Install log for 'conleyreg'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘conleyreg’ ...
** this is package ‘conleyreg’ version ‘0.1.9’
** package ‘conleyreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAuASl2/R.INSTALL2e1f13720404d/conleyreg/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c XeeXhC.cpp -o XeeXhC.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c XeeXhC_R.cpp -o XeeXhC_R.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dist_mat.cpp -o dist_mat.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distance_functions.cpp -o distance_functions.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distance_matrices.cpp -o distance_matrices.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c isbalanced.cpp -o isbalanced.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lp.cpp -o lp.o
In file included from /usr/include/x86_64-linux-gnu/c++/16/bits/c++allocator.h:33,
                 from /usr/include/c++/16/bits/allocator.h:46,
                 from /usr/include/c++/16/bits/alloc_traits.h:39,
                 from /usr/include/c++/16/ext/alloc_traits.h:36,
                 from /usr/include/c++/16/bits/hashtable_policy.h:40,
                 from /usr/include/c++/16/bits/hashtable.h:37,
                 from /usr/include/c++/16/bits/unordered_map.h:33,
                 from /usr/include/c++/16/unordered_map:43,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/platform/compiler.h:39,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:67,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from lp.cpp:1:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = short int]’,
    inlined from ‘static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = short int]’ at /usr/include/c++/16/bits/alloc_traits.h:689:23,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:398:19,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:394:7,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:378:15,
    inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:795:7,
    inlined from ‘arma::mat lp_s_b(arma::mat&, arma::mat&, arma::vec&, unsigned int, unsigned int, double, bool, short unsigned int)’ at lp.cpp:497:10:
/usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘void operator delete(void*, std::size_t)’ called on unallocated object ‘values_vec’ [-Wfree-nonheap-object]
  183 |         _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
      |                                                                  ^
lp.cpp: In function ‘arma::mat lp_s_b(arma::mat&, arma::mat&, arma::vec&, unsigned int, unsigned int, double, bool, short unsigned int)’:
lp.cpp:495:24: note: declared here
  495 |   arma::Col<short int> values_vec(dist_v);
      |                        ^~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lp_filling.cpp -o lp_filling.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lp_filling_R.cpp -o lp_filling_R.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lp_vcov.cpp -o lp_vcov.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ols.cpp -o ols.o
In file included from /usr/include/x86_64-linux-gnu/c++/16/bits/c++allocator.h:33,
                 from /usr/include/c++/16/bits/allocator.h:46,
                 from /usr/include/c++/16/bits/alloc_traits.h:39,
                 from /usr/include/c++/16/ext/alloc_traits.h:36,
                 from /usr/include/c++/16/bits/hashtable_policy.h:40,
                 from /usr/include/c++/16/bits/hashtable.h:37,
                 from /usr/include/c++/16/bits/unordered_map.h:33,
                 from /usr/include/c++/16/unordered_map:43,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/platform/compiler.h:39,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:67,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ols.cpp:1:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = short int]’,
    inlined from ‘static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = short int]’ at /usr/include/c++/16/bits/alloc_traits.h:689:23,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:398:19,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:394:7,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:378:15,
    inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = short int; _Alloc = std::allocator<short int>]’ at /usr/include/c++/16/bits/stl_vector.h:795:7,
    inlined from ‘arma::mat ols_s_b(arma::mat&, unsigned int, unsigned int, double, arma::mat&, arma::vec&, unsigned int, bool, short unsigned int)’ at ols.cpp:496:10:
/usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘void operator delete(void*, std::size_t)’ called on unallocated object ‘values_vec’ [-Wfree-nonheap-object]
  183 |         _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
      |                                                                  ^
ols.cpp: In function ‘arma::mat ols_s_b(arma::mat&, unsigned int, unsigned int, double, arma::mat&, arma::vec&, unsigned int, bool, short unsigned int)’:
ols.cpp:494:24: note: declared here
  494 |   arma::Col<short int> values_vec(dist_v);
      |                        ^~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c openmp_installed.cpp -o openmp_installed.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c time_dist.cpp -o time_dist.o
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o conleyreg.so RcppExports.o XeeXhC.o XeeXhC_R.o dist_mat.o distance_functions.o distance_matrices.o isbalanced.o lp.o lp_filling.o lp_filling_R.o lp_vcov.o ols.o openmp_installed.o time_dist.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAuASl2/R.INSTALL2e1f13720404d/conleyreg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAuASl2/R.INSTALL2e1f13720404d/conleyreg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAuASl2/R.INSTALL2e1f13720404d/conleyreg/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-conleyreg/00new/conleyreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (conleyreg)