• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:02:51 UTC
• checking for file ‘cohortBuilder/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘cohortBuilder’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cohortBuilder’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/12s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [22s/24s] OK   Running ‘testthat.R’ [22s/24s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [20s/24s] OK
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0rKz7q’ ‘~/tmp/scratch/Rtmp0taVHV’   ‘~/tmp/scratch/Rtmp1BZ13B’ ‘~/tmp/scratch/Rtmp1Ie9Bq’   ‘~/tmp/scratch/Rtmp1LSlY4’ ‘~/tmp/scratch/Rtmp1bjITY’   ‘~/tmp/scratch/Rtmp1u5uOu’ ‘~/tmp/scratch/Rtmp25MNa2’   ‘~/tmp/scratch/Rtmp2H5LOW’ ‘~/tmp/scratch/Rtmp3BbcHR’   ‘~/tmp/scratch/Rtmp4TPTbB’ ‘~/tmp/scratch/Rtmp4aLVf5’   ‘~/tmp/scratch/Rtmp5HR7wL’ ‘~/tmp/scratch/Rtmp65rP1F’   ‘~/tmp/scratch/Rtmp6UehX4’ ‘~/tmp/scratch/Rtmp8Gqqy5’   ‘~/tmp/scratch/Rtmp8dd5Sq’ ‘~/tmp/scratch/Rtmp8nns4t’   ‘~/tmp/scratch/Rtmp9aK0FA’ ‘~/tmp/scratch/RtmpAIVom9’   ‘~/tmp/scratch/RtmpBnh5n1’ ‘~/tmp/scratch/RtmpC06vgO’   ‘~/tmp/scratch/RtmpCHuGmX’ ‘~/tmp/scratch/RtmpCKnutY’   ‘~/tmp/scratch/RtmpCWrxgr’ ‘~/tmp/scratch/RtmpD4zN1e’   ‘~/tmp/scratch/RtmpDY65ph’ ‘~/tmp/scratch/RtmpDelb0H’   ‘~/tmp/scratch/RtmpE0CINC’ ‘~/tmp/scratch/RtmpEI9nAl’   ‘~/tmp/scratch/RtmpEqzkJY’ ‘~/tmp/scratch/RtmpFI2hkT’   ‘~/tmp/scratch/RtmpHRe7Wj’ ‘~/tmp/scratch/RtmpI0k5QC’   ‘~/tmp/scratch/RtmpIfVeRe’ ‘~/tmp/scratch/RtmpJHVQYR’   ‘~/tmp/scratch/RtmpK83o6u’ ‘~/tmp/scratch/RtmpKOvpU4’   ‘~/tmp/scratch/RtmpKq5cjd’ ‘~/tmp/scratch/RtmpLKoT3W’   ‘~/tmp/scratch/RtmpLrIwLF’ ‘~/tmp/scratch/RtmpLuzQ0P’   ‘~/tmp/scratch/RtmpLxOwHs’ ‘~/tmp/scratch/RtmpN7Lf1q’   ‘~/tmp/scratch/RtmpNF5Rax’ ‘~/tmp/scratch/RtmpPPvycl’   ‘~/tmp/scratch/RtmpPVFCvs’ ‘~/tmp/scratch/RtmpPrz9hF’   ‘~/tmp/scratch/RtmpPtf5gF’ ‘~/tmp/scratch/RtmpPyKyNx’   ‘~/tmp/scratch/RtmpQBq06Q’ ‘~/tmp/scratch/RtmpQiSMd5’   ‘~/tmp/scratch/RtmpQohL3j’ ‘~/tmp/scratch/RtmpSBiUHl’   ‘~/tmp/scratch/RtmpSkVzTI’ ‘~/tmp/scratch/RtmpSmzfIb’   ‘~/tmp/scratch/RtmpTErTI5’ ‘~/tmp/scratch/RtmpTIR3Wb’   ‘~/tmp/scratch/RtmpTOTtKD’ ‘~/tmp/scratch/RtmpTiIuqn’   ‘~/tmp/scratch/RtmpTmCyea’ ‘~/tmp/scratch/RtmpUmLg27’   ‘~/tmp/scratch/RtmpUqT37R’ ‘~/tmp/scratch/RtmpVHTfNs’   ‘~/tmp/scratch/RtmpX9AHsI’ ‘~/tmp/scratch/RtmpXBNkc8’   ‘~/tmp/scratch/RtmpXUBsD9’ ‘~/tmp/scratch/RtmpXdTjCC’   ‘~/tmp/scratch/RtmpY9XfJB’ ‘~/tmp/scratch/RtmpYvE0TV’   ‘~/tmp/scratch/RtmpZX9Sfl’ ‘~/tmp/scratch/RtmpZb6ieS’   ‘~/tmp/scratch/RtmpaN6SE0’ ‘~/tmp/scratch/Rtmpae5dzN’   ‘~/tmp/scratch/Rtmpaq5Ad5’ ‘~/tmp/scratch/RtmpcWoqQT’   ‘~/tmp/scratch/RtmpdJhQ4c’ ‘~/tmp/scratch/RtmpdMygs1’   ‘~/tmp/scratch/RtmpdedF0j’ ‘~/tmp/scratch/RtmpdoVxr2’   ‘~/tmp/scratch/RtmpdvXTy5’ ‘~/tmp/scratch/Rtmpe5xHsN’   ‘~/tmp/scratch/Rtmpenvond’ ‘~/tmp/scratch/RtmperHn8P’   ‘~/tmp/scratch/RtmpetNZh2’ ‘~/tmp/scratch/RtmpfEg6Gj’   ‘~/tmp/scratch/RtmpftBZxC’ ‘~/tmp/scratch/RtmpfuupDu’   ‘~/tmp/scratch/Rtmpguxs3g’ ‘~/tmp/scratch/RtmpgxBgVc’   ‘~/tmp/scratch/Rtmph1Uuvl’ ‘~/tmp/scratch/RtmphWRxK2’   ‘~/tmp/scratch/RtmphXVskk’ ‘~/tmp/scratch/RtmphyT75b’   ‘~/tmp/scratch/Rtmpi93DHA’ ‘~/tmp/scratch/RtmpiYH4Lz’   ‘~/tmp/scratch/RtmpisFjfn’ ‘~/tmp/scratch/Rtmpj6hQIS’   ‘~/tmp/scratch/RtmpjTVCsv’ ‘~/tmp/scratch/RtmpjwNsrk’   ‘~/tmp/scratch/Rtmpk1viFZ’ ‘~/tmp/scratch/RtmpkCWRWw’   ‘~/tmp/scratch/RtmpkyciiF’ ‘~/tmp/scratch/Rtmpl46JZJ’   ‘~/tmp/scratch/RtmplzaDLF’ ‘~/tmp/scratch/RtmpmPELN0’   ‘~/tmp/scratch/RtmpmX9o0O’ ‘~/tmp/scratch/RtmpmyeXxQ’   ‘~/tmp/scratch/Rtmpn1bnvi’ ‘~/tmp/scratch/RtmpnCwSJ3’   ‘~/tmp/scratch/RtmpnRn3Gg’ ‘~/tmp/scratch/Rtmpo4THkW’   ‘~/tmp/scratch/Rtmpob4uFq’ ‘~/tmp/scratch/RtmpohITIC’   ‘~/tmp/scratch/Rtmpoz1O74’ ‘~/tmp/scratch/RtmppBPtwF’   ‘~/tmp/scratch/RtmppIT6zG’ ‘~/tmp/scratch/RtmppaFymf’   ‘~/tmp/scratch/RtmppoAmyj’ ‘~/tmp/scratch/RtmpqNa1ZE’   ‘~/tmp/scratch/RtmpqcLeVH’ ‘~/tmp/scratch/Rtmpr463lR’   ‘~/tmp/scratch/Rtmprv44VH’ ‘~/tmp/scratch/RtmptRBUx6’   ‘~/tmp/scratch/RtmpthJARM’ ‘~/tmp/scratch/Rtmpu9o76I’   ‘~/tmp/scratch/RtmpuZ3ko8’ ‘~/tmp/scratch/Rtmpv9sL1j’   ‘~/tmp/scratch/RtmpvsjcO0’ ‘~/tmp/scratch/RtmpwHQxd7’   ‘~/tmp/scratch/Rtmpx13fY8’ ‘~/tmp/scratch/Rtmpx3LRnq’   ‘~/tmp/scratch/RtmpxHY4fZ’ ‘~/tmp/scratch/RtmpxOuHCn’   ‘~/tmp/scratch/Rtmpxh3NbU’ ‘~/tmp/scratch/RtmpyGncIs’   ‘~/tmp/scratch/RtmpyI0HCu’ ‘~/tmp/scratch/RtmpyOPCoh’   ‘~/tmp/scratch/RtmpybhMUx’ ‘~/tmp/scratch/Rtmpye6HGK’   ‘~/tmp/scratch/Rtmpyud3aj’ ‘~/tmp/scratch/xvfb-run.0DgGAX’   ‘~/tmp/scratch/xvfb-run.2XfTX3’ ‘~/tmp/scratch/xvfb-run.5tU6yC’   ‘~/tmp/scratch/xvfb-run.67TUkN’ ‘~/tmp/scratch/xvfb-run.6rkb6M’   ‘~/tmp/scratch/xvfb-run.7LQDdC’ ‘~/tmp/scratch/xvfb-run.8xy7y6’   ‘~/tmp/scratch/xvfb-run.8yyN3e’ ‘~/tmp/scratch/xvfb-run.AIch6Y’   ‘~/tmp/scratch/xvfb-run.CW8Sk1’ ‘~/tmp/scratch/xvfb-run.CbJLhJ’   ‘~/tmp/scratch/xvfb-run.Dk1dRt’ ‘~/tmp/scratch/xvfb-run.ESPC5y’   ‘~/tmp/scratch/xvfb-run.Er6qAS’ ‘~/tmp/scratch/xvfb-run.Es1LOy’   ‘~/tmp/scratch/xvfb-run.Fuaogk’ ‘~/tmp/scratch/xvfb-run.G9TVyG’   ‘~/tmp/scratch/xvfb-run.GBmPWS’ ‘~/tmp/scratch/xvfb-run.GBnLAT’   ‘~/tmp/scratch/xvfb-run.GXy2KD’ ‘~/tmp/scratch/xvfb-run.GgZvjR’   ‘~/tmp/scratch/xvfb-run.GhK2Ot’ ‘~/tmp/scratch/xvfb-run.Hq68rF’   ‘~/tmp/scratch/xvfb-run.IZRLS2’ ‘~/tmp/scratch/xvfb-run.IqJ1Bk’   ‘~/tmp/scratch/xvfb-run.JhQqPj’ ‘~/tmp/scratch/xvfb-run.KYlGf8’   ‘~/tmp/scratch/xvfb-run.M3mtBU’ ‘~/tmp/scratch/xvfb-run.PvOsQZ’   ‘~/tmp/scratch/xvfb-run.Q3NKB7’ ‘~/tmp/scratch/xvfb-run.T2Ewus’   ‘~/tmp/scratch/xvfb-run.UeaAIS’ ‘~/tmp/scratch/xvfb-run.Uvu171’   ‘~/tmp/scratch/xvfb-run.VABlF5’ ‘~/tmp/scratch/xvfb-run.VFxDe4’   ‘~/tmp/scratch/xvfb-run.XRe0yX’ ‘~/tmp/scratch/xvfb-run.Y77rnv’   ‘~/tmp/scratch/xvfb-run.ZXFl9J’ ‘~/tmp/scratch/xvfb-run.bjASQk’   ‘~/tmp/scratch/xvfb-run.cAjvJJ’ ‘~/tmp/scratch/xvfb-run.cDgpQz’   ‘~/tmp/scratch/xvfb-run.e5JAPQ’ ‘~/tmp/scratch/xvfb-run.eq9i7u’   ‘~/tmp/scratch/xvfb-run.ge3AlG’ ‘~/tmp/scratch/xvfb-run.gvFbTK’   ‘~/tmp/scratch/xvfb-run.hBhbBS’ ‘~/tmp/scratch/xvfb-run.hK3Aet’   ‘~/tmp/scratch/xvfb-run.hKxo21’ ‘~/tmp/scratch/xvfb-run.hsE9Vi’   ‘~/tmp/scratch/xvfb-run.hu6eOE’ ‘~/tmp/scratch/xvfb-run.iaxSO7’   ‘~/tmp/scratch/xvfb-run.jSOVM2’ ‘~/tmp/scratch/xvfb-run.k24gsS’   ‘~/tmp/scratch/xvfb-run.lwADxu’ ‘~/tmp/scratch/xvfb-run.mC4Qr6’   ‘~/tmp/scratch/xvfb-run.pTxCQE’ ‘~/tmp/scratch/xvfb-run.qmzvHx’   ‘~/tmp/scratch/xvfb-run.tcabF8’ ‘~/tmp/scratch/xvfb-run.twoSah’   ‘~/tmp/scratch/xvfb-run.vD1Fed’ ‘~/tmp/scratch/xvfb-run.wUAmLO’   ‘~/tmp/scratch/xvfb-run.wxwGdh’ ‘~/tmp/scratch/xvfb-run.x0KX6e’   ‘~/tmp/scratch/xvfb-run.yMsLHL’ ‘~/tmp/scratch/xvfb-run.yPARfC’
• DONE

Status: 1 NOTE