• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:09:16 UTC
• checking for file ‘coxphm/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘coxphm’ version ‘0.2.1’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘coxphm’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [3s/4s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0wD1Z3’ ‘~/tmp/scratch/Rtmp1GLCEb’   ‘~/tmp/scratch/Rtmp1NF8E1’ ‘~/tmp/scratch/Rtmp1ay8H0’   ‘~/tmp/scratch/Rtmp1dUc68’ ‘~/tmp/scratch/Rtmp1t6IsE’   ‘~/tmp/scratch/Rtmp38scJe’ ‘~/tmp/scratch/Rtmp3MFyT5’   ‘~/tmp/scratch/Rtmp3dWJfn’ ‘~/tmp/scratch/Rtmp3hh1V9’   ‘~/tmp/scratch/Rtmp51Uhvg’ ‘~/tmp/scratch/Rtmp569VuQ’   ‘~/tmp/scratch/Rtmp5DPcoo’ ‘~/tmp/scratch/Rtmp5OSCjm’   ‘~/tmp/scratch/Rtmp5Sl82J’ ‘~/tmp/scratch/Rtmp5v91dp’   ‘~/tmp/scratch/Rtmp5zKVjc’ ‘~/tmp/scratch/Rtmp6kiWEt’   ‘~/tmp/scratch/Rtmp6njmfG’ ‘~/tmp/scratch/Rtmp6tw09j’   ‘~/tmp/scratch/Rtmp7oL6Nf’ ‘~/tmp/scratch/Rtmp7pHxjd’   ‘~/tmp/scratch/Rtmp89FjIP’ ‘~/tmp/scratch/Rtmp8DKv1Y’   ‘~/tmp/scratch/Rtmp8uU60J’ ‘~/tmp/scratch/Rtmp99QbPq’   ‘~/tmp/scratch/Rtmp9ujyWs’ ‘~/tmp/scratch/RtmpA1Vl8Z’   ‘~/tmp/scratch/RtmpAOV1oN’ ‘~/tmp/scratch/RtmpAZi1Po’   ‘~/tmp/scratch/RtmpB8CIVQ’ ‘~/tmp/scratch/RtmpB9ARGc’   ‘~/tmp/scratch/RtmpBJv2kn’ ‘~/tmp/scratch/RtmpBL5hZO’   ‘~/tmp/scratch/RtmpBezROH’ ‘~/tmp/scratch/RtmpBpiND1’   ‘~/tmp/scratch/RtmpBuNcSB’ ‘~/tmp/scratch/RtmpBv44qO’   ‘~/tmp/scratch/RtmpBzY8NP’ ‘~/tmp/scratch/RtmpCL0CBt’   ‘~/tmp/scratch/RtmpCsJTkl’ ‘~/tmp/scratch/RtmpD4mZQt’   ‘~/tmp/scratch/RtmpDODXk9’ ‘~/tmp/scratch/RtmpEZYGE7’   ‘~/tmp/scratch/RtmpEsWOcE’ ‘~/tmp/scratch/RtmpFH0i3I’   ‘~/tmp/scratch/RtmpFQcKa6’ ‘~/tmp/scratch/RtmpG0bxPU’   ‘~/tmp/scratch/RtmpGOXBlp’ ‘~/tmp/scratch/RtmpGhqjWf’   ‘~/tmp/scratch/RtmpGrKev1’ ‘~/tmp/scratch/RtmpJ0lTta’   ‘~/tmp/scratch/RtmpJZiTx6’ ‘~/tmp/scratch/RtmpJsTSyb’   ‘~/tmp/scratch/RtmpLDWQCJ’ ‘~/tmp/scratch/RtmpLoesIq’   ‘~/tmp/scratch/RtmpN8scQb’ ‘~/tmp/scratch/RtmpPAaE55’   ‘~/tmp/scratch/RtmpPO1XfS’ ‘~/tmp/scratch/RtmpPyfNSA’   ‘~/tmp/scratch/RtmpQOP3dm’ ‘~/tmp/scratch/RtmpQYM8x3’   ‘~/tmp/scratch/RtmpQxpGSW’ ‘~/tmp/scratch/RtmpRMGPru’   ‘~/tmp/scratch/RtmpRMNkcs’ ‘~/tmp/scratch/RtmpRoodZF’   ‘~/tmp/scratch/RtmpTPtoWU’ ‘~/tmp/scratch/RtmpTQDPam’   ‘~/tmp/scratch/RtmpVfZS8E’ ‘~/tmp/scratch/RtmpXitnIN’   ‘~/tmp/scratch/RtmpXtJVUB’ ‘~/tmp/scratch/RtmpYSkQky’   ‘~/tmp/scratch/RtmpYhwlan’ ‘~/tmp/scratch/RtmpZSxOLG’   ‘~/tmp/scratch/RtmpZWmv0v’ ‘~/tmp/scratch/RtmpZeqfuA’   ‘~/tmp/scratch/RtmpaLCexS’ ‘~/tmp/scratch/RtmpaRwKFs’   ‘~/tmp/scratch/RtmpaTn0sQ’ ‘~/tmp/scratch/RtmpalnXZQ’   ‘~/tmp/scratch/RtmpazrAWz’ ‘~/tmp/scratch/RtmpbHY5Js’   ‘~/tmp/scratch/RtmpbWFSsQ’ ‘~/tmp/scratch/RtmpcON3eP’   ‘~/tmp/scratch/Rtmpe67yNV’ ‘~/tmp/scratch/RtmpeFshw4’   ‘~/tmp/scratch/RtmpfQlogt’ ‘~/tmp/scratch/RtmpfeQ0tH’   ‘~/tmp/scratch/Rtmpfx2ZzP’ ‘~/tmp/scratch/Rtmpg8Nhxa’   ‘~/tmp/scratch/Rtmpg93WsF’ ‘~/tmp/scratch/RtmpgIeYbM’   ‘~/tmp/scratch/RtmpgsDSUn’ ‘~/tmp/scratch/RtmphhSRCB’   ‘~/tmp/scratch/RtmpimprAQ’ ‘~/tmp/scratch/RtmpiwIvZZ’   ‘~/tmp/scratch/RtmpjDbGoC’ ‘~/tmp/scratch/RtmpjFNsmp’   ‘~/tmp/scratch/RtmpjyXKEU’ ‘~/tmp/scratch/RtmpkD3xRP’   ‘~/tmp/scratch/RtmpkJqns6’ ‘~/tmp/scratch/RtmpkS1XKz’   ‘~/tmp/scratch/RtmpkW8yWw’ ‘~/tmp/scratch/RtmplFwiIb’   ‘~/tmp/scratch/RtmpmRdITS’ ‘~/tmp/scratch/Rtmpou6TC2’   ‘~/tmp/scratch/RtmppCVRNB’ ‘~/tmp/scratch/Rtmppbxbi0’   ‘~/tmp/scratch/RtmppgXPTr’ ‘~/tmp/scratch/Rtmpq5SFSm’   ‘~/tmp/scratch/RtmpqMd5zK’ ‘~/tmp/scratch/Rtmpr0XRPU’   ‘~/tmp/scratch/Rtmps1Rql5’ ‘~/tmp/scratch/RtmpsD7Jcj’   ‘~/tmp/scratch/Rtmpu1oR18’ ‘~/tmp/scratch/RtmpuFWV2J’   ‘~/tmp/scratch/RtmpvBwGmx’ ‘~/tmp/scratch/RtmpvqxSuy’   ‘~/tmp/scratch/RtmpvvlyMr’ ‘~/tmp/scratch/Rtmpw3cIow’   ‘~/tmp/scratch/Rtmpw7rVck’ ‘~/tmp/scratch/RtmpwvdBmm’   ‘~/tmp/scratch/Rtmpx12VYA’ ‘~/tmp/scratch/RtmpxRSzhn’   ‘~/tmp/scratch/RtmpxfeKP4’ ‘~/tmp/scratch/Rtmpxsou8G’   ‘~/tmp/scratch/RtmpyDQ212’ ‘~/tmp/scratch/RtmpyrRY4X’   ‘~/tmp/scratch/Rtmpyw3AgK’ ‘~/tmp/scratch/RtmpzGmynH’   ‘~/tmp/scratch/RtmpzRoo8J’ ‘~/tmp/scratch/RtmpzbXh4B’   ‘~/tmp/scratch/RtmpzhAcwa’ ‘~/tmp/scratch/xvfb-run.03PHts’   ‘~/tmp/scratch/xvfb-run.0ESBz7’ ‘~/tmp/scratch/xvfb-run.0Y6qv3’   ‘~/tmp/scratch/xvfb-run.0ypmfO’ ‘~/tmp/scratch/xvfb-run.0zg0tn’   ‘~/tmp/scratch/xvfb-run.1Tpjiu’ ‘~/tmp/scratch/xvfb-run.2m9sSj’   ‘~/tmp/scratch/xvfb-run.4RkFCv’ ‘~/tmp/scratch/xvfb-run.6a1mpb’   ‘~/tmp/scratch/xvfb-run.85m0AS’ ‘~/tmp/scratch/xvfb-run.8xUFa0’   ‘~/tmp/scratch/xvfb-run.Aq6iBH’ ‘~/tmp/scratch/xvfb-run.BYE6nT’   ‘~/tmp/scratch/xvfb-run.Crc8JA’ ‘~/tmp/scratch/xvfb-run.F4zHsc’   ‘~/tmp/scratch/xvfb-run.JRI2EI’ ‘~/tmp/scratch/xvfb-run.Jjccyj’   ‘~/tmp/scratch/xvfb-run.KMAwTu’ ‘~/tmp/scratch/xvfb-run.RxSoRs’   ‘~/tmp/scratch/xvfb-run.SsJEoZ’ ‘~/tmp/scratch/xvfb-run.UN2K3r’   ‘~/tmp/scratch/xvfb-run.Vfg9fi’ ‘~/tmp/scratch/xvfb-run.WoqXIX’   ‘~/tmp/scratch/xvfb-run.XIGJAr’ ‘~/tmp/scratch/xvfb-run.Zvnm2a’   ‘~/tmp/scratch/xvfb-run.bLlHIr’ ‘~/tmp/scratch/xvfb-run.bnLfXE’   ‘~/tmp/scratch/xvfb-run.cJ0Fht’ ‘~/tmp/scratch/xvfb-run.cX676l’   ‘~/tmp/scratch/xvfb-run.dbvKUG’ ‘~/tmp/scratch/xvfb-run.eMd3qm’   ‘~/tmp/scratch/xvfb-run.fm4Ene’ ‘~/tmp/scratch/xvfb-run.kVW8Ai’   ‘~/tmp/scratch/xvfb-run.ksH9ei’ ‘~/tmp/scratch/xvfb-run.mmNuYX’   ‘~/tmp/scratch/xvfb-run.moqQ71’ ‘~/tmp/scratch/xvfb-run.oOFlpg’   ‘~/tmp/scratch/xvfb-run.pMKHvH’ ‘~/tmp/scratch/xvfb-run.q1yvz2’   ‘~/tmp/scratch/xvfb-run.qPXt1M’ ‘~/tmp/scratch/xvfb-run.t3Ol6f’   ‘~/tmp/scratch/xvfb-run.tBORf3’ ‘~/tmp/scratch/xvfb-run.tjrHLl’   ‘~/tmp/scratch/xvfb-run.u4qEDe’ ‘~/tmp/scratch/xvfb-run.uuCFhe’   ‘~/tmp/scratch/xvfb-run.wkOiN8’ ‘~/tmp/scratch/xvfb-run.wzmWto’   ‘~/tmp/scratch/xvfb-run.xkcV0R’ ‘~/tmp/scratch/xvfb-run.zg1FG7’
• DONE

Status: 1 NOTE