• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 14:18:31 UTC
• checking for file ‘copCAR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘copCAR’ version ‘2.0-4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Emily",                       family = "Goren",                       role = "aut",                       email = "emily.goren@gmail.com"),                person(given = "John",                       family = "Hughes",                       role = c("aut", "cre"),                       email = "drjphughesjr@gmail.com")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘copCAR’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• used Fortran compiler: ‘GNU Fortran (Debian 16.1.0-3) 16.1.0’
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) copCAR.Rd:40: Lost braces     40 | item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}        | ^ checkRd: (-1) copCAR.Rd:40: Lost braces     40 | item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking examples ... [1s/1s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp06MzHk’ ‘~/tmp/scratch/Rtmp0MEFeo’   ‘~/tmp/scratch/Rtmp0ycfwK’ ‘~/tmp/scratch/Rtmp1140qA’   ‘~/tmp/scratch/Rtmp19elh7’ ‘~/tmp/scratch/Rtmp1CP1m4’   ‘~/tmp/scratch/Rtmp1bFwn9’ ‘~/tmp/scratch/Rtmp1qu2jr’   ‘~/tmp/scratch/Rtmp1sdWo1’ ‘~/tmp/scratch/Rtmp2HICH8’   ‘~/tmp/scratch/Rtmp2Melsv’ ‘~/tmp/scratch/Rtmp53IdQK’   ‘~/tmp/scratch/Rtmp59uUBC’ ‘~/tmp/scratch/Rtmp5e7Dol’   ‘~/tmp/scratch/Rtmp6DJEOH’ ‘~/tmp/scratch/Rtmp7TwDR4’   ‘~/tmp/scratch/Rtmp7ZeRWb’ ‘~/tmp/scratch/Rtmp8ihALi’   ‘~/tmp/scratch/Rtmp8qBkNX’ ‘~/tmp/scratch/Rtmp9ZWsYp’   ‘~/tmp/scratch/RtmpAYpP6e’ ‘~/tmp/scratch/RtmpBLMSH6’   ‘~/tmp/scratch/RtmpBwcwwP’ ‘~/tmp/scratch/RtmpCsMWTI’   ‘~/tmp/scratch/RtmpCzU2Xt’ ‘~/tmp/scratch/RtmpE7ntzK’   ‘~/tmp/scratch/RtmpEnIxf8’ ‘~/tmp/scratch/RtmpGCX0Wz’   ‘~/tmp/scratch/RtmpGiQJCf’ ‘~/tmp/scratch/RtmpGxZimN’   ‘~/tmp/scratch/RtmpHzSsC1’ ‘~/tmp/scratch/RtmpKxhFl5’   ‘~/tmp/scratch/RtmpLNKfTX’ ‘~/tmp/scratch/RtmpLeqzMg’   ‘~/tmp/scratch/RtmpLklEX5’ ‘~/tmp/scratch/RtmpM779xN’   ‘~/tmp/scratch/RtmpMllUy7’ ‘~/tmp/scratch/RtmpOTRLNb’   ‘~/tmp/scratch/RtmpOggLxm’ ‘~/tmp/scratch/RtmpOhIVNQ’   ‘~/tmp/scratch/RtmpOwMdlC’ ‘~/tmp/scratch/RtmpQVTC1c’   ‘~/tmp/scratch/RtmpR6VQ1v’ ‘~/tmp/scratch/RtmpRBvf5q’   ‘~/tmp/scratch/RtmpRKFpTa’ ‘~/tmp/scratch/RtmpS9sqek’   ‘~/tmp/scratch/RtmpSAB4hy’ ‘~/tmp/scratch/RtmpSDK7qn’   ‘~/tmp/scratch/RtmpT2bCH3’ ‘~/tmp/scratch/RtmpTem3V8’   ‘~/tmp/scratch/RtmpTmNGRF’ ‘~/tmp/scratch/RtmpV8DisQ’   ‘~/tmp/scratch/RtmpVP9Mfh’ ‘~/tmp/scratch/RtmpVfHAgu’   ‘~/tmp/scratch/RtmpWCjGVP’ ‘~/tmp/scratch/RtmpWVQzaO’   ‘~/tmp/scratch/RtmpWesu8z’ ‘~/tmp/scratch/RtmpWhYpUD’   ‘~/tmp/scratch/RtmpWmMQyR’ ‘~/tmp/scratch/RtmpWpKfZK’   ‘~/tmp/scratch/RtmpX9TLft’ ‘~/tmp/scratch/RtmpXqzjM8’   ‘~/tmp/scratch/RtmpYA9oYm’ ‘~/tmp/scratch/RtmpYIRrBb’   ‘~/tmp/scratch/RtmpYbsHP5’ ‘~/tmp/scratch/RtmpYjhsBC’   ‘~/tmp/scratch/RtmpZR1plX’ ‘~/tmp/scratch/RtmpZZF1nI’   ‘~/tmp/scratch/Rtmpa5bBGB’ ‘~/tmp/scratch/RtmpaWVCF1’   ‘~/tmp/scratch/RtmpbIG4D8’ ‘~/tmp/scratch/RtmpbnutJY’   ‘~/tmp/scratch/Rtmpbx4qf9’ ‘~/tmp/scratch/RtmpcZY8ag’   ‘~/tmp/scratch/Rtmpch31tY’ ‘~/tmp/scratch/RtmpdRiahd’   ‘~/tmp/scratch/RtmpeEBn0k’ ‘~/tmp/scratch/RtmpeH16B4’   ‘~/tmp/scratch/Rtmpey3HAP’ ‘~/tmp/scratch/Rtmpf5Zd2h’   ‘~/tmp/scratch/Rtmpfzz1sR’ ‘~/tmp/scratch/RtmpgMH4mI’   ‘~/tmp/scratch/RtmpgajW46’ ‘~/tmp/scratch/RtmphzjW1q’   ‘~/tmp/scratch/RtmpiBtVZC’ ‘~/tmp/scratch/RtmpicncnN’   ‘~/tmp/scratch/RtmpicxN7g’ ‘~/tmp/scratch/RtmpjMLGau’   ‘~/tmp/scratch/RtmpkPQBVa’ ‘~/tmp/scratch/RtmpkdayXl’   ‘~/tmp/scratch/RtmpmWU0lG’ ‘~/tmp/scratch/RtmpmiB9Av’   ‘~/tmp/scratch/RtmpmmMl7E’ ‘~/tmp/scratch/RtmpnC2hc6’   ‘~/tmp/scratch/RtmpnLr247’ ‘~/tmp/scratch/RtmpoH313r’   ‘~/tmp/scratch/Rtmpp7Ltgf’ ‘~/tmp/scratch/RtmppNiqaJ’   ‘~/tmp/scratch/RtmppaMPrm’ ‘~/tmp/scratch/RtmppfcRgk’   ‘~/tmp/scratch/Rtmppp51Qb’ ‘~/tmp/scratch/RtmppqLYjW’   ‘~/tmp/scratch/RtmpptqNKm’ ‘~/tmp/scratch/RtmpqEMo0I’   ‘~/tmp/scratch/RtmpqnWyez’ ‘~/tmp/scratch/RtmprexmV3’   ‘~/tmp/scratch/RtmpsGh18e’ ‘~/tmp/scratch/RtmptN0MMV’   ‘~/tmp/scratch/RtmpuP8gT2’ ‘~/tmp/scratch/RtmpuSuwSG’   ‘~/tmp/scratch/RtmpucI59g’ ‘~/tmp/scratch/RtmpvXBOds’   ‘~/tmp/scratch/RtmpxGd6xq’ ‘~/tmp/scratch/RtmpyCVfdg’   ‘~/tmp/scratch/RtmpykfOYf’ ‘~/tmp/scratch/RtmpysEMlL’   ‘~/tmp/scratch/Rtmpywq2WD’ ‘~/tmp/scratch/RtmpzUZHHA’   ‘~/tmp/scratch/RtmpzhE45N’ ‘~/tmp/scratch/RtmpzlCPJo’   ‘~/tmp/scratch/xvfb-run.1Wwd4m’ ‘~/tmp/scratch/xvfb-run.3WC6Dt’   ‘~/tmp/scratch/xvfb-run.3kyIaQ’ ‘~/tmp/scratch/xvfb-run.3zGYRV’   ‘~/tmp/scratch/xvfb-run.65I3rD’ ‘~/tmp/scratch/xvfb-run.6TGQt5’   ‘~/tmp/scratch/xvfb-run.6g8mV0’ ‘~/tmp/scratch/xvfb-run.6lWzlu’   ‘~/tmp/scratch/xvfb-run.74kcrW’ ‘~/tmp/scratch/xvfb-run.7s3uIi’   ‘~/tmp/scratch/xvfb-run.ApVObM’ ‘~/tmp/scratch/xvfb-run.B4GO8L’   ‘~/tmp/scratch/xvfb-run.ByCCrd’ ‘~/tmp/scratch/xvfb-run.CvzLtH’   ‘~/tmp/scratch/xvfb-run.DbdiIG’ ‘~/tmp/scratch/xvfb-run.FhTlXE’   ‘~/tmp/scratch/xvfb-run.JhirXe’ ‘~/tmp/scratch/xvfb-run.M7v5PF’   ‘~/tmp/scratch/xvfb-run.MDtZDQ’ ‘~/tmp/scratch/xvfb-run.MGWb6P’   ‘~/tmp/scratch/xvfb-run.OcPQh0’ ‘~/tmp/scratch/xvfb-run.P3SiOt’   ‘~/tmp/scratch/xvfb-run.PDC2xa’ ‘~/tmp/scratch/xvfb-run.RaEePs’   ‘~/tmp/scratch/xvfb-run.RaumoR’ ‘~/tmp/scratch/xvfb-run.RxcOLx’   ‘~/tmp/scratch/xvfb-run.T317GN’ ‘~/tmp/scratch/xvfb-run.XRf2HA’   ‘~/tmp/scratch/xvfb-run.Xrkw1P’ ‘~/tmp/scratch/xvfb-run.YZpjlq’   ‘~/tmp/scratch/xvfb-run.aaAjNE’ ‘~/tmp/scratch/xvfb-run.bgpBU3’   ‘~/tmp/scratch/xvfb-run.cPReGQ’ ‘~/tmp/scratch/xvfb-run.gfNBau’   ‘~/tmp/scratch/xvfb-run.jC5wkb’ ‘~/tmp/scratch/xvfb-run.jxdRMx’   ‘~/tmp/scratch/xvfb-run.k3D5VP’ ‘~/tmp/scratch/xvfb-run.kWoc8q’   ‘~/tmp/scratch/xvfb-run.lPoZZB’ ‘~/tmp/scratch/xvfb-run.ntQ57t’   ‘~/tmp/scratch/xvfb-run.oGKP2k’ ‘~/tmp/scratch/xvfb-run.pIPZkO’   ‘~/tmp/scratch/xvfb-run.rzQeCk’ ‘~/tmp/scratch/xvfb-run.tzcGMk’   ‘~/tmp/scratch/xvfb-run.xhvaFX’
• DONE

Status: 3 NOTEs