rtmpu4A2lo’ ‘~/tmp/scratch/RtmpuJLpKh’   ‘~/tmp/scratch/RtmpunuXwp’ ‘~/tmp/scratch/Rtmpuuh8mC’   ‘~/tmp/scratch/Rtmpv78hJ8’ ‘~/tmp/scratch/RtmpvV8I4E’   ‘~/tmp/scratch/RtmpwCZass’ ‘~/tmp/scratch/RtmpwWX6PV’   ‘~/tmp/scratch/Rtmpwnc6ST’ ‘~/tmp/scratch/RtmpxAXee2’   ‘~/tmp/scratch/RtmpxDgmLl’ ‘~/tmp/scratch/RtmpxEO7U0’   ‘~/tmp/scratch/Rtmpxa4gDG’ ‘~/tmp/scratch/RtmpxjUXmd’   ‘~/tmp/scratch/RtmpxjdKbT’ ‘~/tmp/scratch/Rtmpy55JxN’   ‘~/tmp/scratch/Rtmpy8kGiC’ ‘~/tmp/scratch/RtmpyWolUJ’   ‘~/tmp/scratch/RtmpzXbIPP’ ‘~/tmp/scratch/ccF8qkLq.s’   ‘~/tmp/scratch/quarto-sessionabecdfdbfff58f23’   ‘~/tmp/scratch/xvfb-run.0B2bEs’ ‘~/tmp/scratch/xvfb-run.1LdJzs’   ‘~/tmp/scratch/xvfb-run.5wH0HO’ ‘~/tmp/scratch/xvfb-run.6kntk5’   ‘~/tmp/scratch/xvfb-run.7I6Mwz’ ‘~/tmp/scratch/xvfb-run.8AUELW’   ‘~/tmp/scratch/xvfb-run.8We0yQ’ ‘~/tmp/scratch/xvfb-run.8kzP7L’   ‘~/tmp/scratch/xvfb-run.9T8DKB’ ‘~/tmp/scratch/xvfb-run.9T9HSD’   ‘~/tmp/scratch/xvfb-run.9cxGKB’ ‘~/tmp/scratch/xvfb-run.9gDRsS’   ‘~/tmp/scratch/xvfb-run.A3OzBb’ ‘~/tmp/scratch/xvfb-run.AfJj0N’   ‘~/tmp/scratch/xvfb-run.BcBmo1’ ‘~/tmp/scratch/xvfb-run.DSV8Er’   ‘~/tmp/scratch/xvfb-run.DkeJ6A’ ‘~/tmp/scratch/xvfb-run.EDTC3U’   ‘~/tmp/scratch/xvfb-run.EVk12Z’ ‘~/tmp/scratch/xvfb-run.GwwtSu’   ‘~/tmp/scratch/xvfb-run.IRhUZb’ ‘~/tmp/scratch/xvfb-run.IlG2DF’   ‘~/tmp/scratch/xvfb-run.JDpqbl’ ‘~/tmp/scratch/xvfb-run.LDey1B’   ‘~/tmp/scratch/xvfb-run.LtIavU’ ‘~/tmp/scratch/xvfb-run.M4V95q’   ‘~/tmp/scratch/xvfb-run.OM4XLp’ ‘~/tmp/scratch/xvfb-run.SEmOXA’   ‘~/tmp/scratch/xvfb-run.SINHRj’ ‘~/tmp/scratch/xvfb-run.SiqiCk’   ‘~/tmp/scratch/xvfb-run.SwDnXZ’ ‘~/tmp/scratch/xvfb-run.Tb1sur’   ‘~/tmp/scratch/xvfb-run.UNYoJg’ ‘~/tmp/scratch/xvfb-run.VVH75F’   ‘~/tmp/scratch/xvfb-run.WMTbnx’ ‘~/tmp/scratch/xvfb-run.XFWgKA’   ‘~/tmp/scratch/xvfb-run.YabVUd’ ‘~/tmp/scratch/xvfb-run.Yc4SBS’   ‘~/tmp/scratch/xvfb-run.YiYLID’ ‘~/tmp/scratch/xvfb-run.dTTf3x’   ‘~/tmp/scratch/xvfb-run.hB3gWZ’ ‘~/tmp/scratch/xvfb-run.jESVog’   ‘~/tmp/scratch/xvfb-run.jhQgFI’ ‘~/tmp/scratch/xvfb-run.lhyFXM’   ‘~/tmp/scratch/xvfb-run.lxo6ch’ ‘~/tmp/scratch/xvfb-run.mvjOEh’   ‘~/tmp/scratch/xvfb-run.nMP6qH’ ‘~/tmp/scratch/xvfb-run.nbxEwu’   ‘~/tmp/scratch/xvfb-run.oNljAo’ ‘~/tmp/scratch/xvfb-run.oVIv8B’   ‘~/tmp/scratch/xvfb-run.onRDw0’ ‘~/tmp/scratch/xvfb-run.qDzjAy’   ‘~/tmp/scratch/xvfb-run.rvfta9’ ‘~/tmp/scratch/xvfb-run.spPtyV’   ‘~/tmp/scratch/xvfb-run.tLXQpR’ ‘~/tmp/scratch/xvfb-run.th48XU’   ‘~/tmp/scratch/xvfb-run.vVDhWR’ ‘~/tmp/scratch/xvfb-run.wLBDh0’   ‘~/tmp/scratch/xvfb-run.x9X3jZ’ ‘~/tmp/scratch/xvfb-run.xiiPML’   ‘~/tmp/scratch/xvfb-run.yqjla6’ ‘~/tmp/scratch/xvfb-run.zHCzki’
• DONE

Status: 1 NOTE