• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 14:02:51 UTC
• checking for file ‘codified/DESCRIPTION’ ... OK
• this is package ‘codified’ version ‘0.3.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘codified’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] NOTE Found calls to structure() using deprecated special names:   codified/tests/testthat/test-table-nih-enrollment.R (.Label: 3) '.Label' should be changed to 'levels'.
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/6s] OK   Running ‘testthat.R’ [4s/6s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [3s/4s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0InkXa’ ‘~/tmp/scratch/Rtmp0TrHvx’   ‘~/tmp/scratch/Rtmp0qX5jR’ ‘~/tmp/scratch/Rtmp1UbDYg’   ‘~/tmp/scratch/Rtmp1jm90r’ ‘~/tmp/scratch/Rtmp1uqXvp’   ‘~/tmp/scratch/Rtmp2G5OYJ’ ‘~/tmp/scratch/Rtmp2Pye78’   ‘~/tmp/scratch/Rtmp2WDoUX’ ‘~/tmp/scratch/Rtmp3JrKaH’   ‘~/tmp/scratch/Rtmp5DdAod’ ‘~/tmp/scratch/Rtmp5UXZfF’   ‘~/tmp/scratch/Rtmp5ZQ1z9’ ‘~/tmp/scratch/Rtmp5deGzW’   ‘~/tmp/scratch/Rtmp5ozI7G’ ‘~/tmp/scratch/Rtmp5u5uGc’   ‘~/tmp/scratch/Rtmp6CHcEX’ ‘~/tmp/scratch/Rtmp6bNJb2’   ‘~/tmp/scratch/Rtmp7MtiEX’ ‘~/tmp/scratch/Rtmp88uZmw’   ‘~/tmp/scratch/Rtmp8MZbtq’ ‘~/tmp/scratch/Rtmp91LC1d’   ‘~/tmp/scratch/Rtmp9crVGW’ ‘~/tmp/scratch/RtmpA4z882’   ‘~/tmp/scratch/RtmpAib2do’ ‘~/tmp/scratch/RtmpBY6irr’   ‘~/tmp/scratch/RtmpBjkPuT’ ‘~/tmp/scratch/RtmpC061cT’   ‘~/tmp/scratch/RtmpCEN0Xh’ ‘~/tmp/scratch/RtmpCNbAtT’   ‘~/tmp/scratch/RtmpCpbwpf’ ‘~/tmp/scratch/RtmpD0d8sQ’   ‘~/tmp/scratch/RtmpD9ykug’ ‘~/tmp/scratch/RtmpDnwJ96’   ‘~/tmp/scratch/RtmpE4IiWa’ ‘~/tmp/scratch/RtmpEVEjyP’   ‘~/tmp/scratch/RtmpGFk586’ ‘~/tmp/scratch/RtmpGPqsZY’   ‘~/tmp/scratch/RtmpGXejdC’ ‘~/tmp/scratch/RtmpGmfPUY’   ‘~/tmp/scratch/RtmpHtp7xd’ ‘~/tmp/scratch/RtmpIaFZdy’   ‘~/tmp/scratch/RtmpJAuJfB’ ‘~/tmp/scratch/RtmpJKGEbR’   ‘~/tmp/scratch/RtmpJShEe2’ ‘~/tmp/scratch/RtmpJpsrYB’   ‘~/tmp/scratch/RtmpK6PZ7C’ ‘~/tmp/scratch/RtmpL3TG1b’   ‘~/tmp/scratch/RtmpLF7AQC’ ‘~/tmp/scratch/RtmpMk0T48’   ‘~/tmp/scratch/RtmpOMwuZC’ ‘~/tmp/scratch/RtmpOi9gs6’   ‘~/tmp/scratch/RtmpP3evDa’ ‘~/tmp/scratch/RtmpQmEBDY’   ‘~/tmp/scratch/RtmpROsSKE’ ‘~/tmp/scratch/RtmpTTlaDr’   ‘~/tmp/scratch/RtmpUNXvWI’ ‘~/tmp/scratch/RtmpUZyxBQ’   ‘~/tmp/scratch/RtmpVuc7Yr’ ‘~/tmp/scratch/RtmpWxl20N’   ‘~/tmp/scratch/RtmpXBi1e2’ ‘~/tmp/scratch/RtmpXo0Hgn’   ‘~/tmp/scratch/RtmpY4NBy5’ ‘~/tmp/scratch/RtmpY9rh3M’   ‘~/tmp/scratch/RtmpYD5q9C’ ‘~/tmp/scratch/RtmpYLF1YX’   ‘~/tmp/scratch/RtmpZ9NUxr’ ‘~/tmp/scratch/RtmpZF5t8J’   ‘~/tmp/scratch/RtmpaBwSe1’ ‘~/tmp/scratch/RtmpaCTYlO’   ‘~/tmp/scratch/RtmpaT2XAQ’ ‘~/tmp/scratch/Rtmpag2viZ’   ‘~/tmp/scratch/RtmpbSYMZQ’ ‘~/tmp/scratch/RtmpbbPExL’   ‘~/tmp/scratch/Rtmpdskz1D’ ‘~/tmp/scratch/Rtmpf8pI6D’   ‘~/tmp/scratch/RtmpfZ8NmD’ ‘~/tmp/scratch/RtmpfkzM1J’   ‘~/tmp/scratch/Rtmpfq3g7V’ ‘~/tmp/scratch/Rtmpg2clyZ’   ‘~/tmp/scratch/RtmpgScupz’ ‘~/tmp/scratch/RtmpgWUAQ1’   ‘~/tmp/scratch/Rtmph06kKW’ ‘~/tmp/scratch/Rtmph0bkHL’   ‘~/tmp/scratch/RtmpjBrppE’ ‘~/tmp/scratch/RtmpjtraDP’   ‘~/tmp/scratch/Rtmpkc6ZMI’ ‘~/tmp/scratch/RtmpljFVtj’   ‘~/tmp/scratch/RtmpllPF7H’ ‘~/tmp/scratch/Rtmplq0zyq’   ‘~/tmp/scratch/RtmpnOjSM3’ ‘~/tmp/scratch/RtmpnUOkPc’   ‘~/tmp/scratch/Rtmpp2ub1C’ ‘~/tmp/scratch/Rtmpq1B23B’   ‘~/tmp/scratch/Rtmpq3mbIb’ ‘~/tmp/scratch/RtmpqAnTXL’   ‘~/tmp/scratch/RtmpsquhV4’ ‘~/tmp/scratch/RtmpszFXff’   ‘~/tmp/scratch/RtmptRFA9O’ ‘~/tmp/scratch/RtmpuGQ1vG’   ‘~/tmp/scratch/RtmpwC6P5I’ ‘~/tmp/scratch/RtmpxigB1P’   ‘~/tmp/scratch/RtmpxrD9pn’ ‘~/tmp/scratch/RtmpycNo2u’   ‘~/tmp/scratch/Rtmpz2WMSt’ ‘~/tmp/scratch/RtmpzuNM0U’   ‘~/tmp/scratch/xvfb-run.0lbo1q’ ‘~/tmp/scratch/xvfb-run.2dOdAd’   ‘~/tmp/scratch/xvfb-run.3npoiU’ ‘~/tmp/scratch/xvfb-run.4TbSYY’   ‘~/tmp/scratch/xvfb-run.4yZUAG’ ‘~/tmp/scratch/xvfb-run.7epSAc’   ‘~/tmp/scratch/xvfb-run.Cxu2Kg’ ‘~/tmp/scratch/xvfb-run.E0QB76’   ‘~/tmp/scratch/xvfb-run.EmWMOg’ ‘~/tmp/scratch/xvfb-run.F1MfnK’   ‘~/tmp/scratch/xvfb-run.FjBcka’ ‘~/tmp/scratch/xvfb-run.JF4Ulm’   ‘~/tmp/scratch/xvfb-run.OGLVjd’ ‘~/tmp/scratch/xvfb-run.PfLjbH’   ‘~/tmp/scratch/xvfb-run.RLkfrt’ ‘~/tmp/scratch/xvfb-run.RPKmI1’   ‘~/tmp/scratch/xvfb-run.RYOCsU’ ‘~/tmp/scratch/xvfb-run.T6TDDJ’   ‘~/tmp/scratch/xvfb-run.Uz8ONm’ ‘~/tmp/scratch/xvfb-run.YFaLz4’   ‘~/tmp/scratch/xvfb-run.YMwXLS’ ‘~/tmp/scratch/xvfb-run.YP0T0i’   ‘~/tmp/scratch/xvfb-run.atZHMM’ ‘~/tmp/scratch/xvfb-run.d4ahR8’   ‘~/tmp/scratch/xvfb-run.gtjrYz’ ‘~/tmp/scratch/xvfb-run.h7sWds’   ‘~/tmp/scratch/xvfb-run.hA8LEh’ ‘~/tmp/scratch/xvfb-run.i1ycEE’   ‘~/tmp/scratch/xvfb-run.nIeUzH’ ‘~/tmp/scratch/xvfb-run.o9usOS’   ‘~/tmp/scratch/xvfb-run.oQce6Q’ ‘~/tmp/scratch/xvfb-run.obB38T’   ‘~/tmp/scratch/xvfb-run.ohpVox’ ‘~/tmp/scratch/xvfb-run.pk3b5o’   ‘~/tmp/scratch/xvfb-run.rpxB86’ ‘~/tmp/scratch/xvfb-run.snT6iB’   ‘~/tmp/scratch/xvfb-run.vdKTTA’ ‘~/tmp/scratch/xvfb-run.xXLtSl’   ‘~/tmp/scratch/xvfb-run.yJ9UtD’ ‘~/tmp/scratch/xvfb-run.zZAVyn’
• DONE

Status: 2 NOTEs