• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:08:06 UTC
• checking for file ‘cosimmr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘cosimmr’ version ‘1.0.12’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cosimmr’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/17s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [79s/87s] OK   Running ‘testthat.R’ [79s/86s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [102s/134s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0FM1Mv’ ‘~/tmp/scratch/Rtmp0Fktz9’   ‘~/tmp/scratch/Rtmp0OXre5’ ‘~/tmp/scratch/Rtmp0q1dyW’   ‘~/tmp/scratch/Rtmp1NhNLr’ ‘~/tmp/scratch/Rtmp1j9LLf’   ‘~/tmp/scratch/Rtmp1lY2rW’ ‘~/tmp/scratch/Rtmp2xRP2C’   ‘~/tmp/scratch/Rtmp3YkIBU’ ‘~/tmp/scratch/Rtmp3iZY1i’   ‘~/tmp/scratch/Rtmp4DDA9q’ ‘~/tmp/scratch/Rtmp4XM8sq’   ‘~/tmp/scratch/Rtmp4jEPTN’ ‘~/tmp/scratch/Rtmp55qPXP’   ‘~/tmp/scratch/Rtmp5IZZh0’ ‘~/tmp/scratch/Rtmp5M23Lq’   ‘~/tmp/scratch/Rtmp5VA2DR’ ‘~/tmp/scratch/Rtmp5akGrd’   ‘~/tmp/scratch/Rtmp63B3ID’ ‘~/tmp/scratch/Rtmp6I68uc’   ‘~/tmp/scratch/Rtmp6Xz2O8’ ‘~/tmp/scratch/Rtmp6bNGMl’   ‘~/tmp/scratch/Rtmp6c4nwR’ ‘~/tmp/scratch/Rtmp6njmfG’   ‘~/tmp/scratch/Rtmp6oHfek’ ‘~/tmp/scratch/Rtmp85vufw’   ‘~/tmp/scratch/Rtmp8BUX8u’ ‘~/tmp/scratch/Rtmp8LFDiE’   ‘~/tmp/scratch/Rtmp8nVZRB’ ‘~/tmp/scratch/Rtmp9IHLmX’   ‘~/tmp/scratch/Rtmp9jkT2w’ ‘~/tmp/scratch/RtmpAD5drh’   ‘~/tmp/scratch/RtmpAIG0gt’ ‘~/tmp/scratch/RtmpAOV1oN’   ‘~/tmp/scratch/RtmpAf8jTd’ ‘~/tmp/scratch/RtmpB9ARGc’   ‘~/tmp/scratch/RtmpBRyZmz’ ‘~/tmp/scratch/RtmpBmZGze’   ‘~/tmp/scratch/RtmpBycROq’ ‘~/tmp/scratch/RtmpDNBS4x’   ‘~/tmp/scratch/RtmpEJZU7b’ ‘~/tmp/scratch/RtmpEdMNR9’   ‘~/tmp/scratch/RtmpFGgWyc’ ‘~/tmp/scratch/RtmpGMIE6y’   ‘~/tmp/scratch/RtmpGQXA1M’ ‘~/tmp/scratch/RtmpGSjP5o’   ‘~/tmp/scratch/RtmpGnDfjC’ ‘~/tmp/scratch/RtmpH1ygxI’   ‘~/tmp/scratch/RtmpHSOucM’ ‘~/tmp/scratch/RtmpHWCdfC’   ‘~/tmp/scratch/RtmpHWJMj8’ ‘~/tmp/scratch/RtmpHoNpnV’   ‘~/tmp/scratch/RtmpHthbFH’ ‘~/tmp/scratch/RtmpJlZLYB’   ‘~/tmp/scratch/RtmpJsTP9p’ ‘~/tmp/scratch/RtmpJsTSyb’   ‘~/tmp/scratch/RtmpL6G3Qy’ ‘~/tmp/scratch/RtmpLD1INy’   ‘~/tmp/scratch/RtmpLM2zTo’ ‘~/tmp/scratch/RtmpLaWO18’   ‘~/tmp/scratch/RtmpLm9GPs’ ‘~/tmp/scratch/RtmpLmn6c6’   ‘~/tmp/scratch/RtmpLy51Wf’ ‘~/tmp/scratch/RtmpMEh5am’   ‘~/tmp/scratch/RtmpMTwf8A’ ‘~/tmp/scratch/RtmpMWvRUU’   ‘~/tmp/scratch/RtmpNX9ESH’ ‘~/tmp/scratch/RtmpOHFoVQ’   ‘~/tmp/scratch/RtmpOHFrNo’ ‘~/tmp/scratch/RtmpP7DqgH’   ‘~/tmp/scratch/RtmpPNzf4p’ ‘~/tmp/scratch/RtmpPVtJxr’   ‘~/tmp/scratch/RtmpPnPh7a’ ‘~/tmp/scratch/RtmpQMwSvd’   ‘~/tmp/scratch/RtmpRGRuAC’ ‘~/tmp/scratch/RtmpRYqRBa’   ‘~/tmp/scratch/RtmpSDFch3’ ‘~/tmp/scratch/RtmpSDHXQJ’   ‘~/tmp/scratch/RtmpScaOSb’ ‘~/tmp/scratch/RtmpSqwFcB’   ‘~/tmp/scratch/RtmpSzE37E’ ‘~/tmp/scratch/RtmpTLrzkg’   ‘~/tmp/scratch/RtmpTglsxX’ ‘~/tmp/scratch/RtmpTuYtdD’   ‘~/tmp/scratch/RtmpUI0jFj’ ‘~/tmp/scratch/RtmpVCsAGS’   ‘~/tmp/scratch/RtmpXUjAWj’ ‘~/tmp/scratch/RtmpXWdTmd’   ‘~/tmp/scratch/RtmpXitnIN’ ‘~/tmp/scratch/RtmpYtOHUM’   ‘~/tmp/scratch/RtmpZ97UxF’ ‘~/tmp/scratch/RtmpZEX4zG’   ‘~/tmp/scratch/RtmpZLW0C5’ ‘~/tmp/scratch/Rtmpa1gpVb’   ‘~/tmp/scratch/Rtmpa2N2QY’ ‘~/tmp/scratch/RtmpaJUQxD’   ‘~/tmp/scratch/RtmpaQOBYI’ ‘~/tmp/scratch/RtmpamJvih’   ‘~/tmp/scratch/RtmpbHY5Js’ ‘~/tmp/scratch/RtmpbxnEAu’   ‘~/tmp/scratch/RtmpcUqy8C’ ‘~/tmp/scratch/RtmpcbTeph’   ‘~/tmp/scratch/RtmpdGsb4A’ ‘~/tmp/scratch/RtmpdIWU2c’   ‘~/tmp/scratch/RtmpdUpQJ3’ ‘~/tmp/scratch/RtmpdVuMCE’   ‘~/tmp/scratch/RtmpdhRxV7’ ‘~/tmp/scratch/RtmpdhsUhl’   ‘~/tmp/scratch/RtmpdisQRD’ ‘~/tmp/scratch/Rtmpe5McDq’   ‘~/tmp/scratch/RtmpeYx9NK’ ‘~/tmp/scratch/Rtmpeir5Dz’   ‘~/tmp/scratch/RtmpejLnBR’ ‘~/tmp/scratch/Rtmpeoyzf0’   ‘~/tmp/scratch/Rtmpf4xf7x’ ‘~/tmp/scratch/RtmpfTiW2L’   ‘~/tmp/scratch/RtmpfbklTk’ ‘~/tmp/scratch/RtmpfnwGZF’   ‘~/tmp/scratch/RtmpgbWlkX’ ‘~/tmp/scratch/RtmpgzyXgu’   ‘~/tmp/scratch/Rtmpha5qdt’ ‘~/tmp/scratch/RtmphpwUI5’   ‘~/tmp/scratch/Rtmphz7fjj’ ‘~/tmp/scratch/Rtmpi4k1bB’   ‘~/tmp/scratch/RtmpisOeeQ’ ‘~/tmp/scratch/RtmpjGtzpb’   ‘~/tmp/scratch/RtmpjWSWxd’ ‘~/tmp/scratch/RtmpkltVSu’   ‘~/tmp/scratch/RtmplAbkOD’ ‘~/tmp/scratch/RtmplM7BS0’   ‘~/tmp/scratch/RtmplU65wt’ ‘~/tmp/scratch/Rtmpm9c9kx’   ‘~/tmp/scratch/RtmpmGhdax’ ‘~/tmp/scratch/RtmpmqM1Na’   ‘~/tmp/scratch/RtmpnKAsAL’ ‘~/tmp/scratch/RtmpnjNhuT’   ‘~/tmp/scratch/RtmpnuDYYV’ ‘~/tmp/scratch/RtmpoH6vQU’   ‘~/tmp/scratch/Rtmpog2cVX’ ‘~/tmp/scratch/RtmppRoGZ1’   ‘~/tmp/scratch/RtmppgXPTr’ ‘~/tmp/scratch/RtmpplQ4GH’   ‘~/tmp/scratch/Rtmppn8BS2’ ‘~/tmp/scratch/RtmppqVYPN’   ‘~/tmp/scratch/RtmppwO59M’ ‘~/tmp/scratch/Rtmpq6zq4p’   ‘~/tmp/scratch/Rtmpq70L6J’ ‘~/tmp/scratch/RtmprtCbSD’   ‘~/tmp/scratch/RtmpsCj4JL’ ‘~/tmp/scratch/RtmpsD7Jcj’   ‘~/tmp/scratch/Rtmpt4B5p2’ ‘~/tmp/scratch/RtmptBiiOL’   ‘~/tmp/scratch/RtmptYmU6a’ ‘~/tmp/scratch/RtmpuRKImv’   ‘~/tmp/scratch/Rtmpvl2CZH’ ‘~/tmp/scratch/Rtmpw5U2KJ’   ‘~/tmp/scratch/RtmpwI1LZ9’ ‘~/tmp/scratch/RtmpwlGVYe’   ‘~/tmp/scratch/RtmpwrK0DD’ ‘~/tmp/scratch/RtmpwyJpjh’   ‘~/tmp/scratch/RtmpxCTxRt’ ‘~/tmp/scratch/RtmpxCYzeh’   ‘~/tmp/scratch/RtmpyaK2mY’ ‘~/tmp/scratch/RtmpywADzz’   ‘~/tmp/scratch/RtmpzRL06a’ ‘~/tmp/scratch/RtmpzVp43H’   ‘~/tmp/scratch/xvfb-run.0YKJTg’ ‘~/tmp/scratch/xvfb-run.0eJNrX’   ‘~/tmp/scratch/xvfb-run.0hka87’ ‘~/tmp/scratch/xvfb-run.0wQQqf’   ‘~/tmp/scratch/xvfb-run.0ynKRw’ ‘~/tmp/scratch/xvfb-run.1o9v23’   ‘~/tmp/scratch/xvfb-run.4OjqJl’ ‘~/tmp/scratch/xvfb-run.4h6N0w’   ‘~/tmp/scratch/xvfb-run.5I7Pxl’ ‘~/tmp/scratch/xvfb-run.5cP8Z9’   ‘~/tmp/scratch/xvfb-run.6CPgHC’ ‘~/tmp/scratch/xvfb-run.6iPkFm’   ‘~/tmp/scratch/xvfb-run.8xUFa0’ ‘~/tmp/scratch/xvfb-run.9XeXY6’   ‘~/tmp/scratch/xvfb-run.ArQMRq’ ‘~/tmp/scratch/xvfb-run.AtSuCV’   ‘~/tmp/scratch/xvfb-run.B2YUly’ ‘~/tmp/scratch/xvfb-run.BJYfe9’   ‘~/tmp/scratch/xvfb-run.BcdB1i’ ‘~/tmp/scratch/xvfb-run.CDh88R’   ‘~/tmp/scratch/xvfb-run.DqRVcw’ ‘~/tmp/scratch/xvfb-run.FfDg4K’   ‘~/tmp/scratch/xvfb-run.HWwRtJ’ ‘~/tmp/scratch/xvfb-run.HaqQxA’   ‘~/tmp/scratch/xvfb-run.J4a0rm’ ‘~/tmp/scratch/xvfb-run.JZzA1k’   ‘~/tmp/scratch/xvfb-run.K3etYZ’ ‘~/tmp/scratch/xvfb-run.MgqJAz’   ‘~/tmp/scratch/xvfb-run.Ncs8I3’ ‘~/tmp/scratch/xvfb-run.Oq1EM8’   ‘~/tmp/scratch/xvfb-run.OsdP2U’ ‘~/tmp/scratch/xvfb-run.P9u5I1’   ‘~/tmp/scratch/xvfb-run.PrCcfQ’ ‘~/tmp/scratch/xvfb-run.Rkenu8’   ‘~/tmp/scratch/xvfb-run.RxSoRs’ ‘~/tmp/scratch/xvfb-run.TaoSJE’   ‘~/tmp/scratch/xvfb-run.Tb0vG6’ ‘~/tmp/scratch/xvfb-run.TtfG7v’   ‘~/tmp/scratch/xvfb-run.U6LvnZ’ ‘~/tmp/scratch/xvfb-run.VNHOQV’   ‘~/tmp/scratch/xvfb-run.VODPVR’ ‘~/tmp/scratch/xvfb-run.Vi2FqT’   ‘~/tmp/scratch/xvfb-run.VzMCvO’ ‘~/tmp/scratch/xvfb-run.WlUdxF’   ‘~/tmp/scratch/xvfb-run.XIGJAr’ ‘~/tmp/scratch/xvfb-run.ZII8FR’   ‘~/tmp/scratch/xvfb-run.Zvnm2a’ ‘~/tmp/scratch/xvfb-run.aLkmk9’   ‘~/tmp/scratch/xvfb-run.bQvH6e’ ‘~/tmp/scratch/xvfb-run.dEgM9K’   ‘~/tmp/scratch/xvfb-run.domVi6’ ‘~/tmp/scratch/xvfb-run.eMd3qm’   ‘~/tmp/scratch/xvfb-run.gmVKE6’ ‘~/tmp/scratch/xvfb-run.kKy6Ur’   ‘~/tmp/scratch/xvfb-run.kNOkiv’ ‘~/tmp/scratch/xvfb-run.kXUz1V’   ‘~/tmp/scratch/xvfb-run.mvfw4w’ ‘~/tmp/scratch/xvfb-run.nON1wp’   ‘~/tmp/scratch/xvfb-run.oJKdLy’ ‘~/tmp/scratch/xvfb-run.qPXt1M’   ‘~/tmp/scratch/xvfb-run.rTTTCX’ ‘~/tmp/scratch/xvfb-run.s1EAO1’   ‘~/tmp/scratch/xvfb-run.sUhdae’ ‘~/tmp/scratch/xvfb-run.sgod9h’   ‘~/tmp/scratch/xvfb-run.snRea9’ ‘~/tmp/scratch/xvfb-run.soY1Un’   ‘~/tmp/scratch/xvfb-run.tN6RTG’ ‘~/tmp/scratch/xvfb-run.u4qEDe’   ‘~/tmp/scratch/xvfb-run.uv1tfp’ ‘~/tmp/scratch/xvfb-run.vLgUrK’   ‘~/tmp/scratch/xvfb-run.vdh7C1’ ‘~/tmp/scratch/xvfb-run.vrbxUs’   ‘~/tmp/scratch/xvfb-run.vyzIR1’ ‘~/tmp/scratch/xvfb-run.w6qDXX’   ‘~/tmp/scratch/xvfb-run.xKh5OJ’ ‘~/tmp/scratch/xvfb-run.y6qpuE’   ‘~/tmp/scratch/xvfb-run.zmNPP4’ ‘~/tmp/scratch/xvfb-run.zyu0ls’   ‘/dev/shm/sm_segment.gimli1.1001.ad7b0000.0’   ‘~/.cache/pocl/uncached/tempfile_qLviC0’
• DONE

Status: 1 NOTE