• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 14:02:49 UTC
• checking for file ‘cograph/DESCRIPTION’ ... OK
• this is package ‘cograph’ version ‘2.4.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [4s/5s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cograph’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [89s/116s] OK
• checking Rd files ... [2s/3s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [36s/48s] OK Examples with CPU (user + system) or elapsed time > 5s                   user system elapsed plot_transitions 3.897 0.052 6.543
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [46s/65s] OK   Running ‘testthat.R’ [46s/64s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/13s] OK
• checking PDF version of manual ... [19s/26s] OK
• checking HTML version of manual ... [10s/14s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp09ZX5L’ ‘~/tmp/scratch/Rtmp14W2pO’   ‘~/tmp/scratch/Rtmp15JPYX’ ‘~/tmp/scratch/Rtmp23k1Bv’   ‘~/tmp/scratch/Rtmp28kcO6’ ‘~/tmp/scratch/Rtmp2HJ8f4’   ‘~/tmp/scratch/Rtmp2UBo85’ ‘~/tmp/scratch/Rtmp2xs6f5’   ‘~/tmp/scratch/Rtmp3YFpV1’ ‘~/tmp/scratch/Rtmp3hrVvu’   ‘~/tmp/scratch/Rtmp3hwcCU’ ‘~/tmp/scratch/Rtmp3ripz1’   ‘~/tmp/scratch/Rtmp3vrx6d’ ‘~/tmp/scratch/Rtmp41zm9a’   ‘~/tmp/scratch/Rtmp4Ck1yF’ ‘~/tmp/scratch/Rtmp4SO1rA’   ‘~/tmp/scratch/Rtmp4y7EHd’ ‘~/tmp/scratch/Rtmp57uink’   ‘~/tmp/scratch/Rtmp5wGfPI’ ‘~/tmp/scratch/Rtmp68Rjx5’   ‘~/tmp/scratch/Rtmp6GCcCf’ ‘~/tmp/scratch/Rtmp6RvUdq’   ‘~/tmp/scratch/Rtmp6YvqZH’ ‘~/tmp/scratch/Rtmp6dOdL2’   ‘~/tmp/scratch/Rtmp6w70l6’ ‘~/tmp/scratch/Rtmp7QYYD0’   ‘~/tmp/scratch/Rtmp7R5oPU’ ‘~/tmp/scratch/Rtmp7Recqc’   ‘~/tmp/scratch/Rtmp7UV7s6’ ‘~/tmp/scratch/Rtmp87Vkmt’   ‘~/tmp/scratch/RtmpARQA9X’ ‘~/tmp/scratch/RtmpAnfbvk’   ‘~/tmp/scratch/RtmpB0GlP2’ ‘~/tmp/scratch/RtmpB6lWTv’   ‘~/tmp/scratch/RtmpBDnfv1’ ‘~/tmp/scratch/RtmpByUGmG’   ‘~/tmp/scratch/RtmpC9eIzl’ ‘~/tmp/scratch/RtmpCCGekE’   ‘~/tmp/scratch/RtmpCpPGdJ’ ‘~/tmp/scratch/RtmpD10nFV’   ‘~/tmp/scratch/RtmpDF5LJP’ ‘~/tmp/scratch/RtmpEAfETW’   ‘~/tmp/scratch/RtmpEKzbDa’ ‘~/tmp/scratch/RtmpFSqzty’   ‘~/tmp/scratch/RtmpFvsP0k’ ‘~/tmp/scratch/RtmpFxfS3u’   ‘~/tmp/scratch/RtmpGhPpuw’ ‘~/tmp/scratch/RtmpGttTmN’   ‘~/tmp/scratch/RtmpHAduLV’ ‘~/tmp/scratch/RtmpHtfqbb’   ‘~/tmp/scratch/RtmpHwBT8k’ ‘~/tmp/scratch/RtmpIcsKkH’   ‘~/tmp/scratch/RtmpIqeM1w’ ‘~/tmp/scratch/RtmpJ5FiMu’   ‘~/tmp/scratch/RtmpJGQDrF’ ‘~/tmp/scratch/RtmpJYfDXV’   ‘~/tmp/scratch/RtmpJcXpma’ ‘~/tmp/scratch/RtmpK4vz31’   ‘~/tmp/scratch/RtmpKCxrFR’ ‘~/tmp/scratch/RtmpKFYRal’   ‘~/tmp/scratch/RtmpKFewuG’ ‘~/tmp/scratch/RtmpKaVtTb’   ‘~/tmp/scratch/RtmpKmtiZN’ ‘~/tmp/scratch/RtmpLPSQRG’   ‘~/tmp/scratch/RtmpLoDD9U’ ‘~/tmp/scratch/RtmpLyTuzV’   ‘~/tmp/scratch/RtmpMILp7u’ ‘~/tmp/scratch/RtmpMZvcZT’   ‘~/tmp/scratch/RtmpMhsRyu’ ‘~/tmp/scratch/RtmpMtIvKW’   ‘~/tmp/scratch/RtmpO0ECKU’ ‘~/tmp/scratch/RtmpOJeAa2’   ‘~/tmp/scratch/RtmpOpqy6w’ ‘~/tmp/scratch/RtmpP344A0’   ‘~/tmp/scratch/RtmpPewkt8’ ‘~/tmp/scratch/RtmpPoLTIS’   ‘~/tmp/scratch/RtmpQ8MR4N’ ‘~/tmp/scratch/RtmpQCrUnl’   ‘~/tmp/scratch/RtmpR6ad7U’ ‘~/tmp/scratch/RtmpRhBKR0’   ‘~/tmp/scratch/RtmpS5Q6tD’ ‘~/tmp/scratch/RtmpShijCo’   ‘~/tmp/scratch/RtmpT2pZIJ’ ‘~/tmp/scratch/RtmpTPt2Dw’   ‘~/tmp/scratch/RtmpTYjO8T’ ‘~/tmp/scratch/RtmpTogayi’   ‘~/tmp/scratch/RtmpU29EXG’ ‘~/tmp/scratch/RtmpVD4nix’   ‘~/tmp/scratch/RtmpVgt2Np’ ‘~/tmp/scratch/RtmpVhWvD6’   ‘~/tmp/scratch/RtmpW71v8S’ ‘~/tmp/scratch/RtmpWDjFRm’   ‘~/tmp/scratch/RtmpWVR9IO’ ‘~/tmp/scratch/RtmpWkpLEO’   ‘~/tmp/scratch/RtmpX3l3vs’ ‘~/tmp/scratch/RtmpX9AHsI’   ‘~/tmp/scratch/RtmpXuFNBS’ ‘~/tmp/scratch/RtmpYbwoWS’   ‘~/tmp/scratch/RtmpYsyT0i’ ‘~/tmp/scratch/RtmpYvWTBa’   ‘~/tmp/scratch/RtmpZ3y8g6’ ‘~/tmp/scratch/RtmpZfTRy4’   ‘~/tmp/scratch/RtmpZzf2me’ ‘~/tmp/scratch/RtmpaQjhYu’   ‘~/tmp/scratch/RtmpagHxoZ’ ‘~/tmp/scratch/Rtmpaid5de’   ‘~/tmp/scratch/RtmpatKlxX’ ‘~/tmp/scratch/RtmpbBLmpY’   ‘~/tmp/scratch/RtmpbIaD03’ ‘~/tmp/scratch/RtmpbmeY3R’   ‘~/tmp/scratch/RtmpboUyOC’ ‘~/tmp/scratch/Rtmpbyn0vu’   ‘~/tmp/scratch/RtmpbzE6zD’ ‘~/tmp/scratch/Rtmpc0MTYh’   ‘~/tmp/scratch/Rtmpd3bk7N’ ‘~/tmp/scratch/Rtmpd815BF’   ‘~/tmp/scratch/RtmpdkX63B’ ‘~/tmp/scratch/Rtmpe6LYRV’   ‘~/tmp/scratch/RtmpeBAaNL’ ‘~/tmp/scratch/RtmpeI8tR3’   ‘~/tmp/scratch/RtmpeQLA0L’ ‘~/tmp/scratch/RtmpeaYrz1’   ‘~/tmp/scratch/RtmpeweFCQ’ ‘~/tmp/scratch/RtmpfOs6Ar’   ‘~/tmp/scratch/Rtmpg7LAdc’ ‘~/tmp/scratch/RtmpgNBT5e’   ‘~/tmp/scratch/Rtmph3hP29’ ‘~/tmp/scratch/Rtmph8dH02’   ‘~/tmp/scratch/RtmphfO76q’ ‘~/tmp/scratch/RtmphgH3pW’   ‘~/tmp/scratch/RtmpiGQYaA’ ‘~/tmp/scratch/RtmpiKkdMc’   ‘~/tmp/scratch/Rtmpk7rDTA’ ‘~/tmp/scratch/RtmpkheKfh’   ‘~/tmp/scratch/RtmplVyRIQ’ ‘~/tmp/scratch/RtmplgdMjt’   ‘~/tmp/scratch/RtmpnDd4ec’ ‘~/tmp/scratch/RtmpnTqHQg’   ‘~/tmp/scratch/RtmpnbtzjF’ ‘~/tmp/scratch/RtmpoHaLyK’   ‘~/tmp/scratch/Rtmpod3Vyh’ ‘~/tmp/scratch/RtmpotQWXB’   ‘~/tmp/scratch/RtmppnOXl7’ ‘~/tmp/scratch/RtmpqncpD2’   ‘~/tmp/scratch/Rtmpqx92yu’ ‘~/tmp/scratch/RtmprLRYvB’   ‘~/tmp/scratch/RtmpsAK0XX’ ‘~/tmp/scratch/RtmpsM7Nnj’   ‘~/tmp/scratch/RtmpsbDkMt’ ‘~/tmp/scratch/Rtmpt0bXBk’   ‘~/tmp/scratch/Rtmpt9EXMM’ ‘~/tmp/scratch/RtmptPchtq’   ‘~/tmp/scratch/RtmptWzNJo’ ‘~/tmp/scratch/RtmpuQoEf7’   ‘~/tmp/scratch/Rtmpum5Mzb’ ‘~/tmp/scratch/Rtmpur1ITS’   ‘~/tmp/scratch/RtmpvO9GUo’ ‘~/tmp/scratch/Rtmpvcl14N’   ‘~/tmp/scratch/RtmpwEX1eL’ ‘~/tmp/scratch/Rtmpwptfdi’   ‘~/tmp/scratch/Rtmpwr8OZz’ ‘~/tmp/scratch/RtmpxKHxye’   ‘~/tmp/scratch/RtmpxPfgny’ ‘~/tmp/scratch/Rtmpy2HcLA’   ‘~/tmp/scratch/RtmpyI0HCu’ ‘~/tmp/scratch/RtmpyQjIyk’   ‘~/tmp/scratch/RtmpygJ3FH’ ‘~/tmp/scratch/RtmpzBye8N’   ‘~/tmp/scratch/RtmpzZNcmM’ ‘~/tmp/scratch/ccnRrG5o.s’   ‘~/tmp/scratch/xvfb-run.1M1QDI’ ‘~/tmp/scratch/xvfb-run.1sXWDr’   ‘~/tmp/scratch/xvfb-run.34R6go’ ‘~/tmp/scratch/xvfb-run.3mdiTD’   ‘~/tmp/scratch/xvfb-run.4qBSwF’ ‘~/tmp/scratch/xvfb-run.4ruvgI’   ‘~/tmp/scratch/xvfb-run.6rkb6M’ ‘~/tmp/scratch/xvfb-run.7rcdoM’   ‘~/tmp/scratch/xvfb-run.8fvlj6’ ‘~/tmp/scratch/xvfb-run.9XpiNW’   ‘~/tmp/scratch/xvfb-run.9o60ii’ ‘~/tmp/scratch/xvfb-run.9sUK5T’   ‘~/tmp/scratch/xvfb-run.AAQnqm’ ‘~/tmp/scratch/xvfb-run.AP7xB5’   ‘~/tmp/scratch/xvfb-run.ARdDFK’ ‘~/tmp/scratch/xvfb-run.D0DFUD’   ‘~/tmp/scratch/xvfb-run.DMCrpa’ ‘~/tmp/scratch/xvfb-run.DUEX7i’   ‘~/tmp/scratch/xvfb-run.FEqZxc’ ‘~/tmp/scratch/xvfb-run.Fn4cQy’   ‘~/tmp/scratch/xvfb-run.I3N26i’ ‘~/tmp/scratch/xvfb-run.J40cEq’   ‘~/tmp/scratch/xvfb-run.JggcB9’ ‘~/tmp/scratch/xvfb-run.LQDfpI’   ‘~/tmp/scratch/xvfb-run.Lpbftz’ ‘~/tmp/scratch/xvfb-run.OAD6iN’   ‘~/tmp/scratch/xvfb-run.ORv7lB’ ‘~/tmp/scratch/xvfb-run.OS3aoF’   ‘~/tmp/scratch/xvfb-run.OrrtEK’ ‘~/tmp/scratch/xvfb-run.P5rBjm’   ‘~/tmp/scratch/xvfb-run.QNTRgp’ ‘~/tmp/scratch/xvfb-run.RXvrbI’   ‘~/tmp/scratch/xvfb-run.Rkvvwo’ ‘~/tmp/scratch/xvfb-run.TwTM03’   ‘~/tmp/scratch/xvfb-run.ULimxm’ ‘~/tmp/scratch/xvfb-run.UX8Vq3’   ‘~/tmp/scratch/xvfb-run.V1SxO6’ ‘~/tmp/scratch/xvfb-run.W4YxpP’   ‘~/tmp/scratch/xvfb-run.W8oEKA’ ‘~/tmp/scratch/xvfb-run.WKwus4’   ‘~/tmp/scratch/xvfb-run.X0JZWL’ ‘~/tmp/scratch/xvfb-run.X3abMO’   ‘~/tmp/scratch/xvfb-run.XaR8l7’ ‘~/tmp/scratch/xvfb-run.XruQw7’   ‘~/tmp/scratch/xvfb-run.YOvGZR’ ‘~/tmp/scratch/xvfb-run.YQfNnj’   ‘~/tmp/scratch/xvfb-run.Yg73s5’ ‘~/tmp/scratch/xvfb-run.Z0jxKc’   ‘~/tmp/scratch/xvfb-run.ZZKJLn’ ‘~/tmp/scratch/xvfb-run.Zu0y13’   ‘~/tmp/scratch/xvfb-run.a14pmB’ ‘~/tmp/scratch/xvfb-run.anHBEN’   ‘~/tmp/scratch/xvfb-run.b50ONw’ ‘~/tmp/scratch/xvfb-run.bttbcc’   ‘~/tmp/scratch/xvfb-run.cJK9QX’ ‘~/tmp/scratch/xvfb-run.etgna0’   ‘~/tmp/scratch/xvfb-run.hUzu07’ ‘~/tmp/scratch/xvfb-run.hzFvuO’   ‘~/tmp/scratch/xvfb-run.jAOYrV’ ‘~/tmp/scratch/xvfb-run.kK8Lxp’   ‘~/tmp/scratch/xvfb-run.lhKT0H’ ‘~/tmp/scratch/xvfb-run.nCtFD6’   ‘~/tmp/scratch/xvfb-run.ndmZ4Z’ ‘~/tmp/scratch/xvfb-run.nkYoP0’   ‘~/tmp/scratch/xvfb-run.oZsGKA’ ‘~/tmp/scratch/xvfb-run.p7b0JX’   ‘~/tmp/scratch/xvfb-run.qNKpnD’ ‘~/tmp/scratch/xvfb-run.qSmpDj’   ‘~/tmp/scratch/xvfb-run.rGpgoj’ ‘~/tmp/scratch/xvfb-run.rjarOP’   ‘~/tmp/scratch/xvfb-run.s03h8y’ ‘~/tmp/scratch/xvfb-run.sLqxyK’   ‘~/tmp/scratch/xvfb-run.tpoj3j’ ‘~/tmp/scratch/xvfb-run.tzofb5’   ‘~/tmp/scratch/xvfb-run.uLk50W’ ‘~/tmp/scratch/xvfb-run.w40hIg’   ‘~/tmp/scratch/xvfb-run.wkO1Nn’ ‘~/tmp/scratch/xvfb-run.x6jbRG’   ‘~/tmp/scratch/xvfb-run.xMr9RP’ ‘~/tmp/scratch/xvfb-run.zut9Kv’
• DONE

Status: 1 NOTE