- using R Under development (unstable) (2026-07-21 r90286)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-2) 16.1.0
GNU Fortran (Debian 16.1.0-2) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-22 13:49:52 UTC
- checking for file ‘cg/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘cg’ version ‘1.0-4’
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘cg’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/5s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
- checking loading without being on the library search path ... [3s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [38s/47s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [17s/23s] ERROR
Running examples in ‘cg-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: varianceGraph.cgOneFactorFit
> ### Title: Equal Variance Graphs assessment of cgOneFactorFit object
> ### Aliases: varianceGraph,cgOneFactorFit-method
> ### varianceGraph.cgOneFactorFit
>
> ### ** Examples
>
> ## From running examples of cgOneFactorData objects
> data(canine)
> canine.data <- prepareCGOneFactorData(canine, format="groupcolumns",
+ analysisname="Canine",
+ endptname="Prostate Volume",
+ endptunits=expression(plain(cm)^3),
+ digits=1, logscale=TRUE, refgrp="CC")
> canine.fit <- fit(canine.data)
>
> varianceGraph(canine.fit)
>
> varianceGraph(canine.fit, model="olsonly")
>
>
> gmcsfcens.data <- prepareCGOneFactorData(gmcsfcens, format="groupcolumns",
+ analysisname="cytokine",
+ endptname="GM-CSF (pg/ml)",
+ logscale=TRUE,
+ digits=1)
>
> gmcsfcens.fit <- fit(gmcsfcens.data, type="aft")
>
> varianceGraph(gmcsfcens.fit, trend=TRUE)
>
> varianceGraph(gmcsfcens.fit) ## will yield a warning message why no line
Warning message:
In variancegraph(residuals(aftfit, type = "response"), predict(aftfit), :*** buffer overflow detected ***: terminated
Aborted
- checking PDF version of manual ... [12s/17s] OK
- checking HTML version of manual ... [5s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR