Install log for 'colvR'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘colvR’ ...
** this is package ‘colvR’ version ‘0.2.2’
** package ‘colvR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplRx2ua/R.INSTALL2eb2d17e2c5d03/colvR/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nlopt_wrapper.cpp -o nlopt_wrapper.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_ZIP.cpp -o optim_rank_ZIP.o
In file included from optim_rank_ZIP.cpp:15:
Elbo_gradBB.h: In function ‘std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)’:
Elbo_gradBB.h:107:9: warning: unused variable ‘n’ [-Wunused-variable]
  107 |     int n = Y.n_rows;
      |         ^
Elbo_gradBB.h:108:9: warning: unused variable ‘p’ [-Wunused-variable]
  108 |     int p = Y.n_cols;
      |         ^
Elbo_gradBB.h:109:9: warning: unused variable ‘q’ [-Wunused-variable]
  109 |     int q = M.n_cols;
      |         ^
optim_rank_ZIP.cpp: In lambda function:
optim_rank_ZIP.cpp:224:9: warning: unused variable ‘q’ [-Wunused-variable]
  224 |     int q = M.n_cols;
      |         ^
optim_rank_ZIP.cpp:225:9: warning: unused variable ‘d’ [-Wunused-variable]
  225 |     int d = X.n_cols;
      |         ^
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_ZIP_M.cpp -o optim_rank_ZIP_M.o
In file included from optim_rank_ZIP_M.cpp:15:
Elbo_gradBB.h: In function ‘std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)’:
Elbo_gradBB.h:107:9: warning: unused variable ‘n’ [-Wunused-variable]
  107 |     int n = Y.n_rows;
      |         ^
Elbo_gradBB.h:108:9: warning: unused variable ‘p’ [-Wunused-variable]
  108 |     int p = Y.n_cols;
      |         ^
Elbo_gradBB.h:109:9: warning: unused variable ‘q’ [-Wunused-variable]
  109 |     int q = M.n_cols;
      |         ^
optim_rank_ZIP_M.cpp: In lambda function:
optim_rank_ZIP_M.cpp:123:9: warning: unused variable ‘d’ [-Wunused-variable]
  123 |     int d = X.n_cols;
      |         ^
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_ZIP_VE.cpp -o optim_rank_ZIP_VE.o
In file included from optim_rank_ZIP_VE.cpp:15:
Elbo_gradBB.h: In function ‘std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)’:
Elbo_gradBB.h:107:9: warning: unused variable ‘n’ [-Wunused-variable]
  107 |     int n = Y.n_rows;
      |         ^
Elbo_gradBB.h:108:9: warning: unused variable ‘p’ [-Wunused-variable]
  108 |     int p = Y.n_cols;
      |         ^
Elbo_gradBB.h:109:9: warning: unused variable ‘q’ [-Wunused-variable]
  109 |     int q = M.n_cols;
      |         ^
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_ZIP_alternate.cpp -o optim_rank_ZIP_alternate.o
In file included from optim_rank_ZIP_alternate.cpp:15:
Elbo_gradBB.h: In function ‘std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)’:
Elbo_gradBB.h:107:9: warning: unused variable ‘n’ [-Wunused-variable]
  107 |     int n = Y.n_rows;
      |         ^
Elbo_gradBB.h:108:9: warning: unused variable ‘p’ [-Wunused-variable]
  108 |     int p = Y.n_cols;
      |         ^
Elbo_gradBB.h:109:9: warning: unused variable ‘q’ [-Wunused-variable]
  109 |     int q = M.n_cols;
      |         ^
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_ZIP_q0.cpp -o optim_rank_ZIP_q0.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_cov.cpp -o optim_rank_cov.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_cov_inter.cpp -o optim_rank_cov_inter.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c optim_rank_zip_log.cpp -o optim_rank_zip_log.o
In file included from optim_rank_zip_log.cpp:15:
Elbo_gradBB.h: In function ‘std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)’:
Elbo_gradBB.h:107:9: warning: unused variable ‘n’ [-Wunused-variable]
  107 |     int n = Y.n_rows;
      |         ^
Elbo_gradBB.h:108:9: warning: unused variable ‘p’ [-Wunused-variable]
  108 |     int p = Y.n_cols;
      |         ^
Elbo_gradBB.h:109:9: warning: unused variable ‘q’ [-Wunused-variable]
  109 |     int q = M.n_cols;
      |         ^
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utilsBB.cpp -o utilsBB.o
utilsBB.cpp: In function ‘arma::mat GradB(const arma::vec&, const arma::mat&, const arma::vec&, const arma::vec&, const arma::vec&)’:
utilsBB.cpp:132:7: warning: unused variable ‘l’ [-Wunused-variable]
  132 |   int l = vecY.size();
      |       ^
utilsBB.cpp: In function ‘arma::mat GradC(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)’:
utilsBB.cpp:150:7: warning: unused variable ‘n’ [-Wunused-variable]
  150 |   int n = Y.n_rows;
      |       ^
utilsBB.cpp:151:7: warning: unused variable ‘p’ [-Wunused-variable]
  151 |   int p = Y.n_cols;
      |       ^
utilsBB.cpp: In function ‘arma::mat GradM(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)’:
utilsBB.cpp:175:7: warning: unused variable ‘n’ [-Wunused-variable]
  175 |   int n = Y.n_rows;
      |       ^
utilsBB.cpp:176:7: warning: unused variable ‘p’ [-Wunused-variable]
  176 |   int p = Y.n_cols;
      |       ^
utilsBB.cpp: In function ‘arma::mat GradS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)’:
utilsBB.cpp:200:7: warning: unused variable ‘n’ [-Wunused-variable]
  200 |   int n = A.n_rows;
      |       ^
utilsBB.cpp:201:7: warning: unused variable ‘p’ [-Wunused-variable]
  201 |   int p = A.n_cols;
      |       ^
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o colvR.so RcppExports.o nlopt_wrapper.o optim_rank_ZIP.o optim_rank_ZIP_M.o optim_rank_ZIP_VE.o optim_rank_ZIP_alternate.o optim_rank_ZIP_q0.o optim_rank_cov.o optim_rank_cov_inter.o optim_rank_zip_log.o utilsBB.o -lnlopt -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplRx2ua/R.INSTALL2eb2d17e2c5d03/colvR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplRx2ua/R.INSTALL2eb2d17e2c5d03/colvR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplRx2ua/R.INSTALL2eb2d17e2c5d03/colvR/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-colvR/00new/colvR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (colvR)