• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 13:58:14 UTC
• checking for file ‘clogitL1/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘clogitL1’ version ‘1.5’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Stephen",                       family = "Reid",                       role = c("aut", "cre"),                       email = "sreid1652@gmail.com"),                person(given = "Robert",                       family = "Tibshirani",                       role = "aut")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘clogitL1’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) print.clogitL1.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) print.clogitL1.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) print.clogitL1.Rd:23: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [1s/2s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0BmqFJ’ ‘~/tmp/scratch/Rtmp0G0lln’   ‘~/tmp/scratch/Rtmp0MNjjJ’ ‘~/tmp/scratch/Rtmp1Bqe7H’   ‘~/tmp/scratch/Rtmp1WKh4q’ ‘~/tmp/scratch/Rtmp2n3rFP’   ‘~/tmp/scratch/Rtmp3F3xxK’ ‘~/tmp/scratch/Rtmp3iPhkE’   ‘~/tmp/scratch/Rtmp3mDMOT’ ‘~/tmp/scratch/Rtmp5qJvcP’   ‘~/tmp/scratch/Rtmp6FNsG7’ ‘~/tmp/scratch/Rtmp6H3570’   ‘~/tmp/scratch/Rtmp6vZphi’ ‘~/tmp/scratch/Rtmp7IQqOa’   ‘~/tmp/scratch/Rtmp7q18RC’ ‘~/tmp/scratch/Rtmp8CAHpv’   ‘~/tmp/scratch/Rtmp8UXE7Z’ ‘~/tmp/scratch/Rtmp8WijiR’   ‘~/tmp/scratch/Rtmp9gugzc’ ‘~/tmp/scratch/Rtmp9zTPHA’   ‘~/tmp/scratch/RtmpBG3tMp’ ‘~/tmp/scratch/RtmpC46Lab’   ‘~/tmp/scratch/RtmpCeXoqD’ ‘~/tmp/scratch/RtmpF64w0P’   ‘~/tmp/scratch/RtmpF8KNC0’ ‘~/tmp/scratch/RtmpGAt8XW’   ‘~/tmp/scratch/RtmpGmb2mo’ ‘~/tmp/scratch/RtmpGrcuIB’   ‘~/tmp/scratch/RtmpHRjpci’ ‘~/tmp/scratch/RtmpIiPeud’   ‘~/tmp/scratch/RtmpLNAh8p’ ‘~/tmp/scratch/RtmpMDuX4F’   ‘~/tmp/scratch/RtmpN8Kf0J’ ‘~/tmp/scratch/RtmpOMXEqE’   ‘~/tmp/scratch/RtmpOOoKqb’ ‘~/tmp/scratch/RtmpOXqhBM’   ‘~/tmp/scratch/RtmpPGGJPq’ ‘~/tmp/scratch/RtmpPPZZ5e’   ‘~/tmp/scratch/RtmpQ2zZvf’ ‘~/tmp/scratch/RtmpRGDZqL’   ‘~/tmp/scratch/RtmpRwfJiB’ ‘~/tmp/scratch/RtmpRyetM7’   ‘~/tmp/scratch/RtmpSDoMwx’ ‘~/tmp/scratch/RtmpTF0ZWp’   ‘~/tmp/scratch/RtmpUbjALf’ ‘~/tmp/scratch/RtmpUbmc08’   ‘~/tmp/scratch/RtmpUfcXyr’ ‘~/tmp/scratch/RtmpW7IlaN’   ‘~/tmp/scratch/RtmpWiCZ7J’ ‘~/tmp/scratch/RtmpXWiLKB’   ‘~/tmp/scratch/RtmpXtLtFI’ ‘~/tmp/scratch/RtmpY41rBi’   ‘~/tmp/scratch/RtmpYTZzJI’ ‘~/tmp/scratch/RtmpYliH1s’   ‘~/tmp/scratch/RtmpZ0Rm0p’ ‘~/tmp/scratch/RtmpZ0aXI5’   ‘~/tmp/scratch/RtmpaCQS2A’ ‘~/tmp/scratch/RtmpbauV3P’   ‘~/tmp/scratch/RtmpchT1bn’ ‘~/tmp/scratch/Rtmpcy4VSp’   ‘~/tmp/scratch/Rtmpd3Oeuq’ ‘~/tmp/scratch/RtmpeSXzU7’   ‘~/tmp/scratch/RtmpfkgeTw’ ‘~/tmp/scratch/Rtmpgdqwm2’   ‘~/tmp/scratch/RtmpgfK6AQ’ ‘~/tmp/scratch/Rtmph8V9Lm’   ‘~/tmp/scratch/RtmpiECe8C’ ‘~/tmp/scratch/RtmpiFDGZG’   ‘~/tmp/scratch/Rtmpij17qB’ ‘~/tmp/scratch/Rtmpixkt20’   ‘~/tmp/scratch/RtmpkRat9C’ ‘~/tmp/scratch/RtmpltQiFm’   ‘~/tmp/scratch/Rtmpm2Pym5’ ‘~/tmp/scratch/Rtmpmgb9H6’   ‘~/tmp/scratch/RtmpmoUYp5’ ‘~/tmp/scratch/RtmpoZcaD8’   ‘~/tmp/scratch/Rtmpop1YDX’ ‘~/tmp/scratch/RtmpoqEyh6’   ‘~/tmp/scratch/Rtmpp7RtyF’ ‘~/tmp/scratch/Rtmppztn4a’   ‘~/tmp/scratch/RtmpqgZQVE’ ‘~/tmp/scratch/RtmprfSaj2’   ‘~/tmp/scratch/RtmpsSsvKL’ ‘~/tmp/scratch/RtmpsX5GP5’   ‘~/tmp/scratch/RtmptV0Qnz’ ‘~/tmp/scratch/RtmptwVe35’   ‘~/tmp/scratch/RtmpuUoPvj’ ‘~/tmp/scratch/Rtmpuq9u0W’   ‘~/tmp/scratch/Rtmpuz6p66’ ‘~/tmp/scratch/RtmpvEZMh4’   ‘~/tmp/scratch/RtmpvzezXa’ ‘~/tmp/scratch/RtmpwVTiK6’   ‘~/tmp/scratch/RtmpxMm8RE’ ‘~/tmp/scratch/RtmpyWiS6i’   ‘~/tmp/scratch/Rtmpz6oz2f’ ‘~/tmp/scratch/cc0ymA0W.s’   ‘~/tmp/scratch/xvfb-run.2VBBmi’ ‘~/tmp/scratch/xvfb-run.3dFGGI’   ‘~/tmp/scratch/xvfb-run.3zHgEb’ ‘~/tmp/scratch/xvfb-run.5rUXl1’   ‘~/tmp/scratch/xvfb-run.67aLMV’ ‘~/tmp/scratch/xvfb-run.7G75QM’   ‘~/tmp/scratch/xvfb-run.8TD9R9’ ‘~/tmp/scratch/xvfb-run.8hrvqI’   ‘~/tmp/scratch/xvfb-run.A7VbgN’ ‘~/tmp/scratch/xvfb-run.AxF9NL’   ‘~/tmp/scratch/xvfb-run.ByHX6a’ ‘~/tmp/scratch/xvfb-run.CcIUpT’   ‘~/tmp/scratch/xvfb-run.FbxN2z’ ‘~/tmp/scratch/xvfb-run.GDDgGh’   ‘~/tmp/scratch/xvfb-run.IVN3na’ ‘~/tmp/scratch/xvfb-run.LDAUox’   ‘~/tmp/scratch/xvfb-run.PVZBrP’ ‘~/tmp/scratch/xvfb-run.UeoJpP’   ‘~/tmp/scratch/xvfb-run.W25873’ ‘~/tmp/scratch/xvfb-run.a0tA8q’   ‘~/tmp/scratch/xvfb-run.cVY3dV’ ‘~/tmp/scratch/xvfb-run.d1w0Ga’   ‘~/tmp/scratch/xvfb-run.fX0AlA’ ‘~/tmp/scratch/xvfb-run.g6LYg4’   ‘~/tmp/scratch/xvfb-run.hFaupj’ ‘~/tmp/scratch/xvfb-run.lkF01e’   ‘~/tmp/scratch/xvfb-run.llbYvH’ ‘~/tmp/scratch/xvfb-run.p62DYp’   ‘~/tmp/scratch/xvfb-run.pzrqHu’ ‘~/tmp/scratch/xvfb-run.qydIFD’   ‘~/tmp/scratch/xvfb-run.xzfLkY’
• DONE

Status: 3 NOTEs