• using R Under development (unstable) (2026-06-06 r90114)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-1) 16.1.0     GNU Fortran (Debian 16.1.0-1) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-06-07 12:20:29 UTC
• checking for file ‘contingencytables/DESCRIPTION’ ... OK
• this is package ‘contingencytables’ version ‘3.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘contingencytables’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/28s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [19s/23s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [14s/17s] ERROR   Running ‘testthat.R’ [14s/17s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > testthat::test_check("contingencytables")   Loading required package: contingencytables   Welcome to contingencytables 3.1.0.   Please run ?chapX or list_functions(x) to see the functions related to chapter X.   Saving _problems/test-biggerstaff-25.R   Saving _problems/test-ch2-18.R   Saving _problems/test-ch3-18.R   Saving _problems/test-ch4-7.R   Saving _problems/test-ch5-8.R   Saving _problems/test-ch6-12.R   Saving _problems/test-ch7-121.R   [ FAIL 7 | WARN 9 | SKIP 0 | PASS 724 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-biggerstaff.R:22:3'): Brad's version of multiple_hypergeometric_pdf() solves NA issues ──   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-biggerstaff.R:22:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")   ── Error ('test-ch2.R:15:3'): Chapter 2 functions basically work ───────────────   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-ch2.R:15:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")   ── Error ('test-ch3.R:15:3'): Chapter 3 functions basically work ───────────────   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-ch3.R:15:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")   ── Error ('test-ch4.R:4:3'): Chapter 4 functions basically work ────────────────   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-ch4.R:4:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")   ── Error ('test-ch5.R:5:3'): Chapter 5 functions basically work ────────────────   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-ch5.R:5:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")   ── Error ('test-ch6.R:9:3'): Chapter 6 functions basically work ────────────────   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-ch6.R:9:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")   ── Error ('test-ch7.R:115:3'): Chapter 7 functions basically work ──────────────   Error in `file(file, if (append) "a" else "w")`: cannot open the connection   Backtrace:        ▆     1. └─testthat::expect_output(...) at test-ch7.R:115:3     2. └─testthat:::quasi_capture(...)     3. └─testthat (local) .capture(...)     4. └─testthat::capture_output_lines(code, print, width = width)     5. └─testthat:::eval_with_output(code, print = print, width = width)     6. └─withr::with_output_sink(path, withVisible(code))     7. └─withr:::set_output_sink(file = new, append = append, split = split)     8. └─withr:::output_sink(file = file, append = append, split = split)     9. └─base::sink(file = file, append = append, type = "output", split = split)    10. └─base::file(file, if (append) "a" else "w")      [ FAIL 7 | WARN 9 | SKIP 0 | PASS 724 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [8s/9s] OK
• checking HTML version of manual ... [6s/10s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR