• using R Under development (unstable) (2026-02-02 r89367)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-12) 15.2.0     GNU Fortran (Debian 15.2.0-12) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-02-03 14:25:29Z
• checking for file ‘cohortBuilder/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘cohortBuilder’ version ‘0.3.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cohortBuilder’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/11s] OK
• checking Rd files ... [0s/1s] OK
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• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/6s] ERROR   Running ‘testthat.R’ [4s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(cohortBuilder)      Attaching package: 'cohortBuilder'      The following objects are masked from 'package:stats':          filter, step      >   > test_check("cohortBuilder")   Saving _problems/test-filter-63.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 270 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-filter.R:63:3'): Multi discrete filter works fine ──────────────   Error in `dplyr::filter(., dplyr::across(!!names(values), ~col_in_val(.x, values[[dplyr::cur_column()]], !!keep_na)))`: i In argument: `dplyr::across(...)`.   Caused by error:   ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object.   i If you used `across()` to generate this data frame, please use `if_any()` or `if_all()` instead.   Backtrace:        ▆     1. ├─coh$run_flow() at test-filter.R:63:3     2. │ └─self$run_step(data_idx) at cohortBuilder/R/cohort_methods.R:633:9     3. │ └─temp_data_object %>% data_filter$filter_data() at cohortBuilder/R/cohort_methods.R:656:9     4. ├─data_filter$filter_data(.)     5. │ └─data_object[[dataset]] %>% ... at cohortBuilder/R/source_tblist.R:587:7     6. ├─dplyr::filter(...)     7. ├─dplyr:::filter.data.frame(...)     8. │ └─dplyr:::filter_impl(...)     9. │ └─dplyr:::filter_rows(...)    10. │ └─dplyr:::filter_eval(...)    11. │ ├─base::withCallingHandlers(...)    12. │ └─mask$eval_all_filter(dots_expanded, invert, env_filter)    13. │ └─dplyr (local) eval()    14. ├─dplyr:::dplyr_internal_error(...)    15. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)    16. │ └─rlang:::signal_abort(cnd, .file)    17. │ └─base::signalCondition(cnd)    18. └─dplyr (local) `<fn>`(`<dpl:::__>`)    19. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 270 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [16s/23s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [3s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR